Ipal005612.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000457.1:58713-61312[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.01 0.45 10.8 0.2 2 23 24 46 23 46 0.97 2 13 3e-06 0.00013 21.9 0.4 1 21 54 74 54 75 0.95 3 13 0.0013 0.058 13.6 0.8 1 23 83 105 83 105 0.98 4 13 0.001 0.044 13.9 0.6 1 23 111 133 111 133 0.98 5 13 0.001 0.043 14.0 4.1 1 23 139 161 139 161 0.94 6 13 0.0014 0.062 13.5 2.8 1 23 167 189 167 189 0.99 7 13 0.00081 0.035 14.2 2.8 2 23 342 363 342 363 0.97 8 13 7.2e-06 0.00031 20.7 0.2 2 23 408 430 407 430 0.96 9 13 0.00015 0.0066 16.5 0.2 1 20 440 459 440 461 0.93 10 13 7.5e-05 0.0033 17.5 1.8 1 23 469 491 469 491 0.99 11 13 0.0071 0.31 11.3 2.6 3 23 499 519 498 519 0.98 12 13 4.4e-06 0.00019 21.4 0.3 1 23 525 547 525 547 0.97 13 13 2.7 1.2e+02 3.1 3.2 3 23 555 575 553 575 0.93
Sequence Information
- Coding Sequence
- ATGAATGAGAAACATGAAAAAAGCGCGAAAGCTCCGATAGTGTTacaagaaaattcaacaacagtGAAGAAATGTAAATTCTGTCcatctatatttaataataatgctgcATATTTAATTCATATCGAAACAGTACATAAGAATAAGAATGGTAATTGTTATATGTGCAGTGACTGTGGACGACAATTTCGTAGTAGAAGTGAATTATCGCAACATATCAAATCAAAATGCGGCACTATCAGACGGTTTAAATGTAAGATTTGTGGCCAAGAATTAATGTCGGCTGGTTCTTTGCACAATCATACAATACGTCATATTGGTGAGCGATGTTTTATGTGTCGATATTGTGCAAAATTATTCTTTACAGCTGGTCAATTGAAAGTACACGAACGAATTCATACACAAGATAAAGCTTATGTTTGTAATgtGTGCAATAAAGGCTTCTGTCACAGACAAAGTTTAATAACACATAGTACTCTACATACTGGTATTAAACCATTTCAATgtgaaaattgtggaaattcaTTTAGTTGTATTGGTAATCTATTGAAACATCGTAAAACACATGCTGATACATGTGGATTAATACCGTTAACAACACATCGAGTTGAACATCCaaatacgaaaataaaaatgaagattAATACACCGGCTAATACTCGATTGAAAAGTGTTGAGAAAGATAGAGAGTTACAGCAAGAACTTGATGTGATTAGAAAAGAATTAGGATCTAATTTAACAGAACAGACGAgtaatgatgaaattgaacCAACAGGAAAACTAGTTGATAACAGAGGACAATCTGTAATAGAATTGGAAGAAAATAGcgatgaaattttgataaaaattgaggAAGAAGACATGAAACTGGAAGAAACGGAAGATAAAAGGATAAAAGTTCCTGAAAACACGGAGACTTCTAGGAAAAAACGTAAACGAATCAAAAAGAAGAAGGACCAGCAAGTGGAAACCACTTTTCAGCAATTCATTGTTGAATGGAGGCTCGaaaatgtaaagaaaccacagtgtaaattttgtaaaaaaactTACACAAATACTAGGTGGTTGTTCAGGCATGTCCAGGAGCATGGTATTGATTTTCGAATGGTAAATTCGCAaactattcaaatattatcacATAAATGTAGTTGTTGTAAAGTATCTTTTCCATCAAAAGATGAATGTTTGGCCCATCAACAGAAAACACATTCGGATATTTTAACTTGTTATGTTTGTGATAAAATATTCGCCAATCGTGATTCCCTTCAAACACACATTAATATCTATCATAAAGGTGTTGAACGTAAAATCTATTCGTATATTTGTGAGAAATGTGGTGTCAAGTTCCGGCAAAAAGCCCAACTGGTCCATCATGAAGAGATGAATTGTAATCAAGGAGCATCGTATGAATGTCCAACATGTCGCAAGAAATTCTCCAGTTCAAATACACGTGATAATCATATGAGAATACATGATCCGGAGAAGAGtttattgtgtaaattttgtacGAAACGTTTTCGTTGGAAGggacaattgaaaattcacgAACGTAAACATACTGGCGAGAAACCATTTATTTGTCCGTATTGTTGGAAAGCATTTGCACATCGCGAAAGTTTAATAACACATATTACAATACATACAGGTATTAAACCGCATTTATGTGAAAGTTGTGGATCTCGATTCTCTTGTATTGGCAATTTGATAAAGCATCGTGTTAAACATGCCACAGAATGTGGAGCTTGggaatataaattacaaaaacgaaataacaatgaaacagaaacaattactgaaaaatga
- Protein Sequence
- MNEKHEKSAKAPIVLQENSTTVKKCKFCPSIFNNNAAYLIHIETVHKNKNGNCYMCSDCGRQFRSRSELSQHIKSKCGTIRRFKCKICGQELMSAGSLHNHTIRHIGERCFMCRYCAKLFFTAGQLKVHERIHTQDKAYVCNVCNKGFCHRQSLITHSTLHTGIKPFQCENCGNSFSCIGNLLKHRKTHADTCGLIPLTTHRVEHPNTKIKMKINTPANTRLKSVEKDRELQQELDVIRKELGSNLTEQTSNDEIEPTGKLVDNRGQSVIELEENSDEILIKIEEEDMKLEETEDKRIKVPENTETSRKKRKRIKKKKDQQVETTFQQFIVEWRLENVKKPQCKFCKKTYTNTRWLFRHVQEHGIDFRMVNSQTIQILSHKCSCCKVSFPSKDECLAHQQKTHSDILTCYVCDKIFANRDSLQTHINIYHKGVERKIYSYICEKCGVKFRQKAQLVHHEEMNCNQGASYECPTCRKKFSSSNTRDNHMRIHDPEKSLLCKFCTKRFRWKGQLKIHERKHTGEKPFICPYCWKAFAHRESLITHITIHTGIKPHLCESCGSRFSCIGNLIKHRVKHATECGAWEYKLQKRNNNETETITEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -