Ipal011162.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001958.1:7172-12069[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.8e-06 0.00012 22.0 0.5 2 23 146 167 145 167 0.96 2 15 1.3e-05 0.00055 19.9 4.6 1 20 173 192 173 195 0.96 3 15 2.9e-05 0.0013 18.8 4.2 1 23 201 223 201 223 0.98 4 15 7.7e-07 3.4e-05 23.7 2.4 1 23 229 251 229 251 0.98 5 15 0.00019 0.0081 16.3 5.7 1 23 257 280 257 280 0.97 6 15 0.0032 0.14 12.3 0.9 1 23 464 486 464 486 0.96 7 15 0.00056 0.024 14.7 0.9 1 23 492 514 492 514 0.96 8 15 0.00044 0.019 15.1 0.8 1 23 520 542 520 542 0.97 9 15 0.00037 0.016 15.3 6.5 1 23 548 570 548 570 0.98 10 15 0.0093 0.4 10.9 0.9 1 23 576 598 576 598 0.98 11 15 0.0019 0.083 13.1 4.5 1 23 604 626 604 626 0.98 12 15 6.3e-06 0.00027 20.9 0.6 1 23 632 654 632 654 0.98 13 15 1.5e-05 0.00066 19.7 0.4 1 23 660 682 660 682 0.98 14 15 1.4e-06 5.9e-05 23.0 0.2 1 23 688 710 688 710 0.98 15 15 3e-05 0.0013 18.8 0.8 1 23 716 739 716 739 0.97
Sequence Information
- Coding Sequence
- atggaattatgTAGATTGTGTTACACAGAAACAACTctagatttatcaaaaaatgcaTTTTCCGATGAATACGATAGTTTACAAATCGTCTATATTGTTGTAAAGTTAACAGGAGTTGaaataTTTGAAAGTGACCCATTTCCGAAAATAATCTGTTTAAATTGTTACAAgaaattgattagtttttataatttcaaaaaatctgtTGTTCAAGTTCATCATAAGTTTCGTAGAAGTTATCATGCTAACAGGACAGAATTTAAAGATGAAACTGAAACTAATGAATTTGAAAGTCAAACGAATGAAATTCAAGAAATCTCTGATGATAACAATGAGAAACATTCAATTGAAGATCTTTCCAGCAGTGGCGAtaacaatgatgataatgatataaaatcagatactgacaatgagaatgAAAATCACGAAAATCTAGTTTGTAAGATTTGCCAAAAGGTTTTTGCACGAAAAGATACTTTAATGGAACATTACCGTCTTCATAACAATGAAAGACcgtataaatgtaaaatttgtggtaaaaaatttGTTCATAAATCCAGTTTATGTGCCCATTTACCTTTCCATAGTCATGACaaaccatataaatgtaaaatttgtggtaaatgtttttatattaaacgaAGTCTAAATCTTCATCAACAATTACATACTGGTGAGAGACGATTTGTTTGTGATtattgtggtaaaaaattgacaacaaattcacatttacaacaacatcTCAAAATACATACTGGCGAGAAACCGTTTGTTTGTAAAACATGTAATTGTTCATTTACACATCGTGCaagtttaaaattacatattaatATGAAACATAACAATGGTGAACGACCATTTATGTgtgatatttgtgAAGCAGCTCCAAATCTatcaaaaaatgtatttctaaACCTAAAAGATGATTTAAAGGTCGTTGATATTGTTGCAAAATTAACAGGAATagaatTGTCTGAAAATGATCCATTTCCGAAAATAATCTGTACAAATTGttacgaaaaattgattagtttttatcaatttcgaGAATCAGTATTAGAAGTAAATtccaaatttcaacaaaatttctatGATCTTAAAGTAACAGAAATAAAAGTCGAAGAACATCGAGAAATTGaaaatattgaaacacaaaTGATCGCAAATAAAAGTCTTGATAATCaaacatttattacaattaatgaaaatctagaatttcttgatgaaaatgataaaaatccggatgatgaagatgaaataGATGCCGAAGATCCCcttaaaattgatgataatgaaaatgcGACAAATCAGGCGAAAGTagcggttgttgttgttgaagaatttCCACAAAACTCGACTGTACAACAACCAGAAACCGGTGAAAAACCGTACAAATGCAATTTGTGTGTTGCAAGTTTTTTCAATGAGAAGAATTTCCGTAATCATGTCGCTCTACATTTCGGtataaaaccatttaaatgtgattTGTGTCCGAAAAGTTTCCTCTATGAACAGAATTTACAGAAACATTTAACAGCACATACTGATAATCGATCGTTTCGTTGTGAATTTTGCGGCAaaacatttccaattattaGTAAATTACGTGAACATCGTGTCAAACATACCGGCGAAAGACCATTTGTTTGTAAAACCTGTAATTGTTCATTTGCCCATCATGCCAGTTTAAGTCGTCATTTACGTATACATcgtattgaaaaacaatataaatgtaatttgtgcgataaatattttctagaaCAAAGACTATTAGATAATCATTTAGaaacacatacaggtgaaaaacaatataaatgtaattattgtgaTAAGAGTTTCTTGCATATGACCGGTTTAAAGACACATCTAACAAAACATACCGGTAATCGACCgtttatttgtgatttttgtgGGAAAACATTTGCTGTACGACGTAATTTACGTGGACATTTACaaacacatactggtgagaaACCGTTCACGTGTGATATTTGTCAGGCAAGTTTTACATTTCGTCCGAGTTTAATACGACATATGCAAGAACATAATGGTGAACGTCCgtttgtttgtgttgtttgtgggaaaagttttccaattaaatcGACATTAAATCGACATGTACGGATCCATAGTGGTCAGAAACCGTTTGAATGTAAAATCTGTGATAAAGGTTTTACGAAAGAGTTATATTTGAAGAATCATCAGATTAAAGTACATCAGGGTGATGACACGACGGAAGGTGTTAGTGGCAATTTAACTActtaa
- Protein Sequence
- MELCRLCYTETTLDLSKNAFSDEYDSLQIVYIVVKLTGVEIFESDPFPKIICLNCYKKLISFYNFKKSVVQVHHKFRRSYHANRTEFKDETETNEFESQTNEIQEISDDNNEKHSIEDLSSSGDNNDDNDIKSDTDNENENHENLVCKICQKVFARKDTLMEHYRLHNNERPYKCKICGKKFVHKSSLCAHLPFHSHDKPYKCKICGKCFYIKRSLNLHQQLHTGERRFVCDYCGKKLTTNSHLQQHLKIHTGEKPFVCKTCNCSFTHRASLKLHINMKHNNGERPFMCDICEAAPNLSKNVFLNLKDDLKVVDIVAKLTGIELSENDPFPKIICTNCYEKLISFYQFRESVLEVNSKFQQNFYDLKVTEIKVEEHREIENIETQMIANKSLDNQTFITINENLEFLDENDKNPDDEDEIDAEDPLKIDDNENATNQAKVAVVVVEEFPQNSTVQQPETGEKPYKCNLCVASFFNEKNFRNHVALHFGIKPFKCDLCPKSFLYEQNLQKHLTAHTDNRSFRCEFCGKTFPIISKLREHRVKHTGERPFVCKTCNCSFAHHASLSRHLRIHRIEKQYKCNLCDKYFLEQRLLDNHLETHTGEKQYKCNYCDKSFLHMTGLKTHLTKHTGNRPFICDFCGKTFAVRRNLRGHLQTHTGEKPFTCDICQASFTFRPSLIRHMQEHNGERPFVCVVCGKSFPIKSTLNRHVRIHSGQKPFECKICDKGFTKELYLKNHQIKVHQGDDTTEGVSGNLTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -