Ipal000180.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Iselma pallidipennis
Gene Symbol
salm
Assembly
GCA_037464855.1
Location
JAZBHA010000005.1:45469-50913[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 4.4 1.9e+02 2.5 0.2 3 19 2 18 1 20 0.91
2 10 5.9e-06 0.00025 21.0 0.9 1 23 319 341 319 341 0.98
3 10 8e-06 0.00035 20.5 1.9 1 23 347 369 347 369 0.98
4 10 0.073 3.2 8.1 3.8 2 23 685 706 684 706 0.98
5 10 5e-08 2.2e-06 27.5 0.6 1 23 712 734 712 734 0.97
6 10 7e-05 0.0031 17.6 2.6 1 23 744 766 744 766 0.98
7 10 0.011 0.46 10.7 2.4 2 23 1026 1047 1025 1047 0.97
8 10 0.052 2.3 8.5 0.8 1 14 1053 1066 1053 1067 0.92
9 10 1.6e-06 7e-05 22.7 4.0 3 23 1261 1281 1259 1281 0.96
10 10 2.3e-07 1e-05 25.4 0.9 1 23 1287 1309 1287 1309 0.98

Sequence Information

Coding Sequence
ATGTGCCAGCGTTGTCAAGAACAGTTCACTGACGTTCAAGAATATTTAACACATAAAGCTGAATGCGAAAAGAAAGCTATCAAACATGATGATCCAGCCCATTCAGATCCTGAAGATATGGTCGTAtcagaagatgatgatgacgatgatgagaCTGGTGGTAAACGTTTGGAAAGAATGCGGCGACATCGACAGGATgctgctaataataatagtgttgaTGAAAATTCACCAGATGAAAATCTACGATTGGCTTTCCCATTTCCTGTACCTTCTGCACCAGGTCATGTCACATTAGAAGCTTTACAAAACACCAAAGTCGCTGTGGCACAATTTGCAGCAACTGCAATGGCAAATAATGCTGATAATGAAGCCGCTCTACAAGAACTGGCAGTTTTACAATCAACACTTTTTACATTACAACATCAACAAGTGcttcaattacaattaataaatcaattgcaACAACAATTGCAGATTGATCGTTCAAAAGCAACAAGTCCagtatcaccaccaccatccgAGAATGAGGGTGAATGTGCACCAACTGAAGCTTCACCCCCGCCACAAAATCTTCCAGTTTCAAGAGAAACTACTCCAGTACCAGTACCACCTCCAGTTAGTAATAGTCAGCCATTAATTCAAGCAACTCAAGAATCAGAAATTCCAGTTAGTGAACCTTCAATACATAATTCAGTCGCACCTCTGATCTCTACACAACATTGTTCTATTCCATCATCATTAgcttcaacaattattacacaTAATAATGATCCGCCGTCATTAGATGAACCAAATACTTTAGAAATGTTACAGAAACGAGCTCAAGAAGTTCTAGATAATGCCAGTCAAGGTTTATTAGCTACGAATTTAGCTGATGAATTGGCTTTTAGGAAAAATAAAGGCAGTGTTTCACCGTACGATTCTAAAGGTAGAAATGAACCATTCTTCAAGCATCGTTGCCGGTACTGTGGTAAAGTGTTTGGTTCCGATTCAGCCCTTCAAATACATATCCGATCCCATACGGGTGAACGTCCCTACAAGTGCAATGTTTGTGGTAGTCGATTTACAACAAAAGGCAATCTTAAAGTACATTTTCAAAGACATAGTGCAAAATTTCCTCATATCAAAATGAATCCAAATCCAGTTCCTGAACATTTGGATAAATATCATCCACCACTTTTAGCACAATTAGGTCAACAACCAGCATTATCACCAGGAGGGCCACCTCATCCTCCACATTTAGGTTTCCCAACTGGTCCACCATTTCCACCAACCAATCTGCCATTATATCGACCGCATGggccaccaccgccgccacctGAATTAATCAATACACGTTTACAACCGTCACCGCATAGATTACAAGAACCTAATCAAAGAATTTTTCCACCACATTCAATGTTCATGAAGAGAGAAGAACAAGAAGTACCGGAAAATTTAAGTAAACCACCTAGATCTCCTACGCCAGTTCAAGAGCCGCCACCGTGTAAACAGGAAGTCCCTGAAGAAAATCCAAAAAGAGACTTTAGTGAAGAATTACGACCGAATACGAATGTTCCTCAATTAACACCAAAACAAGAGCCGAGTGATGATAACGAAGGTGAACACGAACCTGAAAGGTTTTCATCACCGACTCCATATGATGAATGCAGTATTGATAGTAAATATAGTAATGAAGATATGTTAAGACAAAGTCCTACCGGTGATCAGTCTGAACATATGCAAGATGAACCCgaaaatctttcaaataaaagtaattcCGTTACTGTTCCTTTAAGTATTTCCACCGGTCAACGATTACCGGCGAATTTTTCTTTCGGACAAGTCAGTTCACCACCAAGCAGCACATCATCAGGTAGTTTGGGTCCATTTCCGTCGACCCAAATTCTTGATCCGGCCAAAGATCCAgcgatttattcaaatttgttaCCACGACCTGGTAGTAATGACAATTCCTGGGAAAGTTTGATAGAAGTGACAAAAACATCGGAAACTAGTAAATTGCAACAACTAGTTGACAACATCGAACATAAACTATCTGATCCGAATCAGTGTGTGATATGTCATAGGGTGTTGTCGTGTAAAAGCGCTTTGCAAATGCATTATCGAACTCACACAGGAGAACGGCCTTTCAAATGTAAAATCTGCGGTCGCGCATTCACAACTAAAGGCAATTTAAAGACACATATGGGCGTTCATCGAGCGAAACCACCGATGCGAGTGTTGCACCAATGTCCTGTTTGtcataaaaaattcacaaacGCTCTAGTTCTACAACAACATATTCGTCTACATACTGGTGAACCGACAGATTTAACACCGGAACAAATTCAAGCGGCTGAAGTGAAAGATTTCCCATCGCCTGGTGGTTTCCCATCATTACCAAATTCCATTCATCCATTCCTCGGACAAGGTTTCCATGTACCAGGATTATCACCACTAGGACATGGTGGTCTCTCGTTAGGTgcaaaattcgataaattcgATAAGGATGATCATGAATCAATGGAcgaagatgatgatgacgatgatgatattAGCAATTGCGATAATCAAAATATGCCACTTTTCGCATCATCACCGTCAGAAATGCAAGGTGCACCGACTAGTATAGCATCACAATTAAGCTGTTCAGCCGAAGATCTGTGTTCGTCCAGAAATGCACCATCCACATCTCCTATGCAGAATGGGGAGAAATCACCTTGCCGATCGGGAATTACCAGTCCTGGGAGTTCAGAGATACGGTCTTCGCCCAACCACATTTCCACAACACCCGTCCAGATGCCACGTCCGCCCTCATCAACACAAGCAGGTAGTCCGACTCCATCCGAGTGCAATTCGTTAGGTGCTCTAGATTTGACGCCACGTACAAACCAGCCGTTAATCACAAGTCCAGGTCCAAGTCCAGGACCACCTCCGTCATTGTTTTCTACATTTGGATTGTTACCTCCAGGTCAAGGTTCATCTCCGTTAATGTCTTCAGCATTATCATCACTGACATCTTCTGTTCTAACATCAACAGCATTTAGTCCTTTACGTTTAGCTGTAGGTCCTCCAGGTCGCGGGAATACCACCTGTAACTTGTGCTTCAAGACGTTCGCTTGTAATTCAGCTTTAGAAATACATTATAGGAGTCATACGAAAGAGCGTCCGTTTAAATGTACTGTTTGTGATAGGGGTTTCTCAACGAAGGGTGAATGTGCATGCAGACAGAGGCGTATCCAGGATGAAGTGGAACCATGGAGGGCATGGAAAGGGAAACGTGCCCCTGGtgctagtagtagtagtagtaatagtaatagtacaAAGTCAATACCATCGGTAATTCCACTACCGATGACGCCTGGATACGCCTCAAACTGGATGCAAATAGCTGGCAACATGAAACAACACATGTTGACGCACAAAATTCGAGATATGCCCCAGCAcatgtttgataataaaccgCAAAATATAAGTGGTGATGAAGGCTCTCAACAGCCACCACctccaccgccaccaccactgccaccacaAAGAGAGAATGTACAAAATCATAATGATAACGAACAGCCGCCACcacagcagcagcaacagcaatcacaacagcatcaacaacagcaactacagcatcaacaacagcaacagcaacaacaacaacaaccaccaccgcctccaccgccaccaccacctcctACTGATCCTAATAAAGAACCAACTGCTAAAAGGGAGCCAACTGAAACGGAATTACCACTACCTAAACGTCCTCCGTCGAGCTTACAGGCCAGTAAGCATTTGTGCCACGTATGCAATAAGAACTTCTCGTCCAGCTCGGCCTTGCAGATACACATGCGTACGCACACGGGCGATAAGCCGTTCAGATGCACCGTGTGCCAGAAGGCCTTCACCACCAAAGGAAATTTAAAGGTACATATGGGCACACACATGTGGAGCAACGGGGCATCCCGACGCGGTCGTCGCATGTCCCTAGATCTACCACCCATTCCCATGACGCCCAAGGATTCAGAATTTCTGCAACGGAGGCCCGACCTCTTCTATCCATACCTACCGGCTCCCTTCCTTAATGGCATGCAACAAAAGTTGAATGAGATGTCTGTGGTGCAAACGAATCAAAACGGGATAACGGGTAATAAATATAGTGGTCTATTAGGTTTCGGTTATCCACCACCAGAATCGTTGCGATCTCAAAGTGTCGGTTCTCCGGAAAGACCAGAGAGGCCGCCTAGCCGTGATGCCCCAGATGCCCGGAGTTTATGGGATCTACATTTTGAACGGAAATCAGCACCGGAAGCTCCACCTAGGGAGGATCTGTTGCCAGCTAATCGAGAAGGTCTAGCTGCCTAA
Protein Sequence
MCQRCQEQFTDVQEYLTHKAECEKKAIKHDDPAHSDPEDMVVSEDDDDDDETGGKRLERMRRHRQDAANNNSVDENSPDENLRLAFPFPVPSAPGHVTLEALQNTKVAVAQFAATAMANNADNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLQIDRSKATSPVSPPPSENEGECAPTEASPPPQNLPVSRETTPVPVPPPVSNSQPLIQATQESEIPVSEPSIHNSVAPLISTQHCSIPSSLASTIITHNNDPPSLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKNKGSVSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPALSPGGPPHPPHLGFPTGPPFPPTNLPLYRPHGPPPPPPELINTRLQPSPHRLQEPNQRIFPPHSMFMKREEQEVPENLSKPPRSPTPVQEPPPCKQEVPEENPKRDFSEELRPNTNVPQLTPKQEPSDDNEGEHEPERFSSPTPYDECSIDSKYSNEDMLRQSPTGDQSEHMQDEPENLSNKSNSVTVPLSISTGQRLPANFSFGQVSSPPSSTSSGSLGPFPSTQILDPAKDPAIYSNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPSLPNSIHPFLGQGFHVPGLSPLGHGGLSLGAKFDKFDKDDHESMDEDDDDDDDISNCDNQNMPLFASSPSEMQGAPTSIASQLSCSAEDLCSSRNAPSTSPMQNGEKSPCRSGITSPGSSEIRSSPNHISTTPVQMPRPPSSTQAGSPTPSECNSLGALDLTPRTNQPLITSPGPSPGPPPSLFSTFGLLPPGQGSSPLMSSALSSLTSSVLTSTAFSPLRLAVGPPGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKGECACRQRRIQDEVEPWRAWKGKRAPGASSSSSNSNSTKSIPSVIPLPMTPGYASNWMQIAGNMKQHMLTHKIRDMPQHMFDNKPQNISGDEGSQQPPPPPPPPLPPQRENVQNHNDNEQPPPQQQQQQSQQHQQQQLQHQQQQQQQQQQPPPPPPPPPPPTDPNKEPTAKREPTETELPLPKRPPSSLQASKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEMSVVQTNQNGITGNKYSGLLGFGYPPPESLRSQSVGSPERPERPPSRDAPDARSLWDLHFERKSAPEAPPREDLLPANREGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00929795;
90% Identity
-
80% Identity
-