Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010000605.1:27669-30426[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7e-05 0.0031 17.6 1.8 1 23 354 376 354 376 0.97

2 12 0.1 4.4 7.6 2.4 1 19 378 396 378 401 0.90

3 12 3.7e-07 1.6e-05 24.8 1.8 2 23 479 500 478 500 0.97

4 12 1.3e-05 0.00058 19.8 0.3 1 23 506 528 506 528 0.97

5 12 0.00013 0.0056 16.7 1.3 1 23 534 556 534 556 0.98

6 12 1.4e-05 0.00061 19.8 1.7 1 23 562 584 562 584 0.98

7 12 0.00064 0.028 14.6 1.2 1 23 590 612 590 612 0.98

8 12 2.2e-07 9.4e-06 25.5 1.7 1 23 620 642 620 642 0.98

9 12 0.00048 0.021 14.9 0.2 1 23 648 670 648 670 0.97

10 12 1.9e-05 0.00081 19.4 1.3 1 23 676 698 676 698 0.98

11 12 0.0017 0.074 13.2 0.5 1 23 704 726 704 726 0.97

12 12 1.5e-05 0.00065 19.7 0.8 1 23 732 754 732 754 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7e-05	0.0031	17.6	1.8	1	23	354	376	354	376	0.97
2	12	0.1	4.4	7.6	2.4	1	19	378	396	378	401	0.90
3	12	3.7e-07	1.6e-05	24.8	1.8	2	23	479	500	478	500	0.97
4	12	1.3e-05	0.00058	19.8	0.3	1	23	506	528	506	528	0.97
5	12	0.00013	0.0056	16.7	1.3	1	23	534	556	534	556	0.98
6	12	1.4e-05	0.00061	19.8	1.7	1	23	562	584	562	584	0.98
7	12	0.00064	0.028	14.6	1.2	1	23	590	612	590	612	0.98
8	12	2.2e-07	9.4e-06	25.5	1.7	1	23	620	642	620	642	0.98
9	12	0.00048	0.021	14.9	0.2	1	23	648	670	648	670	0.97
10	12	1.9e-05	0.00081	19.4	1.3	1	23	676	698	676	698	0.98
11	12	0.0017	0.074	13.2	0.5	1	23	704	726	704	726	0.97
12	12	1.5e-05	0.00065	19.7	0.8	1	23	732	754	732	754	0.97

Sequence Information

Coding Sequence: atGGCCACTGGTGAAGACCCGGCACGATATAATGAATTATGTAGACTTTGTGcagcaaaaacaacaatgttaTTAGGTGTCCACATATTCCAGAATGATGGTATTATGGGACAATTacggaaaaaaatcgaaaccTGTCTTCCTATACAAATTCATGAAACTGATGAACTTCCAAAAATGGTTTGtgaaaattgtctatttaaattgaatcTATTGTCGGAATTTCGTGAAAAAACCCTACGCACTGAACGTCTACTATTAGGACTAATTAAAGgaattaattctaataaacaagaagaacaacaacaacaacaacaagagccagttaatattgtttcaattgattctGATTTAATAATGgtacaacatcaacaattattaaataatcacGATATATCTAATGTTGGTGAACTACATGATTTACATCAATTAGGAAGCAGGGAACAAATGATTGTTGGtcatgaaattattttatcacatcatcatcatcatcatcatcaaaatgttgacataaataatcataatttagaTAATCTTGATTTGAATCATCACGAATTAACAACACAAGACTTATCAAATCATAGTTTACAAACACAAGATTCAATTTTAGTTGAAACAACTAATGATCGTtatagtaatgataatttagaattaatacaccatcaacaattattaaacgaTCAATTCCGGTTACAACATGAATTACATGTTAATATGAATGAAACAGATGGTGTTGATGATATTGGTTTGGAAACAGGACTGGATGATCAAGTTATTGAACAAAATATGCAACATTCAGAGCCCGATTATCATATAACTGATGATAAGAAACATCTCAATTATCATGATACACCGTTAAATAGTACAAATCATAAGGAAAAAATCGAGTGTTTAAAAAACGAAGatagtaatagtaatttattgattgatggtgaattacataaaactaatgaaataACAAGTAAAGGTGTCTATATAATACAAACGAATGAAAATAGTTGTAATCCAAATTCgatacaatcaacaacaacaacaacaacatcaaatgaAACTGattggttttgttgtaatatctGTGGTAAAGCatataaagaagaaacaaattttGAAGCACATTATTCAACACATTTCCACAAATGTGACATATGTAGTGCTATTTTTATGAatcaaaatctattaaatacaCACTGTAAAGAAAtgcataatgataatataataaaagatgaacaacacaatcaaaaatcaataaagacACGTTTGAAACGTGCAACATTACCAATTAATcgaaacaataatgataataatacagatagtaatagtgataatgaatTCGAACGaaatagtgatgatgatgaagaaactgaaaataatacaacaatatctGATGTACCTGAAAAAGAGAATAATAGTAAAAAGAAGATTTGGTCCCCGAAAGTTTGTACAGAATGTGGAAAATcgtataaaacaaattataaattgaatgaacATATGAGGAAACATAccggtgaaaaaccatataaatgtaCAGATTGTGATAAGGAATTTCGATCGAAAATCGGATTAGCTCAACATGCTGCCAAACATACAGGTAAATATGATTATGCTTGTCCGACATGTGGAAAAGGTTTTCAATGTAAAAGTTATCTAATGGTACATCAACGAGTCCATTCAGATATTAAACCATATCCATGTACAACTTGTGGAcgtaattttaaaacaaaacaatcattattgGATCATACAAATCGACATCTGGGTGTTAAACCGTACATGTGTGAAACTTGTGGTCGTGGTTTTATAACAAAAgGTTTATGTAAAGCCCATCAAAAGGTCCATACTGGTCTAGATAATCGGAAATATTCGTGTAaagtttgtaataaaatgtttgtCTCGAAAAGTTATCTACAAACACATTTACGGATACATACTGGTGAGAAACCGTTTATGTGTGAGGTTTGTGGTAAAGGGTTTCTAACAAAAGTCGATTTACGAATTCATACAACAATGCATACTGGTGAGAAATCGTATGTTTGTGAAATGTGTGGTAAAGCTTTTGCTCGACGTGATGCTCTCAGGTGTCACAGACGATCACATACCGGTGAACGTCCATATAgTTGTGATTTATGTGGTCAAACATTTACACAATTCACACCGATGGCAATCCATAAACGATTACATACAGGAGAAAGACCGTACGCTTGTGAGACGTGTGGTAAAACGTTTGTGTCACGATCGACAATGATGTCGCATGCTAAAAAACATTTACAGTAA
Protein Sequence: MATGEDPARYNELCRLCAAKTTMLLGVHIFQNDGIMGQLRKKIETCLPIQIHETDELPKMVCENCLFKLNLLSEFREKTLRTERLLLGLIKGINSNKQEEQQQQQQEPVNIVSIDSDLIMVQHQQLLNNHDISNVGELHDLHQLGSREQMIVGHEIILSHHHHHHHQNVDINNHNLDNLDLNHHELTTQDLSNHSLQTQDSILVETTNDRYSNDNLELIHHQQLLNDQFRLQHELHVNMNETDGVDDIGLETGLDDQVIEQNMQHSEPDYHITDDKKHLNYHDTPLNSTNHKEKIECLKNEDSNSNLLIDGELHKTNEITSKGVYIIQTNENSCNPNSIQSTTTTTTSNETDWFCCNICGKAYKEETNFEAHYSTHFHKCDICSAIFMNQNLLNTHCKEMHNDNIIKDEQHNQKSIKTRLKRATLPINRNNNDNNTDSNSDNEFERNSDDDEETENNTTISDVPEKENNSKKKIWSPKVCTECGKSYKTNYKLNEHMRKHTGEKPYKCTDCDKEFRSKIGLAQHAAKHTGKYDYACPTCGKGFQCKSYLMVHQRVHSDIKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYMCETCGRGFITKGLCKAHQKVHTGLDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTKVDLRIHTTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYACETCGKTFVSRSTMMSHAKKHLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987315;
90% Identity: -
80% Identity: -