Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010000617.1:42752-46072[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.6e-05 0.0016 18.5 0.7 1 23 176 198 176 198 0.95

2 15 0.0016 0.07 13.3 1.2 3 23 206 226 205 226 0.99

3 15 0.00014 0.006 16.7 0.1 1 23 334 356 334 356 0.98

4 15 0.04 1.7 8.9 0.1 1 23 362 385 362 385 0.94

5 15 4.4e-07 1.9e-05 24.5 3.0 1 23 417 439 417 439 0.98

6 15 0.0076 0.33 11.2 0.0 1 23 452 474 452 474 0.94

7 15 0.084 3.7 7.9 0.4 1 23 480 503 480 503 0.95

8 15 0.076 3.3 8.0 1.9 2 19 511 528 511 529 0.96

9 15 0.0003 0.013 15.6 3.6 1 23 538 560 538 560 0.97

10 15 0.0045 0.19 11.9 0.3 2 23 566 587 565 587 0.96

11 15 1.2e-05 0.0005 20.0 0.4 1 23 595 617 595 617 0.98

12 15 0.005 0.22 11.7 0.2 3 23 625 645 623 645 0.97

13 15 0.00016 0.0069 16.5 0.3 1 23 651 673 651 674 0.95

14 15 0.046 2 8.7 1.5 1 23 688 710 688 710 0.96

15 15 0.0017 0.075 13.2 0.1 1 20 1083 1102 1083 1105 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.6e-05	0.0016	18.5	0.7	1	23	176	198	176	198	0.95
2	15	0.0016	0.07	13.3	1.2	3	23	206	226	205	226	0.99
3	15	0.00014	0.006	16.7	0.1	1	23	334	356	334	356	0.98
4	15	0.04	1.7	8.9	0.1	1	23	362	385	362	385	0.94
5	15	4.4e-07	1.9e-05	24.5	3.0	1	23	417	439	417	439	0.98
6	15	0.0076	0.33	11.2	0.0	1	23	452	474	452	474	0.94
7	15	0.084	3.7	7.9	0.4	1	23	480	503	480	503	0.95
8	15	0.076	3.3	8.0	1.9	2	19	511	528	511	529	0.96
9	15	0.0003	0.013	15.6	3.6	1	23	538	560	538	560	0.97
10	15	0.0045	0.19	11.9	0.3	2	23	566	587	565	587	0.96
11	15	1.2e-05	0.0005	20.0	0.4	1	23	595	617	595	617	0.98
12	15	0.005	0.22	11.7	0.2	3	23	625	645	623	645	0.97
13	15	0.00016	0.0069	16.5	0.3	1	23	651	673	651	674	0.95
14	15	0.046	2	8.7	1.5	1	23	688	710	688	710	0.96
15	15	0.0017	0.075	13.2	0.1	1	20	1083	1102	1083	1105	0.94

Sequence Information

Coding Sequence: ATGGAGGATAATTTTGCATTAAGTTGGGAGGATTCAACAACGGTTGTCCAAGGTGAAGAAGTAATTTGTAgtatagaaaatgaaatattaccGAGTGAATCGGAAGAATTTACTGGTGTCGTCTGTAGTGATGAATCACcaaccaaacaacaacaacaacaatcacaaatTGAAGAAGTAGTAATAGGAGATGGTGATCAAGAAGAAGTTGTAGAACAAGAgaatattgtttatataacTGAAGATAATGTATTGGTTATGGATTCGGGTGATGGtactggtggtggtagtgctggtgttgttgttgaaggtgaacaaacaccaacaactgataatgattttcaacaacaatttatggATTGTCAAGTAACTGAAGAGATTGTAACAGAACAATGGGATGAAAGTTGTCCAGAAGAgattgttgttggtagtgAAGAAGCTGTTGGTGGTACCGAAGAACAAACAAATGAAGATTTTGATATACCATTACCAACTGATCAAGATGAATATACAGCATCAAGACCATATCCATGTGATTTTTGTAGTCGACGTTTTCGTAAAAAAGCGAATTTAATGAATCATATGGTTGCACATCAAACAGATCGTCCACATGGTTGTAATTTATGTGGTGTACGTTATATAAGAAAATGTGatttaatgaatcatttaaaaattcatgcTTATATACCGGAAACTGATGgtttagaagaagaagaaacacaacaattaGATGAATCAGATCAAGAGAAACGTATTAGTAAACGAACAAAACCATTTTCACGACGTAATAAACGAAAAGTTAAAGAGgaatatgaaaattatgaaGGTGATGAAACTGGTGCATCCAGTTCCAAATCGTATAATTATGTTGATGAAGATATGCGTTTAATGGAAGCAATGGAGAATAATGTTAAACCTGATTATACTGAATATAATGAATATATAACAGAGAATCAAACTGTTGAAGTACGTTATCCAATAACAGATCCACGTAAACCGTTTGTATGTCAACATTGTGGCGTTGGTTTTGCTAGAGAGAAAGCATTAGCATCACATGCTCGTATACATGGTGGTGATAGTCCATTTGAATGTCAGAAATGTGGTGAAATGTTTTGGGATTTAGCATTAATGCGTGAACATGTACGTGCAAAACATGGTGGTGATATTGATGATCTTATTGAtgagaatgatgatgatgatgatgaagaagatgatgattattCGGAAGAAGAGACAAAATATGGTACATTTTATTGTTCTGTATGTGGTTTATCATTTCATCGACAAGATAATTTGAAACGTCATCAACGTGTCCATATCAAAGAAGAATATATAAATGATCATGAATTTGGACATATATGTAATGTATGTGGTGAATCATTCCCTGGTGCATTAGAATTATTAGCACATGCTGAAGTACATGCACGTGGTTCGGAACATCGTTGTATGATATGTGGTGAAGTATGTACAGATGACCAAGCAGTTGCTGCACATGTGCAATCAAAACATGGTAAAACATTACCATCAAATACGTGTATGTTATGTGGACGGACATGTAAAGACCGTCgtacattattaaaacattcatGGGAACATTCAAAAGAGAAAAGTTTTGCATGTTCGAAATGTGCAAAAACATTTCATAATAAAGCTCGATTAAAACGTCATATGTTATCGCATCGTAATAAAGTTGTTTCATGTGATGTATGTGGTGAAGAGTTCCCTGATGGACGTTCATTGATGAATCATCGACATAGTCATAGTAGTTTATCTGGACGACAATTTCCATGTCGTGAATGTGGTAAAACATTTGGTTCACGTAGTTCCCAACAGATCCATATACGAATACATACCGGTGAACGGCCGTATGGTTGTCGATTTTGTTGGAAAGCATTTGCCGATGGTGGTACATTAAGAAAACATGAACGTATACATACCGGTGAGAAACCGTATGCATGTGCTGTATGTCCACGTGCATTCAATCAACGAGTTGTTTTAAGAGAACATATACGTTCACATCATTCAGGACCTGATCCGAAATATTCACATAGTGTTACACCGTATTGTTGTTCAGTATGTTCGGATATGTTTGCCACATCACAAGATCTAATTGTACATTTAATACATCATTGCGATATGAATACAGCTATGAAACGGCAACCACAAGTTGGTCCAAGAAAATATAAACGTCGACGAAAATTGAAACCACACGAATTGGAAATGATATCAAGTAAAGTTGATGATGaaatggatgatgatgatgaacaacaacaacaacaacaacaacaacaacaacaacagcaagaGCAATCACcacatcatcaacaaccaccacaacaacaacaaaatatatattcagATTCGGAAGAGGATCGTGAAATACGTAAAAAAGGTAATAAGAGATTCAAGAAAAATTCCCCGAAAGCAAATCTAAATGAAACAtacaatgatttttataatagttgttcatcaacaattgaaaatataaattcaatagttaattcaaaaacaacaaattcaaagaCAAAACGTAAAACTAAAAATGAAACTACAGTACCATCACGTCCGAAAATGATCCATACACAAAAGACACGTGTACCAGTTGATACCGGTGAAGATGGTAAAGTACGACATAAAACTAAAACATTAGTAACACGTACACAACCAACTGAATTGAAATCATCAAGTGGTGATCGTATACGGCCACGTACAAAGAATGTCAGTTATCATATActgaataatgaaaaattaccattgGCTACGTTCCCAGAAGATGATCAAGCtgttagtaatttattaaaagagaatTTAAATGATGAACAACAGACAACCAATAATGGTGATGTTGTAATGGAACAACCAACTGAACAAACACCAGAAGTTGCATCTGAACAAGTTATTGAAAGTGATAATGGTGCATTtccaacaaatattattaaaataacatcaACTCCGACacaattacataatttacGTCCTGGTCGTCATTTAATTGTACCTGGTAGTAAAGTTGTACGTTTAGTTAAAGGTGGTATGattgtaacaaaaacaaaagagaaagaaaagaaaactaataatGAACCGGAAAATATTTTACCAGATGTTGAAACATCTACAacagataatgatgataatgttaataataataataaaaataaaaataagaaaaaaatcaaacggGAAATTGTTGATCCAAGTCCATTACATGAACTAGCTGAAATATCAATGCAACATGcacaaaatatatttaaatgtgaaaTGTGTAGTGCAGTGTTCTCTGATAGAAGTAAACTATTGGATCATGTGCCCATACATATATGA
Protein Sequence: MEDNFALSWEDSTTVVQGEEVICSIENEILPSESEEFTGVVCSDESPTKQQQQQSQIEEVVIGDGDQEEVVEQENIVYITEDNVLVMDSGDGTGGGSAGVVVEGEQTPTTDNDFQQQFMDCQVTEEIVTEQWDESCPEEIVVGSEEAVGGTEEQTNEDFDIPLPTDQDEYTASRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPETDGLEEEETQQLDESDQEKRISKRTKPFSRRNKRKVKEEYENYEGDETGASSSKSYNYVDEDMRLMEAMENNVKPDYTEYNEYITENQTVEVRYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDLALMREHVRAKHGGDIDDLIDENDDDDDEEDDDYSEEETKYGTFYCSVCGLSFHRQDNLKRHQRVHIKEEYINDHEFGHICNVCGESFPGALELLAHAEVHARGSEHRCMICGEVCTDDQAVAAHVQSKHGKTLPSNTCMLCGRTCKDRRTLLKHSWEHSKEKSFACSKCAKTFHNKARLKRHMLSHRNKVVSCDVCGEEFPDGRSLMNHRHSHSSLSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSVTPYCCSVCSDMFATSQDLIVHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEMISSKVDDEMDDDDEQQQQQQQQQQQQQEQSPHHQQPPQQQQNIYSDSEEDREIRKKGNKRFKKNSPKANLNETYNDFYNSCSSTIENINSIVNSKTTNSKTKRKTKNETTVPSRPKMIHTQKTRVPVDTGEDGKVRHKTKTLVTRTQPTELKSSSGDRIRPRTKNVSYHILNNEKLPLATFPEDDQAVSNLLKENLNDEQQTTNNGDVVMEQPTEQTPEVASEQVIESDNGAFPTNIIKITSTPTQLHNLRPGRHLIVPGSKVVRLVKGGMIVTKTKEKEKKTNNEPENILPDVETSTTDNDDNVNNNNKNKNKKKIKREIVDPSPLHELAEISMQHAQNIFKCEMCSAVFSDRSKLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987317;
90% Identity: -
80% Identity: -