Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010000297.1:60025-63039[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.9e-05 0.00084 19.3 1.4 2 23 79 100 78 100 0.97

2 15 4e-06 0.00017 21.5 1.5 1 23 106 129 106 129 0.97

3 15 0.0087 0.38 11.0 0.2 1 23 134 157 134 157 0.95

4 15 0.0004 0.017 15.2 2.3 1 23 162 184 162 184 0.97

5 15 6.4e-07 2.8e-05 24.0 1.6 1 23 190 212 190 212 0.99

6 15 4.8e-06 0.00021 21.2 2.9 1 23 216 238 216 238 0.98

7 15 2.5e-05 0.0011 19.0 0.8 1 23 244 267 244 267 0.96

8 15 3.4 1.5e+02 2.8 1.8 11 23 271 284 270 284 0.90

9 15 8.8e-06 0.00038 20.4 1.5 1 23 290 312 290 313 0.96

10 15 2.7 1.2e+02 3.2 0.1 1 23 318 341 318 341 0.87

11 15 0.00051 0.022 14.9 2.0 2 23 347 368 346 368 0.96

12 15 0.00019 0.0082 16.2 1.6 1 23 374 396 374 396 0.98

13 15 2.8e-05 0.0012 18.9 1.0 1 23 402 424 402 424 0.98

14 15 0.00024 0.01 15.9 0.3 1 23 430 453 430 453 0.97

15 15 5.1e-06 0.00022 21.2 0.4 1 23 459 481 459 481 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.9e-05	0.00084	19.3	1.4	2	23	79	100	78	100	0.97
2	15	4e-06	0.00017	21.5	1.5	1	23	106	129	106	129	0.97
3	15	0.0087	0.38	11.0	0.2	1	23	134	157	134	157	0.95
4	15	0.0004	0.017	15.2	2.3	1	23	162	184	162	184	0.97
5	15	6.4e-07	2.8e-05	24.0	1.6	1	23	190	212	190	212	0.99
6	15	4.8e-06	0.00021	21.2	2.9	1	23	216	238	216	238	0.98
7	15	2.5e-05	0.0011	19.0	0.8	1	23	244	267	244	267	0.96
8	15	3.4	1.5e+02	2.8	1.8	11	23	271	284	270	284	0.90
9	15	8.8e-06	0.00038	20.4	1.5	1	23	290	312	290	313	0.96
10	15	2.7	1.2e+02	3.2	0.1	1	23	318	341	318	341	0.87
11	15	0.00051	0.022	14.9	2.0	2	23	347	368	346	368	0.96
12	15	0.00019	0.0082	16.2	1.6	1	23	374	396	374	396	0.98
13	15	2.8e-05	0.0012	18.9	1.0	1	23	402	424	402	424	0.98
14	15	0.00024	0.01	15.9	0.3	1	23	430	453	430	453	0.97
15	15	5.1e-06	0.00022	21.2	0.4	1	23	459	481	459	481	0.98

Sequence Information

Coding Sequence: ATgatattaattggaaaaaatgaaGATTATCCTCCTGTTGATGCTTATAGTAGTAACGATGATAAGGTTTTGATTGAAGACCATcaaataaaagttgaaaatcCTTTTGAAATTGACGAACAacctaataattcattaataacgaatactaatcaaattaaagaaataattaatgatactGATGAACAATCAAGTCATAAGCAAGTCAGAAAGAGaagtaattttaaaagatCTATGTGCcatatttgtagtaaaatttATTCGAATGGTGGTAATTTAAGACGACATTTATTAACTCACACTGATAGTAAACCATTCGAATGTGATAAATGTGAGAAAACATATGTTGATAAGAgatcattaaaaaatcatataatgcGTTATCATGATCAGAAACGTTTCGTTTGTCGTGTTTGTAATGAAGGTTTTGAATTAGAAGAACATTTAAATGAACATGTAACTGTACAACATGATGGTGATCATTTTAAATGTCATGTGTGTAATAGGAATCTTGCCGATCGAAATTCATTTAAGAATCATATGGCAttacatttaaacaaaaagcCGTTTCAATGTAATGTGTGCAGTCAAAGTTTTATAAGTCgtagttatttgaaaatccATATGAATCGACATATTAGACCGTTTGTTTGTGATCATTGTGGCAAAACATTTACGGTAAAACATAGTCTATTAggacatttaaaaatacataccgGTGAGAAAACGTTCGTTTGTGAAACTTGTAATACTCGTTTTACATTTCGTTCAGGATTAGTGCGACATATACAACAAGAACATATGGGTGGAAAACAtaacaataatttaaaacgacATCTTTTATCATCTCACGAAGGTAAAAAACGTTTCGAATGTGCTAATTGTGAGAAAGCTTATACAGATAAGAGATCATTAAAAGTTCATATAATGCGTCATCATGGTGAGAAACGTTTCATTTGTGATATTTGCATGGATGGTTTTgaatcaaaacaatatttagaaGACCATGTAACTGCACAACATGATGGCCAACAACTCAAATGcaatttgtgtaataaaattcttgCACATCGAAGTACATTTAAGAATCATATGgcattacatttaaataagaaaCCGTTTCAATGTAATGTGTGCGATGAAAGTTTTGTATGTCGAGGTTCTTTAAAAATCCATTTAAATCGACATATTGGTGATAGACCGTTTGTTTGTGATCATTGTGGCAAAAGATTTATGGCAAAACAGAATCTATTAGAACATGTCAAGATACATACCGGTGACAAACCGTACGTTTGTGGAACTTGTAATGCTCGTTTTATATTTCGTCCAAGTCTAATGCGACATATACAACGTGAACATGTTGGTGAAAGGCCGTTTGTGTGTGGCATGTGTGGGAAgagttttatagaaaaaacaGTATTAAATCGACATGTAAAAACACATACTGGTTGA
Protein Sequence: MILIGKNEDYPPVDAYSSNDDKVLIEDHQIKVENPFEIDEQPNNSLITNTNQIKEIINDTDEQSSHKQVRKRSNFKRSMCHICSKIYSNGGNLRRHLLTHTDSKPFECDKCEKTYVDKRSLKNHIMRYHDQKRFVCRVCNEGFELEEHLNEHVTVQHDGDHFKCHVCNRNLADRNSFKNHMALHLNKKPFQCNVCSQSFISRSYLKIHMNRHIRPFVCDHCGKTFTVKHSLLGHLKIHTGEKTFVCETCNTRFTFRSGLVRHIQQEHMGGKHNNNLKRHLLSSHEGKKRFECANCEKAYTDKRSLKVHIMRHHGEKRFICDICMDGFESKQYLEDHVTAQHDGQQLKCNLCNKILAHRSTFKNHMALHLNKKPFQCNVCDESFVCRGSLKIHLNRHIGDRPFVCDHCGKRFMAKQNLLEHVKIHTGDKPYVCGTCNARFIFRPSLMRHIQREHVGERPFVCGMCGKSFIEKTVLNRHVKTHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -