Ipal002895.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000175.1:29533-34753[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.7e-05 0.0012 18.9 1.1 2 23 140 162 140 162 0.97 2 21 2.2 95 3.4 3.5 1 21 282 302 282 303 0.92 3 21 0.49 21 5.5 4.8 1 23 332 355 332 355 0.92 4 21 1.2 53 4.2 0.1 5 19 365 379 363 382 0.91 5 21 0.0083 0.36 11.1 0.9 1 23 388 411 388 411 0.91 6 21 0.00025 0.011 15.8 0.3 3 23 492 512 491 512 0.98 7 21 0.14 6 7.2 0.9 1 23 530 551 530 551 0.88 8 21 0.00032 0.014 15.5 0.3 3 23 556 576 555 576 0.95 9 21 0.0026 0.11 12.7 0.0 2 21 607 626 606 627 0.92 10 21 0.035 1.5 9.1 0.4 1 23 674 697 674 697 0.96 11 21 1.9 83 3.6 2.3 2 23 711 732 710 732 0.96 12 21 0.00094 0.041 14.0 8.3 1 21 768 788 768 790 0.95 13 21 0.02 0.85 9.9 1.0 3 23 811 832 811 832 0.93 14 21 0.00044 0.019 15.1 2.3 1 23 857 879 857 879 0.98 15 21 0.00034 0.015 15.4 5.2 1 23 896 919 896 919 0.95 16 21 0.004 0.17 12.1 0.2 1 23 936 958 936 958 0.93 17 21 0.062 2.7 8.3 0.1 1 23 991 1014 991 1014 0.95 18 21 0.0012 0.051 13.7 1.8 2 23 1026 1047 1025 1047 0.96 19 21 8.3e-05 0.0036 17.3 0.5 1 23 1057 1080 1057 1080 0.96 20 21 3.3e-06 0.00014 21.8 0.4 1 23 1088 1110 1088 1110 0.98 21 21 0.0039 0.17 12.1 0.1 1 23 1123 1146 1123 1146 0.94
Sequence Information
- Coding Sequence
- ATGATACCGTACACGCAAAAGGTAACCGCTGAAGATAAACTAACAACAATGATTTGCAATCAATGTATTGAGAAtgtcaacaattattacactTTCAAGAAAACATGTTCggaaaatcagaaaaaattaCTCGAATGGTTGAAAATAAACTCTACTGATATACCTGGGaatattcaaataaaagaagaaCCCATTGATGCTGAACCTGAATCACCTGATGTTGTAATCAGTGGTGATGTTCCTGTTGTCAAGAATGAACCAATTGATAgtgatgattataatgatcTACCACCCCCATTGACACCACATAATCATCaaaatggtgatgatgatatggATTTGGAGGTTGTTTCTGATCAACAGAAGAAACCAGAAGACCAGCAAGatgATGCTCCTAATTTAGAGCCTAATCCCCGTCAATGTACAATTTGCGATAAAATGTTTAGTTCGCGAGCAAATCGTAAGAAACATGAACGAGTCATCCATGGGATTAATCATAATATTAGTAGTCTTACTGGAGATGCAACATTATCATCACAAGATGATCAGTCTCAGAGCTCATGTGATTCTCAAGCTTTATCACCattaaaaccaacaacaactgaaCCAACAGCTGAGGAAAAGAAAATCTTGTTTGCAGCCggtttaaaattattacaaaccaATTCAACACCTCCAATATCATTAGAAGCATTATCAAAACTTGAATTGAGTTATATCGAAAAATGTAAAGCAATGTCGATAATGTACCGTTCATTGATATGTGCATGTCATAATGTACCACATCCAAATTTGAAAGGTTTATTGTCACATTTACGTTCAATTGGTATATGGTTTCCGGTATTTACATGTTATCATTGTATGATAACATTTACTGATCGTTCATCAAGTACTCGGCATCATTTACGTTGTACACGTACAAATCTGGAAACATTGgtgaaattatcgaatttaaaGAAACGTAGTGAAGTTAAGACAagattatatcaaaattataaatgtacAATATGTCGTTTTATGTACAGTTTCCATGAAGATTTCTGTACACATGTTGATGAGGAACATTCACAAATTGAATTCCCATTAACATGTACATGTGAACGGGTGTTTACAAATTTAGAAGATTATAAAGACCATGCATATGTTGGTTGTTTAGTTGAGTTCTATTGTGATATTTGTCATATTACTGTTAAGACATTAGATGCTTTCCAGAAGCATGCTAGTGAAAATCATGATAATTCTGAAGGTTTTCCATTGGTACAACAGGATGGTTATAGACAACGACGTGAACGTTATTCATTACCACATACAGCTGCTGTTAAACGTGAACATTCTGaagataatattatttatagtaaacgTCGTAGTACATTCTATAAACAACGTTTCGTTGATAGTGAAGAGGAATGTAGcagtggtagtggtagtaaaGTGATAAATCCGatgtttttgcaaaaaattccCGGTAAAATATGTCCAATTTGTTCAAGAGAATAtgcaacaaataacaatatgTTACGACATTATCGTAGTCATgcatttgatgataaaaacaagacgaataaagaaaataaagatgatTCCTTGTATTGTTGTCCGGATTGTGGTGGTATGTTTACAACTGGGGAATGGGAAAAACATAAAGAACAACATAAGAAGAAAATCTGTAATGAATGTGGTAAAGTATTCCAGTTTCAATCGGAATTAGATCAACATCGAAGTGCACATTTGAATATTAAAGTTTATCGTGATTCGAAAACACAATCGTATCGGAGTACAATGGCTAGTCCGAATAGTACTGAAACgaatattgttgtaatgtgTGAGATATGTGATGCAATCTTTCCTACAAAGGAGCAATTAAAAGAACATAAATTGACACGTGAATGTCAGCAGCAACAGCGAccacaacagaaacaacaacaacgacaacaacaacagaagcagccacaacaacaacaaccacaacaacaagggCATGATACTGAAGAAGATGAAGGTAGTCCTGAATCGAGAAAGTACGCATGTTCattatgcaataaaaattatacagcTTATGGTGGTTTATGGGATCATAATCGTAAAAAACATCCCGAAAATAAAACACCATTCTGTAAAGATTTTCCCAAAGAATGTAAATCGTGTAATAAATTGTTCCATACTGGTGGTTCATGGTATATGCATCAACAGATGCACGAAAAAACCCGTAATAATCTCTTGAATATCCGTCAAAAAGAATCTAgttcatcatcaccatcatcacaaATGGATGATGAACCcggtgatgataatgaatcaTATCATACATGTAAACGTTGTTTTAAAGTATTTTCAAATcgttataatttaaaaaatcatatgAAATGTCATGGTATTAATCCACATCCAGGTGGTAAaacgaatttaaaaaataaaggtaAAAAAGTCTGGTGTGATATTTGTCATACACCATTCGATAGTagtcaacaattattacaacataaaTCTGAAGAACATGCCGAAACTGAAGATACAATGCCAAGTTTATCAGATGAAACGGAAGAGATTGATGTTAAAGCaccatttatatttacatgtGATGTTTGTGTAcaaacatttacaacaaaattatcattaaagaAACATAAAGAGAAACATGCACAAGAACGTGGTATGTTTATGCATCCGAATAAACGGAAACCATTTCattcatgtaaatattgtaaattatcatttaataatatggatcaattaaatcatcataTGAATCAAGAACATAATGAAACTGCCGGACGTGtagtaaaaaataaagagaaaaccaaaaatttcatatgTAATCTGTGTAAGAAACCATTCCAAAGTTCATCAGCAATGTATGCACATTTGGGTTGGCATAAACGTGGTAAAATCTATGAACAATACGTACCAGAAACACGTAAACCAATTAAAGTGAAAATCAAACAAGAACCAAAAGACGATGTAGTGCCggtatttaaatgtaaaacatGTAAAGCTGTCCTACCAAATGATACAGCATTACAAATCCATATATTGGAGAAACATCGTGAAATCAATGCAATTATATTACCATCAACTAGATGTAATATGTGCAATTTAGATTTTACAACACAAGATGAATATGAACAACATAAACGATTTCATAATTATGTGGAGAATCCAAGGAAAACATTTCCATGTAATCATTGTCCGGCTGCATTTAGTCGTATTGATACATTAAATGcacatttaaaacaataccaTCTGGATCAAATTAAACAGGAATATAATTGTCCGGAATGTAATCGtatatttgataaacaaaGTTCATTAACAATACATTTAAAAGTACATGAAAAACAACGTGTTAGTGCACCGACAAGACCATTATTTTCATGTTCGATTTGTAATTTAGGTTTTAATTTACCGAAAGATTTACGAATTCATACAATTCAAGCTCATCCGTTTTGA
- Protein Sequence
- MIPYTQKVTAEDKLTTMICNQCIENVNNYYTFKKTCSENQKKLLEWLKINSTDIPGNIQIKEEPIDAEPESPDVVISGDVPVVKNEPIDSDDYNDLPPPLTPHNHQNGDDDMDLEVVSDQQKKPEDQQDDAPNLEPNPRQCTICDKMFSSRANRKKHERVIHGINHNISSLTGDATLSSQDDQSQSSCDSQALSPLKPTTTEPTAEEKKILFAAGLKLLQTNSTPPISLEALSKLELSYIEKCKAMSIMYRSLICACHNVPHPNLKGLLSHLRSIGIWFPVFTCYHCMITFTDRSSSTRHHLRCTRTNLETLVKLSNLKKRSEVKTRLYQNYKCTICRFMYSFHEDFCTHVDEEHSQIEFPLTCTCERVFTNLEDYKDHAYVGCLVEFYCDICHITVKTLDAFQKHASENHDNSEGFPLVQQDGYRQRRERYSLPHTAAVKREHSEDNIIYSKRRSTFYKQRFVDSEEECSSGSGSKVINPMFLQKIPGKICPICSREYATNNNMLRHYRSHAFDDKNKTNKENKDDSLYCCPDCGGMFTTGEWEKHKEQHKKKICNECGKVFQFQSELDQHRSAHLNIKVYRDSKTQSYRSTMASPNSTETNIVVMCEICDAIFPTKEQLKEHKLTRECQQQQRPQQKQQQRQQQQKQPQQQQPQQQGHDTEEDEGSPESRKYACSLCNKNYTAYGGLWDHNRKKHPENKTPFCKDFPKECKSCNKLFHTGGSWYMHQQMHEKTRNNLLNIRQKESSSSSPSSQMDDEPGDDNESYHTCKRCFKVFSNRYNLKNHMKCHGINPHPGGKTNLKNKGKKVWCDICHTPFDSSQQLLQHKSEEHAETEDTMPSLSDETEEIDVKAPFIFTCDVCVQTFTTKLSLKKHKEKHAQERGMFMHPNKRKPFHSCKYCKLSFNNMDQLNHHMNQEHNETAGRVVKNKEKTKNFICNLCKKPFQSSSAMYAHLGWHKRGKIYEQYVPETRKPIKVKIKQEPKDDVVPVFKCKTCKAVLPNDTALQIHILEKHREINAIILPSTRCNMCNLDFTTQDEYEQHKRFHNYVENPRKTFPCNHCPAAFSRIDTLNAHLKQYHLDQIKQEYNCPECNRIFDKQSSLTIHLKVHEKQRVSAPTRPLFSCSICNLGFNLPKDLRIHTIQAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -