Ipal004046.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000280.1:83557-85900[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00082 0.036 14.2 2.0 1 23 27 49 27 49 0.98 2 17 0.00032 0.014 15.5 3.0 1 23 54 77 54 77 0.98 3 17 3.6e-06 0.00016 21.6 0.7 2 23 84 105 83 105 0.94 4 17 4.6e-07 2e-05 24.4 0.7 1 23 111 134 111 134 0.98 5 17 0.00014 0.0063 16.6 3.6 1 23 139 161 139 161 0.98 6 17 0.00033 0.014 15.5 5.3 1 23 170 192 170 192 0.98 7 17 2.3e-05 0.00099 19.1 0.6 3 23 201 221 200 221 0.97 8 17 3.4e-05 0.0015 18.6 0.2 3 23 229 249 227 249 0.97 9 17 1.7e-07 7.5e-06 25.8 0.7 1 23 255 277 255 277 0.98 10 17 0.0099 0.43 10.8 1.0 1 15 283 297 283 297 0.95 11 17 0.0021 0.093 12.9 1.7 1 20 298 317 298 319 0.94 12 17 0.027 1.2 9.5 2.6 3 23 327 347 325 347 0.97 13 17 0.53 23 5.4 1.1 1 21 504 524 504 525 0.94 14 17 0.045 2 8.7 0.3 3 23 533 554 532 554 0.92 15 17 0.0082 0.36 11.1 1.5 3 23 560 580 559 580 0.97 16 17 0.0034 0.15 12.3 4.1 1 23 586 609 586 609 0.96 17 17 2.3e-05 0.00099 19.1 4.2 1 23 614 636 614 636 0.98
Sequence Information
- Coding Sequence
- ATGAAATTTCTTTTCAGGCTACCTAGTGGACATCTCATCATATTTTTGAAGACAACTCCAAAAAAACCAGTTGAAACATTTACTTGTAGTACATGTGCCCGTACTTATCCAACAGCATTCAAACTTCAAAAACATAAACGTCTCCATAAAGAACGTTTATATACATGTCCACATTGTCCAAAGACATGGCGTTTTCCTTTCGAACTTAAAAAACATATCCATACTGTTCATCAGCCTAGAAAAACTTGTATTTGTGATGTTTGTGGGAAATCTTTCAAAACACAACAAGGTTTAAATGATCATATGGAAGGTCATAGAGgtgtttataattataaatgtaatgAATGCGATGCAAAATTTAAACGACCCTATACATTACAAACTCATATTAAAGTTGAACATCAAGGTTTAAGATTTCCATGTAAACAATGTAAGAAAGTGTTTCGTACAGAACAAAGTTATAAATCTCATAGTAAAACACATGATCCAGATTATGTTAAAGAAACATATACATgtaaaatttgtgataaagtATTAACACATAAACGATCATTCTATTATCACATGAAAAATCATACAGGtcgtaatgataataatatgtgtGATATTTGTGGTTTACGTGTAACTACAAAAACTAGtttaaataatcatataaAAACACATTCAGATATAAAAGAGGTGATCTGTGATACATGTGGTAAGGCTTATAGAAATGAAAAGAGTTTATTGATTCATCGACGTATACATACGAAAGAAAAACCATTTGTCTGTTCCATATGTAGTAAAGCTTTCTCACAAAAAGGTACATTAAATGTTCATATGCGTTATCATACTGGAGAACGTCCATATAAATGTGACATCTGTTCAAAAGGCTTTTCAACATCCGATAATCACACTTGTAATATTTGCTCGGAAGTATTTCCAAATCGTGAAGAATTCGTTAAACATCATCTACATCAATATGGTGAAACATTCGGTTGTTGTAAATGTGGtagtaaatttaaaacaataacagaaCTATATACACACCTTGAAACGcacaaatcaaatataatcaTTGAAAATCTAGAAGGAAATGTGGATGAATCAAATGAGGAGTATGTTGAAGAGATTGTTctaaattatgataatgacgaagaaattatcgaaattgcTGATGATAGTTCAGAATTAGTATATATTTTAGATGATTCACAGTGTGTTAATGAAGTTGTTATTGAAGAGGACGGTGATACGGATTTATCAGACAAAGAACGACAACGATTAGATAATGTAACAATAGTTCAATTAGAACATGGCTATGTAATACCGGAAACAATTAATATAGTTAATGGTAAACAGAAAACTGTTGCCGCTAAAACAACAGAACCATCAACTAGTAATGTACAATATGTTCATCAACCACCAAAGATACGTTTACCACAAGCAAAACGTCGTCATGTTGTACCGGATTTTTCATCACCAAATTATGTTTATGTTAATGCTAATGATGAGATCGATATACCacattttaaatgtttacgTTGTGaacaattattcataaataaattcgtCTTTTTCCGACACATTGAAAAAGGCAAatgttatattaataattgcgATGTATGTAGTGccacatttaataaaaacagtgaattttattatcattatgttGTCGAACATACAGATCGAGCTATATGTAATTTTTGCTTTAGAACATTTATGTATGAGAAAAATGTTAAAGAACATATGTTAAGACATTTAGATCAATTCCGTCATCGTTGTGATGAATGTAATAAAGGCTTCTATACAGTACGTGAATATCGAAATCATTATAAGAATCGTCATATGGGTATACGGCATACATGTGAACATTGTAATCGAAGTTTTGCCgatgaatattattatagacGACATATTGCAACACATGAACAACAAACGAAAATCATTGTACAGTAG
- Protein Sequence
- MKFLFRLPSGHLIIFLKTTPKKPVETFTCSTCARTYPTAFKLQKHKRLHKERLYTCPHCPKTWRFPFELKKHIHTVHQPRKTCICDVCGKSFKTQQGLNDHMEGHRGVYNYKCNECDAKFKRPYTLQTHIKVEHQGLRFPCKQCKKVFRTEQSYKSHSKTHDPDYVKETYTCKICDKVLTHKRSFYYHMKNHTGRNDNNMCDICGLRVTTKTSLNNHIKTHSDIKEVICDTCGKAYRNEKSLLIHRRIHTKEKPFVCSICSKAFSQKGTLNVHMRYHTGERPYKCDICSKGFSTSDNHTCNICSEVFPNREEFVKHHLHQYGETFGCCKCGSKFKTITELYTHLETHKSNIIIENLEGNVDESNEEYVEEIVLNYDNDEEIIEIADDSSELVYILDDSQCVNEVVIEEDGDTDLSDKERQRLDNVTIVQLEHGYVIPETINIVNGKQKTVAAKTTEPSTSNVQYVHQPPKIRLPQAKRRHVVPDFSSPNYVYVNANDEIDIPHFKCLRCEQLFINKFVFFRHIEKGKCYINNCDVCSATFNKNSEFYYHYVVEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCDECNKGFYTVREYRNHYKNRHMGIRHTCEHCNRSFADEYYYRRHIATHEQQTKIIVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -