Ipal008850.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- KRBA2_1
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001058.1:25188-30735[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7e-05 0.00075 19.5 0.7 1 23 12 34 12 34 0.92 2 13 1.2e-05 0.00053 20.0 1.8 1 23 40 63 40 64 0.97 3 13 0.00032 0.014 15.5 3.9 1 22 69 90 69 93 0.91 4 13 0.0019 0.081 13.1 1.1 5 23 335 353 334 353 0.95 5 13 0.00079 0.034 14.3 4.2 1 23 359 381 359 381 0.98 6 13 3.6e-06 0.00015 21.7 1.2 1 23 387 409 387 409 0.96 7 13 1.3e-06 5.5e-05 23.1 0.5 1 23 415 437 415 437 0.98 8 13 0.00053 0.023 14.8 0.4 1 23 447 470 447 470 0.97 9 13 5.3e-06 0.00023 21.1 5.3 1 23 475 497 475 497 0.98 10 13 0.0008 0.035 14.3 7.9 1 23 503 525 503 525 0.98 11 13 4.3e-06 0.00019 21.4 0.5 1 23 531 553 531 553 0.97 12 13 0.00028 0.012 15.7 0.5 1 23 559 581 559 581 0.97 13 13 5.2e-06 0.00023 21.1 0.9 1 23 592 615 592 615 0.96
Sequence Information
- Coding Sequence
- atgcATCTGAAAGTGCATACAGATGAACGCCGATTTATTTGTGAACGTTGTGGTAAAACATTTCGAACAAATCCACAATTACGTGCACATTTCGTTCAGCATACCggtgaaaaaccatttgtatgtaaaatatgtaatagaaattttccatatCGTGCAAGTTTAAGTGTACATTTACGTACACAACATCATAATGgaaaaccatataaatgtcaTCTTTGTGATAAACGTTTTGCAATACAATGTCTTTTAAAAAGacatttattatcagtaacacatacagCCAAAATGAgtgatgatttagaaaatcgCAAAAAAGACTTTGAAGCCAACTTCAATAAACTTTATATGTTATCATCAAAAAGATCTACACTCCTTTTAGAAGatgattataaattgataataaatgagcTAAAAGAAGCACAAAGCTTACGAGAATCTGGTAGATCACTTTCATCGAAACAATATCGAAGATTGAAAAGGTACGATTTGTTGACAATTGATGGACAACAGGAAAGATTAATAGCCAAACGACATACTGACAATGAAGATATGAAATATTATGTTCATCGTGACGAATTGTTTGATATTGTCCATTCGGTCCATATAAATACAGGCcataaaaaagagaaagGCATGGAACTTGAACtgaagaaaaaatatgttaatattaCCCgggaaattataaatttgtatcTTAATAAATGTGAAGAGTGTCAGCTAAAGAGACAAAGCCTAACAAAATATTTAGTTAGGAAGCCGATTATTTCCAATTCTATGATGAACTTCGGATGTCACAGAGGAATCGACACAAGTCCATCTGAAGCCATGTTTGGTACTAGACAGGTACCCAATGATATTCCGGACAAATTAGAAAGTGAAGAAGATCTGGAAAAAGTAATGAAACGCAGAGGAAATGAAGAAGATAACTCACTGAAAATTAGTGAAGAAGAGATTGTGGCAAGCCGATATAATGCCGAATCTCAAGAAGATACTAACAATGGTtgtaataaaagttttcgACATCCGAAACGATTAGAATATCATATTAAATTACATAATCgtgaaaaattacataaatgttATGTGTGTGATAGAATTTTTCCACTCAAAAAGAATTTATGTATGCATTTAAAAGTGCATACAGATAAACGACGATTTATTTGTGAACGTTGTGGtaaaaaatttcgaactaaTAGTGAATTACGTGTACATTTCGTTACACATACcggtgaaaaaccatttatatgtaaaatttgcaatagaaattttccatatCGTGCAAGTTTAAATGTACATATACGTACACATTCTGTTAAACGTATTCGAGAAAAACTATTTGTATGTAAACTATGtaatgcaaatttttcatttataacaaGTTTAAATGTACATTTACGTATACAACATgatgaaaaaccatataaatgtcaTCTATGTGATAAATGTTTTACAGTAAAGGGATCTCTAAAAAATCATTTAgtaacacatacaggtgaaaaacaacataaatgtcatgtttgtaataaaaagtATGCACATAAGAAAGGTTTACAATTGCatttacaaaaacataatGGTAATAAAGCGTATAGTTGTGATtattgtggtaaaaaatttGCTGTAAAACGATCcttaaatgatcatttaaatGGCCATACCGGCGAGAAACCGtatgtttgtaaaatttgtaatcaAGGTTTTCCATATCGCAtaagtttatttaaacatgAAAAGGGACATACTGGTGACATCCTTACAGATCAGGGACAATTCCcatgtaaaatttgtaataaagtttTAACAAGACGATCGTATTTAAGAAATCATCTAGCAAAAATGCATAATGAAACCGACATCAAATGA
- Protein Sequence
- MHLKVHTDERRFICERCGKTFRTNPQLRAHFVQHTGEKPFVCKICNRNFPYRASLSVHLRTQHHNGKPYKCHLCDKRFAIQCLLKRHLLSVTHTAKMSDDLENRKKDFEANFNKLYMLSSKRSTLLLEDDYKLIINELKEAQSLRESGRSLSSKQYRRLKRYDLLTIDGQQERLIAKRHTDNEDMKYYVHRDELFDIVHSVHINTGHKKEKGMELELKKKYVNITREIINLYLNKCEECQLKRQSLTKYLVRKPIISNSMMNFGCHRGIDTSPSEAMFGTRQVPNDIPDKLESEEDLEKVMKRRGNEEDNSLKISEEEIVASRYNAESQEDTNNGCNKSFRHPKRLEYHIKLHNREKLHKCYVCDRIFPLKKNLCMHLKVHTDKRRFICERCGKKFRTNSELRVHFVTHTGEKPFICKICNRNFPYRASLNVHIRTHSVKRIREKLFVCKLCNANFSFITSLNVHLRIQHDEKPYKCHLCDKCFTVKGSLKNHLVTHTGEKQHKCHVCNKKYAHKKGLQLHLQKHNGNKAYSCDYCGKKFAVKRSLNDHLNGHTGEKPYVCKICNQGFPYRISLFKHEKGHTGDILTDQGQFPCKICNKVLTRRSYLRNHLAKMHNETDIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -