Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010000345.1:48075-50388[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.007 0.3 11.3 0.7 1 23 102 124 102 124 0.99

2 15 0.012 0.52 10.6 0.7 2 20 130 148 129 150 0.93

3 15 6.3e-05 0.0027 17.7 3.0 1 23 162 184 162 184 0.97

4 15 0.00017 0.0073 16.4 0.8 3 23 189 210 188 210 0.94

5 15 0.00055 0.024 14.8 5.7 1 23 219 241 219 241 0.98

6 15 3.3 1.4e+02 2.9 0.2 1 23 246 268 246 268 0.88

7 15 0.00036 0.016 15.4 1.2 1 23 274 296 274 296 0.97

8 15 8.5e-05 0.0037 17.3 2.5 1 23 299 322 299 322 0.96

9 15 0.00093 0.04 14.1 0.2 1 23 331 353 331 353 0.98

10 15 0.037 1.6 9.0 4.3 3 19 362 378 360 384 0.91

11 15 5.6e-05 0.0024 17.9 3.5 2 23 395 417 394 417 0.95

12 15 0.33 14 6.0 3.8 1 23 425 447 425 447 0.94

13 15 8.3e-05 0.0036 17.4 1.4 1 23 454 477 454 477 0.95

14 15 1.2e-06 5.4e-05 23.1 5.2 1 23 483 505 483 505 0.98

15 15 0.00022 0.0095 16.0 3.2 1 23 511 534 511 534 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.007	0.3	11.3	0.7	1	23	102	124	102	124	0.99
2	15	0.012	0.52	10.6	0.7	2	20	130	148	129	150	0.93
3	15	6.3e-05	0.0027	17.7	3.0	1	23	162	184	162	184	0.97
4	15	0.00017	0.0073	16.4	0.8	3	23	189	210	188	210	0.94
5	15	0.00055	0.024	14.8	5.7	1	23	219	241	219	241	0.98
6	15	3.3	1.4e+02	2.9	0.2	1	23	246	268	246	268	0.88
7	15	0.00036	0.016	15.4	1.2	1	23	274	296	274	296	0.97
8	15	8.5e-05	0.0037	17.3	2.5	1	23	299	322	299	322	0.96
9	15	0.00093	0.04	14.1	0.2	1	23	331	353	331	353	0.98
10	15	0.037	1.6	9.0	4.3	3	19	362	378	360	384	0.91
11	15	5.6e-05	0.0024	17.9	3.5	2	23	395	417	394	417	0.95
12	15	0.33	14	6.0	3.8	1	23	425	447	425	447	0.94
13	15	8.3e-05	0.0036	17.4	1.4	1	23	454	477	454	477	0.95
14	15	1.2e-06	5.4e-05	23.1	5.2	1	23	483	505	483	505	0.98
15	15	0.00022	0.0095	16.0	3.2	1	23	511	534	511	534	0.92

Sequence Information

Coding Sequence: ATGAGACATTTACGAATTCCAGGTCAGAACCTGAAAAATCTGACCGCTTTCAAAAGCCAAattacaAATATGATaagagaaattaataaattcgatGATAGTGATAAGAGTGAAGCAATTTCATATATTCAagattgtattaaaaatgaacCGAGTTGCAGTAATACATCATCAAACAGTTCACAATCGTCAAAAAGACAACGTTCAGTTAAAAATCGGAAAACAAGAACGTTACGAAATCGTAAAATTGTGGTAAATGATAGAAGAAAGCAGACGAAACATCGTCGAAAACCGACAGAATCATATAAATGTAAAGTTTGTAATATTAGCGAGAAATCTAAACCGAATATGTTGAAACATTTAGAAACACATGTTGAAGCTCCATTATCATGTCTAAAATGTAAAAAGACCTTTAATGGTAACGTGTCTTTTAAATGGCATTTAACCTATTATTGTAAACCGAAACAAACAAAGGCTTgcaaatttaaatgtaatcaaTGTAGTAAGaaattctCAACAAAACGTACTCTAGATAGTCACCTGCAAGGTCACAAACGAAATAATTGCACTTATTGTGATAAAGTGATAACACGACGTgtacatttaattaaacatttattagaaGTGCATTCAATCAAACTAGAACGGCACACTCATCGTTGTAATACTTGCGAGAAAagTTATATAAAGAAACGTAGCTTGTTTTATCATATGAGACAACATGCTCCcgataaatttgtttgtttagaaTGTggagaaattaatgaaacaattcaaGATTATGAGAATCATAAGAAACAGcatgattttctaaaattatttacatgtCAACGATGTAATGAGAAATTTGCTAGACGTTCACAATATTTGATTCATTTAGCGCAACATGATCGTTACAAATGTAATACATGTAATGAAACTTTTGCATCTCGAGATCATATTACACGACACAAACAATTGGGGCATGATATTGAAGGTTTAAGTCCACGATTTGTTTGTCCACAATGTCGAGCAACGTTTGCCAATGAGAATCGATTATTAGTCCATCTTCGACAACATTCtgGTGATTGTCGTAcgattaattgtaaatattgtaagaaAACATTCAGTTCATTTTATGCATATTATAAACATTGTAGTACAATATTTCATGAGAAATGTAGTCCAGAAATGAATGATATTGTATGTAAAATATGTGGTaaacattttacaaaaaaatacgtCTTAAAACAACATATACATCGTGtccataataaatattcacgtgaaccatttaaatgtgaacATTGTCAATATGAGACACATAGTAAAGGGAATATTTTACGACATTCAGAATTACATTTTCGTAAAACGAATCATTTTACATGTGAATATTGTGGTAAAAGTTGTGATAATATAGCCAGTTTAAAGGATCATATATCCTACAATCATTTACagGAGAAACAATTCCATTGtgaaaaatgcaataaatcgTTTAAACGTAATTCGGAATTAGCTCGACATAGAAAGAGTCATTCTGATGAACGACCACATGTTTGTATAGATTGTGGTAAATCTTATAAACGTTTAACGCATTTAAAACGACACGAACAGTCTGCACATAAAGTTATAAAAGACAATCAACGTATTACAAGTATAATAGTAGAAgaggataataaaaataaaatcgaatcaaCAACAGATGAGAAAATCATTATATTACAATCATATACATTGAaaaatgttgatgattttaaaatgattaatctacaaaatactgataatcatgataatatatttatgtCAATACCggataataatgttgatgttaAAGGTGATGATCAATTGATAAGTACATTTACACCGGAGAAAAATTGGGGTATTGAACCGcatctatataaatattataatgatgTACCgatgaattttgaaaaagacGATCcgaatttcaatcaaaatttataa
Protein Sequence: MRHLRIPGQNLKNLTAFKSQITNMIREINKFDDSDKSEAISYIQDCIKNEPSCSNTSSNSSQSSKRQRSVKNRKTRTLRNRKIVVNDRRKQTKHRRKPTESYKCKVCNISEKSKPNMLKHLETHVEAPLSCLKCKKTFNGNVSFKWHLTYYCKPKQTKACKFKCNQCSKKFSTKRTLDSHLQGHKRNNCTYCDKVITRRVHLIKHLLEVHSIKLERHTHRCNTCEKSYIKKRSLFYHMRQHAPDKFVCLECGEINETIQDYENHKKQHDFLKLFTCQRCNEKFARRSQYLIHLAQHDRYKCNTCNETFASRDHITRHKQLGHDIEGLSPRFVCPQCRATFANENRLLVHLRQHSGDCRTINCKYCKKTFSSFYAYYKHCSTIFHEKCSPEMNDIVCKICGKHFTKKYVLKQHIHRVHNKYSREPFKCEHCQYETHSKGNILRHSELHFRKTNHFTCEYCGKSCDNIASLKDHISYNHLQEKQFHCEKCNKSFKRNSELARHRKSHSDERPHVCIDCGKSYKRLTHLKRHEQSAHKVIKDNQRITSIIVEEDNKNKIESTTDEKIIILQSYTLKNVDDFKMINLQNTDNHDNIFMSIPDNNVDVKGDDQLISTFTPEKNWGIEPHLYKYYNDVPMNFEKDDPNFNQNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -