Ipal002825.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000168.1:107874-111339[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00056 0.024 14.7 0.4 2 23 156 177 155 177 0.96 2 14 2.7e-05 0.0012 18.9 2.8 2 23 183 204 182 204 0.97 3 14 7.8e-05 0.0034 17.4 4.7 1 23 210 232 210 232 0.97 4 14 4.9e-05 0.0021 18.1 0.6 1 20 238 257 238 259 0.95 5 14 0.00035 0.015 15.4 0.2 1 23 266 288 266 288 0.97 6 14 2.1e-06 8.9e-05 22.4 5.5 1 23 463 485 463 485 0.97 7 14 6.8e-07 2.9e-05 23.9 1.6 1 23 491 513 491 513 0.98 8 14 6e-05 0.0026 17.8 1.7 1 23 518 541 518 541 0.95 9 14 0.0041 0.18 12.0 2.4 1 23 553 575 553 575 0.88 10 14 0.00039 0.017 15.2 8.4 1 23 581 603 581 603 0.98 11 14 1.9e-06 8.1e-05 22.5 0.5 1 23 610 632 610 632 0.96 12 14 3.5e-07 1.5e-05 24.8 0.9 3 23 640 660 638 660 0.96 13 14 1.7e-05 0.00075 19.5 0.1 1 23 666 688 666 688 0.99 14 14 0.048 2.1 8.7 0.7 1 23 693 716 693 716 0.97
Sequence Information
- Coding Sequence
- atggaaattattaaaattgatttagaacGTACATGTCGTACATGTAAACAACAATATGACGATATGGTTTCATTGTTTGAATTAACTGATTTAGGTGACGAATATCCCCGTATTGACGAGATGCTAATGGCTTGCACAGCTGTACAGgtTAAAGAGGGTGATGGAATGCCAACATTAATCTGTAAAGATTGTTTAGAGAAATTAAAAGGTGCATTTGTATTCAAGAAACAATGTAAAGAAGTTGAAGGCagtttaaaacaatatatacgacatattaatattgaattaattaatgaagaatTACCGAAAGAAATTGATGTTAGTGAAATTAAAAAGGAATTACAAGATTACAACTCTCTACCGGatTCCTTGGTTCAAGCTACTGGTACAGACAGCAAAGAACCCGAAGAACTATCGTCACAATTCGATTATATCCGTTTCattaacaacacaaatatGTTGTTAATATGTCGGGAATGTTATAAAGTATTTACAACATTAGATGGTTTAAAAGGACATAAACGTTTGCATATGggcaatttattgaaatgtaaatattgcGGTAAAGGTTATACAAGACAGACACATGTTGAACGTCATGAATCAACACATCGATTACAAAAAGTCCATGTgtgtaaaatatgtaataaaacattaacaaGAATTGAACATTTAAAACGACATCTAACAACACATTTAAAAGAGAAACCATACTCATGTAAAATCTGCAATAGAGGTTTTAATCGTTCGGATCATTTGGAATTACATACAGTTCGATGTAAAGGTGatagattatttatttgtgatatATGTAATAGAGGTTTTGCACGTGAAGATAGTATGGAAGTACATAAGAAATTACATGAAAACCAACAACCAGTCTTACCAACATTAgataatatcgataatataTCTGAAcattattatgaaattgatCGTGATCCGGATGTACATGATACTGTAATTAATTCAGATGCTGAAGATTATTTAGAACCATTTATTGAAGTTGAAGAGGGTGAtagtaaaacaaatataagaaaatatagaaaaagagatgataatgatgataataatgtaattgaagatatcaaaattacaataaccAATGATCCAGATGATACACAAATGGATATAACACAGAcagatgaaattattgatgagaaaaaacaaattaataataacggtggtggagatgatgatgatgatgatgaagagaTGGCAGATGATGGAGCTGATGataatCAATCAGAGGGAGGCGATTCTGATTATTTACCTACGAGACAGGCACCGAAAAGGCGTGGTCCTGGCCGTCCAAGAAAATATCCAGCGGGATCAGGACGACGTGGACGTGGTGGTCGACGCCAAAAACGTGATGATGATagAATCCACACATGTGAggtttgtaataaaagttttactcgtttaaatcatttaaaccGCCATATGAGTTCACATTCCACATTAAAACCATATGTATGTGAAATATGTAATCGTTCATTTACACGTCGAGACCATTTAGCACAACATGCCAAATCACATGAGAAACATGAATATGAATGTGATTTTTGTCAGAAGACTTTCAATAGAATTGATCAATTAGAGAAAcataaaactgtaaaacatACATTAGGCGATAagGCTATTGGTGAGAAGAAATTTGAATGTCATATCTGTAAGAAAACatttacaacagaaaaatatcgAGATATACATGTTAGTGGTCATTTAGGTGATAAAcgttttaaatgtaaaacCTGTGACAAgtgtttcttatcaaaatcgCATTTAAATGAACATATGAAGTTTCATAATGAAAATTCGAAGAAGTTTTTATGTTCAGAATGTGGACAACGATTCATACGCAATGATTATTTAGTTATACATATGAGAAGGCATCGTGgtgaaaaaacTCATCTTTGTACAATTTGTGGCCGTGGTTTTGGACGtgCCTATAATTTAACAGTCCATATGCGtacacatactggtgagaaACCTTATCAATGCACATATTGTGATGCAGCATTTGCTCAAGGCAATGATTTGAAAGCACACGTGCGCCGACATACTGGTGAACGTTTCCAATGCGAATTATGTACGGAAAGCTTTCTAATGGGTTATCTGTTGACACAACATAAACGAACAGTTCATGgtttaaATGTTGTAAGTAATATTCGCCGATTACAACcggttaataaaattaaacaagataTCGatgaaccaccaccaattaCAATTCCATTACCAAAGCCTGTTATACCTGATATTGTTCTATTTCCACAATTACATCAACGTTTAACAAGAGAATAA
- Protein Sequence
- MEIIKIDLERTCRTCKQQYDDMVSLFELTDLGDEYPRIDEMLMACTAVQVKEGDGMPTLICKDCLEKLKGAFVFKKQCKEVEGSLKQYIRHINIELINEELPKEIDVSEIKKELQDYNSLPDSLVQATGTDSKEPEELSSQFDYIRFINNTNMLLICRECYKVFTTLDGLKGHKRLHMGNLLKCKYCGKGYTRQTHVERHESTHRLQKVHVCKICNKTLTRIEHLKRHLTTHLKEKPYSCKICNRGFNRSDHLELHTVRCKGDRLFICDICNRGFAREDSMEVHKKLHENQQPVLPTLDNIDNISEHYYEIDRDPDVHDTVINSDAEDYLEPFIEVEEGDSKTNIRKYRKRDDNDDNNVIEDIKITITNDPDDTQMDITQTDEIIDEKKQINNNGGGDDDDDDEEMADDGADDNQSEGGDSDYLPTRQAPKRRGPGRPRKYPAGSGRRGRGGRRQKRDDDRIHTCEVCNKSFTRLNHLNRHMSSHSTLKPYVCEICNRSFTRRDHLAQHAKSHEKHEYECDFCQKTFNRIDQLEKHKTVKHTLGDKAIGEKKFECHICKKTFTTEKYRDIHVSGHLGDKRFKCKTCDKCFLSKSHLNEHMKFHNENSKKFLCSECGQRFIRNDYLVIHMRRHRGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVNKIKQDIDEPPPITIPLPKPVIPDIVLFPQLHQRLTRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -