Ipal004777.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- Zfpm1_1
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000358.1:45859-49014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.3 3.2e+02 1.8 0.1 3 23 8 28 6 28 0.90 2 15 0.073 3.2 8.1 0.7 1 22 564 585 564 587 0.86 3 15 0.34 15 6.0 0.0 2 23 671 693 670 693 0.92 4 15 0.0013 0.058 13.6 1.2 1 23 701 723 701 723 0.98 5 15 7.2e-05 0.0031 17.5 1.4 2 23 726 747 725 747 0.97 6 15 0.0029 0.12 12.5 2.3 1 23 753 775 753 775 0.98 7 15 1.4e-05 0.00059 19.8 3.2 2 23 782 803 781 804 0.95 8 15 4.9 2.1e+02 2.3 2.2 6 23 818 835 816 835 0.94 9 15 0.00012 0.0052 16.9 3.4 2 23 841 863 840 863 0.96 10 15 0.15 6.7 7.1 0.0 2 23 879 899 878 899 0.96 11 15 0.00014 0.006 16.7 1.3 1 20 905 924 905 927 0.92 12 15 7.9e-05 0.0034 17.4 0.4 1 23 935 957 935 957 0.99 13 15 0.001 0.044 13.9 3.7 1 23 963 985 963 985 0.98 14 15 7.3e-07 3.2e-05 23.8 3.0 1 23 991 1013 991 1013 0.98 15 15 0.0016 0.07 13.3 7.0 1 23 1019 1041 1019 1042 0.96
Sequence Information
- Coding Sequence
- ATGGATAcgaataatattatttgtcCAGTTTGTACATTATATCTACGACCTGGTATAACATTAAAAAGTCATTTGAGTAGTCATCCGAAACAGAAAGTTATCGAGGCGTTGGTCCGACTAGCCGATCCTGATGAAATCCAAAAAACCGTAAATCCATCATCagcattaacaacaacaacacaaccacaacaacaacaacaacaacaacaacaaccacaaccatcGACAACAACATGTTCATCAGGTAGTACAAATTCacaaatcaatattgttaatCAAACATGGAATCAAGGTAATTTAGTCAATATGCCTCCGAATCTACCACAAATGCAGGGCAATCATCtgtttatttatcaacaaagtATGAGCAGTACAACCGGCCCACAACAGAATGTGCTCAATGTTAATCCATTATCACCGCAATACGTAATACCGACTGTACTAAATCCACAGATGATGCCCTatgtttatcaacaacaacaagttatCATGTCTAGTGGTTCATGTTTATCATCACCGATTCGATCTTTAACATTTGaactaccatcaccaccatctaCAAtaacatcatcaccaccaacaactTCAACAACTGATATTGTACCATCAAATCAGATTTCCACTTGTgataatttagatgaaatcAATGAAGAATCAACAAGAAATCAAGACCAATCAAATGATGatataaatgatgaaatacataataaacaagaaacaaatatatcagtaaaaaatgatattgatatACAGAAATTACATACAtcgattgatttaaaattctatgaagatgataatgatgattgtaATGATAATCATGATAgtgaacaaaattttgaaacacaTGAAGAAATGTCTtctacatcatcatcatcaacatcatcattatcaccacaTTCACCAACTGGTTCTGATTGGAATATACGTGTTAGATCTGATCTAAATAAAGCATGTCAaacacaaaatacaacaaatagtTTATCACCAAGATCAATAATACAaactaatgatgataataatatcatgGAAATTGATACAACTAAACCTGATGAACcggaattttattttgttaatgaaTCTGAACAagatcaatcaattattaataataataataataatagtaatagtgataatagtaGTGTAACTGTATCACAACAAAATTACGAACAATTAAATCCAATTTATACAACATCAAATGTCTTACAATCAAGTGATCATTTAGATTTCGTTGATATGGATGGTATGCAAATGGTGATGaatgatttttcaacaaatcaaattatatcacaagtggaaaattttgaaGGTAGTACACCGGATCGTCCAGGTGTATTAATGACAATTGGTGGTATGGTTGATGATCATCGTGATGAATCATTATCAAGAGAAAGTTCAAATGTTAATATACGTGCTGATGAACGGATGCCACCTAGAGGTGAACTATCCGGTCAAGAGAGTATCGATGGTACAACTAGTGATAATACAACATCATGGAATCATCGTGTACAatatgataatggtaatacaTCATATGATATATTTACAAGAGAAAATTGGGGTGCAGCATCGGATAGTTCCGATATTGAtataacaccaccaccattacaaAGTCGTATACCACCATCATATGATGAtcaagatgataatgatacacCGACAATTGTTAGTTTTAGTGGGCCAccattgaattttaaatgttcaacATGTGGTGAAGCATTTCAATCAACAAAAGAACGTAGAGAACATGAAATTGAGAAACATACCGAGAAAATTACACGTGTCAGTCATGTAGGTGGTGAGATTGGTAAGaagaaagtgaaaaaattagttgttaaattgaaacaggataaatgtgaaaatgagaataatttcgataatgtctttacaaataaattgaaaattgaaaatgcaactattaatgaaaatgatgaaattgcaacaaatacTCCCGATGAATCAACACCTAATGTTAAATTAGATGATAGTGGTGTTGTGGTTGAATTGAAAACTGTTTGTCCATTATGTGAAGTTGTTCTACCGAATGCTAGAGCATTACGTGAACATAAACAAGATGTACATAATATAACAGCACAGACCCGTCATAAATGTATGACATGTGGTGAAGTATTTCCAAATGATTACAAGTTTTCCGAACATCTACGTATACATCCATTGGAATGTAAATTGTGTGGTAAATTGTTCTATCGTCgacaaaatattcaattgcATATGCGCCGTCATTTGGGCATAAAACCGTATAAATGTGATATATGTGAGAAAGCATTCCtaacaaaacagaaattacACGAACATCGTAATATACATACAGGTGATGCACCGATTAAATGCACGTTATGCGATGAAACATTTCGACGTTATTCAAATCTTGTACAACATCGGAATCGACATCATTtgaatgtaaagaaaaaagtcAAAGATTATATATGTTTTTGTAAGGAGATCTTtcattcgaaaaaaaaactcgccTGGCACAAAGAGATACATGATTCAAAACCGAAATCATGTACACAATGTAGTGAAAAATTCATCCATATGTCGAGTTTAACAAGACATATGCGTCGTGCACATAATGATCGTTTTCTACCAAATGGTCATAAAAGTGctgaaaatgttgaatgtCCAATATGTAAAGGTGTCtatttaaaatcatcattagATGTACATATACGGAATCATAGTGGTCAACGACCCTATACATGTTTAATATGTAATAaagattttacaacaaaatggaatttaaaattacataaatggACACATGCATCACGTATCTCGAAACCATTCAAATGTGATCAATGTAAAGGTGCATTTATACGTGAATCGGATTATACGGCCCATATGAATTCACATAAAAGTATCCGACCATATACATGTAATTATTGTGGTGCTCAATTTATAAGGAAATATAATTGTCAACGGCATGTTAAAGAacatgaaaatgataaaacgTTCAGTTGTAAAGTATGTGGTAAAGCATTTCATCGAtcatattatttaaaagatcaTATGCGAATCCATAGTGGTATACGACCATATTCATGTCATATATGTGGCAAAACATCAACAACCAAATCGAATCATAATAAGCATGTACAAATCCATCATGCCAGAGAGCCTGTTAGCACAGAAAattaa
- Protein Sequence
- MDTNNIICPVCTLYLRPGITLKSHLSSHPKQKVIEALVRLADPDEIQKTVNPSSALTTTTQPQQQQQQQQQPQPSTTTCSSGSTNSQINIVNQTWNQGNLVNMPPNLPQMQGNHLFIYQQSMSSTTGPQQNVLNVNPLSPQYVIPTVLNPQMMPYVYQQQQVIMSSGSCLSSPIRSLTFELPSPPSTITSSPPTTSTTDIVPSNQISTCDNLDEINEESTRNQDQSNDDINDEIHNKQETNISVKNDIDIQKLHTSIDLKFYEDDNDDCNDNHDSEQNFETHEEMSSTSSSSTSSLSPHSPTGSDWNIRVRSDLNKACQTQNTTNSLSPRSIIQTNDDNNIMEIDTTKPDEPEFYFVNESEQDQSIINNNNNNSNSDNSSVTVSQQNYEQLNPIYTTSNVLQSSDHLDFVDMDGMQMVMNDFSTNQIISQVENFEGSTPDRPGVLMTIGGMVDDHRDESLSRESSNVNIRADERMPPRGELSGQESIDGTTSDNTTSWNHRVQYDNGNTSYDIFTRENWGAASDSSDIDITPPPLQSRIPPSYDDQDDNDTPTIVSFSGPPLNFKCSTCGEAFQSTKERREHEIEKHTEKITRVSHVGGEIGKKKVKKLVVKLKQDKCENENNFDNVFTNKLKIENATINENDEIATNTPDESTPNVKLDDSGVVVELKTVCPLCEVVLPNARALREHKQDVHNITAQTRHKCMTCGEVFPNDYKFSEHLRIHPLECKLCGKLFYRRQNIQLHMRRHLGIKPYKCDICEKAFLTKQKLHEHRNIHTGDAPIKCTLCDETFRRYSNLVQHRNRHHLNVKKKVKDYICFCKEIFHSKKKLAWHKEIHDSKPKSCTQCSEKFIHMSSLTRHMRRAHNDRFLPNGHKSAENVECPICKGVYLKSSLDVHIRNHSGQRPYTCLICNKDFTTKWNLKLHKWTHASRISKPFKCDQCKGAFIRESDYTAHMNSHKSIRPYTCNYCGAQFIRKYNCQRHVKEHENDKTFSCKVCGKAFHRSYYLKDHMRIHSGIRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -