Ipal009734.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001294.1:13747-14964[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5e-05 0.0022 18.0 1.3 3 23 10 30 8 30 0.93 2 14 6.3e-06 0.00027 20.9 1.3 1 23 36 58 36 58 0.96 3 14 0.00021 0.0093 16.1 2.4 1 22 64 85 64 88 0.90 4 14 3.3e-05 0.0014 18.6 3.6 1 23 94 116 94 116 0.98 5 14 7.4e-05 0.0032 17.5 8.6 1 23 122 144 122 145 0.96 6 14 3.2e-06 0.00014 21.8 0.8 1 23 150 172 150 172 0.98 7 14 6.1e-05 0.0027 17.8 0.2 1 23 178 201 178 201 0.94 8 14 2.9e-05 0.0013 18.8 2.4 1 22 206 227 206 230 0.91 9 14 2.4e-06 0.0001 22.2 3.5 1 23 236 258 236 258 0.95 10 14 2.1e-05 0.00092 19.2 4.5 1 23 264 286 264 286 0.99 11 14 1.2e-06 5.3e-05 23.1 1.0 1 23 292 314 292 314 0.98 12 14 0.00031 0.013 15.6 1.9 1 23 320 342 320 342 0.98 13 14 9.1e-09 4e-07 29.8 0.7 1 23 348 370 348 370 0.97 14 14 0.0005 0.022 14.9 1.5 1 23 376 399 376 399 0.95
Sequence Information
- Coding Sequence
- ATGCATACAGATGCATGTCCAATAGCATGCGAACAATGTGGAAAAAAATTCCGTACTCATGGACAATTACGTGTCCATTCCGTTAAACATACCGGTGAGAAACcgtatttatgtaaaatttgtaatacaaGTTTTCCATATCGTACAAGTTTAAATGTCCATTTACGTAAACATCGTGGTGTAAAACCGCATGAATGCCATCTGTGTGATAAACGTTTTTCagcattatatttattaaaaaaccatCTATTATCAGtaacacatactggtgaacgaCGATTTGAATGTCATTTATGTGATAAACGGTTTTCGGAAAagaaatttctcaataatcatttagtaacacatacaggtgaaaaacaatataaatgtcATCTGTGCAATAAAACGTATACACATCGTGTTGGTTTACAGACACATCTAAAAAGACATCATGGTAATCAAGCATTTACGTGTGGTTATTGTGGTAGAAAATTTATGGATAAACGGAATTTACAAGGACATATAAATTTGCATACAGGTGCTAAACCGTatagttgtaaaatttgtagTCAAGCTTTTGCGCAACGTAGAAGTTTAACGATACATTTAGGTGTACAACATCgtgaaaatctatataaatgtCATTTATGTGAAAAAAGTTTTCCATTACAATATCTTCTAAAAAAACATCTATCTTCAgtaacacatacaggtgaaagaAACTATAAATGTAATCTTTGTGATAAATGTTTTTCGCAAAAACGATTGTTAAAGAATCATTTAGTAgcacatacaggtgaaaaacgatataaatgtcatttatgtaataaaaaatatacacatcCTGTTGGTTTACGGATACATCTACAAAAACATAATGGCAATGAAGCATATATATGTGATTATTGTGggaaaaaatttacaataaaacgatcgttacaacaacatttaaatatacataccgGTGCTAAACCGTATGTTTGTCAGATATGTAATCAGGCATTTACATTTCgtattagtttatttatacatCATAAAGAACATAATGGTGATCGATCGTTTATTTGCGATGTTTGTGGAAAGATTTTTACACGGAAATCACAATTAAATcgacatttaaaaatacataccgGACAGAAACGGTTTCCGTGTAAACATTGTGATACCGGTTTTACGAAAGAATTGTATTTGAGGAATCATTTAGTGAGAGTGCATAATGCTGGCGATACGAAATGA
- Protein Sequence
- MHTDACPIACEQCGKKFRTHGQLRVHSVKHTGEKPYLCKICNTSFPYRTSLNVHLRKHRGVKPHECHLCDKRFSALYLLKNHLLSVTHTGERRFECHLCDKRFSEKKFLNNHLVTHTGEKQYKCHLCNKTYTHRVGLQTHLKRHHGNQAFTCGYCGRKFMDKRNLQGHINLHTGAKPYSCKICSQAFAQRRSLTIHLGVQHRENLYKCHLCEKSFPLQYLLKKHLSSVTHTGERNYKCNLCDKCFSQKRLLKNHLVAHTGEKRYKCHLCNKKYTHPVGLRIHLQKHNGNEAYICDYCGKKFTIKRSLQQHLNIHTGAKPYVCQICNQAFTFRISLFIHHKEHNGDRSFICDVCGKIFTRKSQLNRHLKIHTGQKRFPCKHCDTGFTKELYLRNHLVRVHNAGDTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -