Ipal005420.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- Zbtb41_1
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000431.1:60089-68706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.55 24 5.3 1.2 10 23 2 15 1 15 0.95 2 21 0.00074 0.032 14.4 0.5 1 23 21 43 21 43 0.98 3 21 4.8e-07 2.1e-05 24.4 1.5 1 23 49 71 49 71 0.95 4 21 0.00026 0.011 15.8 1.0 1 23 77 100 77 100 0.97 5 21 0.41 18 5.7 0.1 1 23 105 127 105 127 0.87 6 21 0.00023 0.01 15.9 1.5 3 23 134 154 132 154 0.96 7 21 6.4e-07 2.8e-05 24.0 0.1 1 23 160 182 160 182 0.99 8 21 0.27 12 6.3 0.3 10 23 441 454 439 454 0.92 9 21 5.3e-05 0.0023 18.0 2.4 1 23 460 482 460 482 0.97 10 21 0.022 0.94 9.7 0.7 1 14 488 501 488 502 0.90 11 21 0.00036 0.016 15.3 4.6 1 23 576 598 576 598 0.97 12 21 3.1e-05 0.0014 18.7 1.0 2 23 603 624 602 624 0.97 13 21 0.13 5.5 7.3 2.6 1 23 630 652 630 652 0.96 14 21 3.2e-06 0.00014 21.8 1.3 1 23 658 680 658 680 0.90 15 21 0.0011 0.047 13.8 0.5 1 23 686 709 686 709 0.97 16 21 6.1e-06 0.00027 20.9 0.9 1 23 714 736 714 736 0.98 17 21 0.0029 0.13 12.5 0.6 3 23 743 763 741 763 0.94 18 21 4e-06 0.00017 21.5 1.1 1 23 769 791 769 791 0.99 19 21 0.00027 0.012 15.8 1.4 1 23 797 820 797 820 0.96 20 21 2.6e-05 0.0011 18.9 0.5 1 22 826 847 826 850 0.90 21 21 0.00071 0.031 14.4 1.7 1 23 856 878 856 878 0.98
Sequence Information
- Coding Sequence
- CAATTTTCGGAAAACTATCATTTAAAAGTACATTTAAATACACATACCGGTGAAAGACCGTTTAAATGTAAGTTTTGTGATGGAAGTTTTAAAAGTGGAGCGAATTTACGTGGTCATTTATCAGTTCATAATAAAGatgaacaatttatttgtaatatttgtaataagagTTTTACAAATAAGAAGAATTTAAGGAATCATTTAGTATTGCATCGTGATAATCAACCGTTTGAATGTAATGTTTGTCaaaagaaatttccattaaaaggTCTTCTAAATCAACATTTCAAAAGGGTTCATGGtgagaaacaatttcaatgtaatattggtaatcaacaatttacatATGCACGTGAATTAAAAGAGCATCAATTAATTCATAGTGAAAAATCGTTGGCTTGTAATGTTTGTGATAAACGATTTTCAGCACGTTCTTGTTTACGTCTTCATTTAATGTTACATACTGGTAATCTgccatttaaatgtgaaatttgtgAGAAAGGTTTCGGAAGCCCATCACAATTACGTATCCATTTAAGAGTTCATACAGGTGCAAAACCTTATGAATCCGGTCAGAAATTACAAGACATTGTTACTGAAGTAACCAAATTGGAAACAGCCGAAAATGATCCTTTTCCCAACATAATTTGCGaaaattgttatgaaaaattaataaattcttataattttctaaaaatggtTGCACAAGCTGACTTAGCATTTCAACAAGACTTTCATGATAGGATTAATAAAGATTTGGACATTGGACTGAAAGAtgattttctcaaaattggtataaatgataatataagtgaagaaaatgatgataataacagtTCGACTACTGAAAATGACTCGGAAAtcgatgaaaatgatgatgaaactgAAAGaagtgatgataatgatagtagtTTGGGCGATAAAACTGATACTAATAGGAGTATCAAATTTCATGAAACGGAAACTGATAACGAGGATAATGATGAAATCGAAATAAAGAAAGAAGATACGGATGATGAGATGACTGATAgtgaaatcaatgaaaatgaGGGATATTTTCAGGATGATGTCAAAATCGAAATCGTTGAACATCCTGTGAAAACTGaaaacgaTGAAATCGACGAGAATCAAGAATCGgtcgatgatgataataaagaaaatcacAATCAACTTAATGATCTTGAAAAGGCAAAcgataatatagaaaaaataagaaGGAAACGGAGTAAAAACCgatataaatgtaaaacatGTGTGAAAAATCTTTTGCTTGTAATGTTTGTGATAAACGATTTTCGGCACGTTCTTGTTTACGTCTTTTTTGGAAAACCATCACATTTACGTATCCATTTAAGAGTTCATACTGGAGAAAAACCTCATGAATGTGAGATTTGCAATAAACGATTTCAAACAACAAGTGGATTACAAAACCATTTATCAAGACATAGAGGTGACAGACCGTTTATCTGtcatatttgtgataaaaaatttgcatCAAAAGagTATACAGCATGTGATCTTGTAACTGATAAcgaggatgatgatgaaatagaaataaagaacgaggattttgatgatgaaacGGATGTGAAAATAGAGATTGTCGAACATCCAGTAAAAATTGaaaatgatgaaaccGAAGAGTGCAACACTCAAACATCCCTAAATCCCAATCAGCAAACTGATcttgaaaaaagaaacaataataaagacgaaatcaattcatataaatgtaaaacatGTGGTAAGTGTTTTGCTTTGAAACGATCTTTGGATAGACATTCAAAATTACATGATAATCCAAttacatgtaatatttgtaataaacaattttcggAAAACTATCGTTTAAAAGTACATTTAAATACACATACCGGTGAAAGACCGTTTAAATGTAAGTTTTGTGATGGAAGTTTTAAAAGTGGAGCGAGTTTACGTTGTCATTTATCAGTTCATAATAAAGATGAACactttatttgtaatatttgtaataagagTTTTACAAATAAGAACAATTTAAGGAATCATTCAGTATTGCATCGTGATAATCAACCGTTTGAATGTAACGtttgtttaaagaaattcGCATTAAAAGGTCTTTTAAATGCACATTTCAAAAGAGTTCATGGTGAGAAACGgtttaaatgtaatatttgtgatgaAAAATTTAGATTAGCACGTGAATTAAAAAAGCATCAATTAATTCATAGTGAAAATTCGTTAGCTTGTAATGTTTGTGATAAACGATTCTCGGCACGTTCTTATTTACGATTTCATTTAATGTTACATACTGGTAATCTgccatttaaatgtgaaatttgtgAGAAAGGTTTTGGAAAACTATCACATTTACGTATCCATTTAAGAGTTCATACTGGAGAAAAACCTCATGAATGTGAGATTTGCAATAAGCGATTTCAAATAGCAAGTGGattacaaaaacatttatcaaGAAGACATAAAGATGATAAACCGTTTATCTGtcatatttgtgataaaagaTTTGCATTAAAAGGTGACTTAAGCAGACATATTATAAGCACAATTCATAAAACGGAGAAACCGTTTACTTGTAACATTTGTAATGAGAGTTTTACATATCGAGGTATTTATAAGAATCATCTGAAAagtcataataaataa
- Protein Sequence
- QFSENYHLKVHLNTHTGERPFKCKFCDGSFKSGANLRGHLSVHNKDEQFICNICNKSFTNKKNLRNHLVLHRDNQPFECNVCQKKFPLKGLLNQHFKRVHGEKQFQCNIGNQQFTYARELKEHQLIHSEKSLACNVCDKRFSARSCLRLHLMLHTGNLPFKCEICEKGFGSPSQLRIHLRVHTGAKPYESGQKLQDIVTEVTKLETAENDPFPNIICENCYEKLINSYNFLKMVAQADLAFQQDFHDRINKDLDIGLKDDFLKIGINDNISEENDDNNSSTTENDSEIDENDDETERSDDNDSSLGDKTDTNRSIKFHETETDNEDNDEIEIKKEDTDDEMTDSEINENEGYFQDDVKIEIVEHPVKTENDEIDENQESVDDDNKENHNQLNDLEKANDNIEKIRRKRSKNRYKCKTCVKNLLLVMFVINDFRHVLVYVFFGKPSHLRIHLRVHTGEKPHECEICNKRFQTTSGLQNHLSRHRGDRPFICHICDKKFASKEYTACDLVTDNEDDDEIEIKNEDFDDETDVKIEIVEHPVKIENDETEECNTQTSLNPNQQTDLEKRNNNKDEINSYKCKTCGKCFALKRSLDRHSKLHDNPITCNICNKQFSENYRLKVHLNTHTGERPFKCKFCDGSFKSGASLRCHLSVHNKDEHFICNICNKSFTNKNNLRNHSVLHRDNQPFECNVCLKKFALKGLLNAHFKRVHGEKRFKCNICDEKFRLARELKKHQLIHSENSLACNVCDKRFSARSYLRFHLMLHTGNLPFKCEICEKGFGKLSHLRIHLRVHTGEKPHECEICNKRFQIASGLQKHLSRRHKDDKPFICHICDKRFALKGDLSRHIISTIHKTEKPFTCNICNESFTYRGIYKNHLKSHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -