Ipal003352.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000219.1:16471-21146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00029 0.013 15.6 3.8 2 23 136 157 135 157 0.96 2 20 0.21 9.1 6.6 4.7 2 23 162 185 161 185 0.86 3 20 0.0066 0.29 11.4 0.4 2 23 190 210 189 210 0.96 4 20 0.0003 0.013 15.6 1.0 1 23 216 238 216 238 0.98 5 20 2.6e-06 0.00011 22.1 3.7 1 23 244 266 244 266 0.99 6 20 3.5e-05 0.0015 18.5 6.1 1 23 272 294 272 294 0.98 7 20 0.0027 0.12 12.6 2.4 1 23 300 322 300 322 0.90 8 20 2.4e-05 0.0011 19.0 0.9 1 23 328 350 328 350 0.98 9 20 0.016 0.69 10.2 0.1 1 23 356 378 356 378 0.93 10 20 0.0065 0.28 11.4 0.1 5 23 388 406 387 406 0.93 11 20 0.00048 0.021 15.0 2.7 2 23 413 434 412 434 0.97 12 20 0.00027 0.012 15.8 2.9 1 23 439 461 439 461 0.98 13 20 0.00013 0.0058 16.7 1.2 1 23 467 489 467 489 0.97 14 20 0.00017 0.0074 16.4 3.8 1 23 650 673 650 673 0.97 15 20 0.043 1.9 8.8 0.0 5 23 682 701 681 701 0.91 16 20 1.8e-05 0.0008 19.4 0.5 1 23 708 730 708 730 0.97 17 20 0.017 0.74 10.1 0.5 5 23 740 758 739 758 0.94 18 20 6.1e-06 0.00026 20.9 1.6 1 23 764 787 764 787 0.97 19 20 0.00013 0.0056 16.7 0.9 1 23 794 816 794 816 0.97 20 20 1.4e-05 0.00059 19.8 3.2 1 23 822 844 822 844 0.98
Sequence Information
- Coding Sequence
- atggaattgtaTGAAATCGACGAAAATAACGTATTTCATTGTGAAACCGATAGGAATGATGATAAAACCcaaatcaatgataatgataatgatgatggtagttgGAATGATACCATTGGTAcaattggtGAGACGGAAAGTGGCCTtgtaattgataatgataatgatggaatCCAAATTAAGGACGAAGAtctggatgatgatgatgatgaaatcattgaaaatcaGGGATATTTTCAGGATGATGTGAAAATCGAAATCGTTGAACATCCCGtgaaaattgaaaacgATGAAATCTACGAAAATCCAGAATCGgtagatgataataaagaaaataacaataaacaagcTGATCCTGAAAAGgatgataagaaaaaagaaaaaaacttaaaaaacgAGGGCAAAGAATGTAAAATATGTGGTAAGTGTTTTGTACGTAAACGGTTTTTCGATAAACATTTACAAGCACATAAAGAACCACTAATATGTACCATTTGTGGTAAAGAATTTCCTTTAAACAGTAAAAGCCATTTTACTAGACAtgtaaaacaacataataataatgttgaatgtAAAACATGTGGAAAAACTGTTCGAGAAAGCTATTATACagtacatttaaaattacataataaagaTAAGCCTTTTGTCTGCGATATTTGTAATAAGAGATTTAAATTGACGCCATTTTTAGTAACacatttaaaaacacataatAGTGAACGACCgtttaaatgtaatatttgcgAGAAATCATTTACACTCAAACATGCTTtaacaaatcatttaaaaacacatGATCCAATAAAACGATTCACTTGTCATCtttgcaataaaacatttaaaagaaaatatcatTTACCGGCACATTTAATGACACATACTGGTgcaaaaccatttaaatgtgagatttgtgATAAATATTTCGCAAATCAGAAaagtttgaaatttcattcaacCAGTCATAATGACGACAAACCATTCATTTGTgagatttgtaataaaagatttccgttaaaacaaaaattagttaCACATTTGAGGACACATAGTGGTGAAAAACGGTTTATATGTGATGTTTGTAATAAAGGATTTGCAAATGGATTTCGTTTACGCCAACATGCAGTCGTTCATACTAAATTAAAACCATTCACTCGCGATATTTgtaaaacacaatttacattgaaaagtAATCTAATTAGACACATAGTTTTACATAATAAAGAGAAACCGGTCAAATGCAACGTTTGTAATAAACATTTCCCACatgaaaatgttttaaaacgccatcaaataattcataataaacaaGTATTCACGTGTAATATTTGCGATCGACAAATTGTCTCGAAACGGCATTTTAAACGACATTTAATGGTACATAGTGGTCAATTATCGTATGATTGtaagatttgtaataaaaagtTGGGATCGAGTAATTCGTTACGTTCACATATGAAATTACATCTAGACGagaaaccatttaaatATGGTTTACAATTACCGGATATTATTACTGAAGTAACAAAGTTACAAGTAACCGAAAGTGATACATTTCCCAAGATAATGTGCAATgattgttatgaaaaattaataaacttttataattttctggAAATGGTTGCACAAGCTAATTTGTACTTTCAACAAGACTTCAATAACAGTATTGATAAGGGGGGCTTTGATATAAACTGTGAAATCAAGAATGATTCTGTTGAAATTGAAGCAAAAGAAGTAAATGATACAACTGAtagtaatattgataaagatcAAGAATTTGccaatgaaattgaaataaagacCGAATATCTGGATGATGAAACTACTGATAATGCAATCAACGAAAATCAAGGATTTTTTCAGGATGATgtgaaaatggaaattgtagAACATCCAATGAAAACTGGTAAGAAAACAAGTTTTTCACTTAAAAGTGACGATAAACCGTTTCAATGTAACGTTTGTCAAAAgaagttttcattaaaatgtcTTTTAACACAACATATCAAAAATGTTCATGATGAAAAACGATTTCAATATAAGATTTGtgatcaaaaatttccatctgcatatgatttaaatgaacattcattaattattcatgatgataataaaaaactatttgTTTGTGATGTTTGTGATGAGAAATTTGCATCACATTCCAGTTTAACAGAACATTTAATGTTACATACTGATAGTATACCGAATAAAGGTGAGATTTGTATGAAAGATTTTACAAATCGAACAAATTTAAGAAATCATTCAAGGATTCATAGTGGTGAAAGACCGTTTGTATGCAAGTTATGTAACAAAACATTTACATTCAAAGGTGGTTTAAgacaacatttattaacacaacATAGTAcagttgaaaaatatttcatctGTCATATTTGTAATAACAAGTTTTCACTAGAAagtgatttaataaaacatttactagttcataatgaagaaaaacaatttacttGTCATATTTGTAATTACAGTTTTAAACGTGAAATCACTTTAAAAAATCAcgtaaaaattcataaataa
- Protein Sequence
- MELYEIDENNVFHCETDRNDDKTQINDNDNDDGSWNDTIGTIGETESGLVIDNDNDGIQIKDEDLDDDDDEIIENQGYFQDDVKIEIVEHPVKIENDEIYENPESVDDNKENNNKQADPEKDDKKKEKNLKNEGKECKICGKCFVRKRFFDKHLQAHKEPLICTICGKEFPLNSKSHFTRHVKQHNNNVECKTCGKTVRESYYTVHLKLHNKDKPFVCDICNKRFKLTPFLVTHLKTHNSERPFKCNICEKSFTLKHALTNHLKTHDPIKRFTCHLCNKTFKRKYHLPAHLMTHTGAKPFKCEICDKYFANQKSLKFHSTSHNDDKPFICEICNKRFPLKQKLVTHLRTHSGEKRFICDVCNKGFANGFRLRQHAVVHTKLKPFTRDICKTQFTLKSNLIRHIVLHNKEKPVKCNVCNKHFPHENVLKRHQIIHNKQVFTCNICDRQIVSKRHFKRHLMVHSGQLSYDCKICNKKLGSSNSLRSHMKLHLDEKPFKYGLQLPDIITEVTKLQVTESDTFPKIMCNDCYEKLINFYNFLEMVAQANLYFQQDFNNSIDKGGFDINCEIKNDSVEIEAKEVNDTTDSNIDKDQEFANEIEIKTEYLDDETTDNAINENQGFFQDDVKMEIVEHPMKTGKKTSFSLKSDDKPFQCNVCQKKFSLKCLLTQHIKNVHDEKRFQYKICDQKFPSAYDLNEHSLIIHDDNKKLFVCDVCDEKFASHSSLTEHLMLHTDSIPNKGEICMKDFTNRTNLRNHSRIHSGERPFVCKLCNKTFTFKGGLRQHLLTQHSTVEKYFICHICNNKFSLESDLIKHLLVHNEEKQFTCHICNYSFKREITLKNHVKIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -