Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010000489.1:57808-61474[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00016 0.0068 16.5 1.9 1 23 100 122 100 122 0.98

2 16 0.00044 0.019 15.1 7.4 2 23 129 150 129 150 0.98

3 16 0.00031 0.014 15.5 4.0 1 23 160 182 160 182 0.97

4 16 0.00013 0.0057 16.7 1.2 1 23 242 264 242 264 0.98

5 16 2.2e-05 0.00095 19.2 6.3 2 23 271 292 271 292 0.98

6 16 0.00023 0.01 15.9 4.4 2 23 311 333 310 333 0.96

7 16 3.5e-05 0.0015 18.5 4.4 1 23 421 443 421 443 0.96

8 16 0.0003 0.013 15.6 1.1 1 23 449 472 449 472 0.93

9 16 1.9e-06 8.1e-05 22.5 0.8 1 23 477 499 477 499 0.98

10 16 3.4e-07 1.5e-05 24.9 1.5 2 23 510 531 509 531 0.96

11 16 7.9e-08 3.4e-06 26.9 1.5 1 23 538 560 538 560 0.97

12 16 2.8e-05 0.0012 18.9 1.6 3 23 572 592 570 592 0.92

13 16 0.00025 0.011 15.9 5.1 1 23 598 620 598 620 0.99

14 16 2e-05 0.00087 19.3 4.0 1 23 626 648 626 648 0.98

15 16 6.9e-08 3e-06 27.0 0.2 1 23 654 676 654 676 0.99

16 16 0.00022 0.0097 16.0 0.1 1 23 682 706 682 706 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00016	0.0068	16.5	1.9	1	23	100	122	100	122	0.98
2	16	0.00044	0.019	15.1	7.4	2	23	129	150	129	150	0.98
3	16	0.00031	0.014	15.5	4.0	1	23	160	182	160	182	0.97
4	16	0.00013	0.0057	16.7	1.2	1	23	242	264	242	264	0.98
5	16	2.2e-05	0.00095	19.2	6.3	2	23	271	292	271	292	0.98
6	16	0.00023	0.01	15.9	4.4	2	23	311	333	310	333	0.96
7	16	3.5e-05	0.0015	18.5	4.4	1	23	421	443	421	443	0.96
8	16	0.0003	0.013	15.6	1.1	1	23	449	472	449	472	0.93
9	16	1.9e-06	8.1e-05	22.5	0.8	1	23	477	499	477	499	0.98
10	16	3.4e-07	1.5e-05	24.9	1.5	2	23	510	531	509	531	0.96
11	16	7.9e-08	3.4e-06	26.9	1.5	1	23	538	560	538	560	0.97
12	16	2.8e-05	0.0012	18.9	1.6	3	23	572	592	570	592	0.92
13	16	0.00025	0.011	15.9	5.1	1	23	598	620	598	620	0.99
14	16	2e-05	0.00087	19.3	4.0	1	23	626	648	626	648	0.98
15	16	6.9e-08	3e-06	27.0	0.2	1	23	654	676	654	676	0.99
16	16	0.00022	0.0097	16.0	0.1	1	23	682	706	682	706	0.92

Sequence Information

Coding Sequence: ATGTTAATGGATTGTGCATCAATTCATGTATCGAATAATGATGGTTTACCAAAATTATTATGtggaaattgtgaaaataaattgaatttagcttatgaatttaaaaaacaatgcCAAAATAGTGATACAACATTAAGGGAATTGACAAATCAAACGGACGAATCAATACAAGGAATTAAAGAAGAAAGTCTTGATATTGTTGTACATCCAGACTTTAATATTCCCGGATTATTTCAGGAATCTGGTAGTGAAGATGATgatacaacaacagaaacaaaacCAAAAGCTACATCAACATTTCCTTGCACATTTTGTCAGAAAATTCTACGTACAAAGAAAGGTTTACGTATACATCAACGTCGTCATACTGGTGATAAATTACGTCAATGTCATATGTGTAATGCACAATTTACAAGAACACATCATTTAATACGTCATATGAAGATACATTATCGTAAAGCATCATCTGATACAGGACATGTATGTAGTGAATGTGGTCAATCATTTATGAAATTATCACATTTATTGTCACataaaaaaatgcataaaaCATCAATACAATCAGAGAataatgatcatgatgatggacaacaatcaacaacagtCGTTGATAATACAAATGATACTAATGAGATAGATGATAATAACGGTGATGATAAAGATAGTGATTTTGAAGAGTTTTTTAAGAACAAAtcaaaaccaaacaaaaaaggTAAAGGTATAtttgaatgtaaatattgtaataaaattatgacaACATATGTTggattaaaaatacatatgaGACGACATACTGGTAATGATTTAGctaaatgtaaattatgtgAGAAAACATTTACGAAAACCAGTCATTTAAAACGACATTTACAAACACATGGTATTAAAGAATTAATAGATGAAAAACCGAAAAcgaatgaaaagaaaattatggaATGTGAATTTTGTGATcgtaaattcaaatataaaaagagTTTCAATCATCATATGCAATCCGAACATGGTATGTCTGATGAAAGTGATGTACCTTTGAGTACATATGTTGCCAAACATAAcgataaagataataaaactgataaagaGCAACAAAATGAGAGTGGTGAACAAGAGATTGAAGGACAAGAATCCACATCAGTTtcaatgcaacaacaacaatctcaAGATGAACCATTAGATCAATCTGATCAAGAAACTAatgattcaaatattattaatccacaacaacaacaacaaacatcaAAGACTGGTGGTAATCATAAAGTACATTCATGTCATGTATGTGATGCATCATTTGTACGTGCAAATCATCTAACACGTCATATGACATTACATCGTGCTATATTAATACATAAATGTGATCGTTGTGATAAAGCTTATGCAACATTAGAACATTTAGCTAAACATGTTGAAGAAGATCATATTAATAAACCATATGCATGTACCATATGTAATAAACCATTTAGTAGAGGTGAACATTTAATACGACATTTAAAAGTACATCAAACTGGTAATGAGAAAGAtgataatttgaattgttcAATATGTGAGAAGACTTTCAGCAGaTCAGACCATTTGGCACGTCATATTAAAATACATCTATTACAAGATAAACGACACGTTTGTACGGAGTGTGGTAAAGCATTTAATCGTTTGGATAATTTGAAAACACATCAACGAATCCATACAGGCATTAAAGATACAACAAAGTTACATTTATGCATCTATTGCGGCAAAGAGTTTAATAATTCCAGTAATATGATTGTCCATATGAGACGACATACAGGCGAACGACCATATAAATGCAGTCAGTGTGGTAAAGGTTTTCCACGATCCCATGATCTTAAATGCCATGAACGTACACATTCTGGTGAGAAACCCTATCATTGTTCATTATGTGGAAAATCATTCAACAAAAGCAATAAATTGtTGAGACATACTCGAGTCCATACTGGTGAACGTCCTTATGTCTGTAATATTTGTGGTCGTGCATTTACTCAATCCAATGATTTAGCTTTACATATGCGTCGTCATACTGGTGCACGTCCATATGCATGTGGTATGTGCCCGGCTCGATTCATACAATCCGGTCAATTAAAAGCACACCGTCGTTCAACTGGTCATTGGATGGAGACTCAGCCGGATTTAAAAGGTGGTCATCGTGTTGAACCTGTTACACCAGTCATTGAACCAACACCAATACGTTTTAAAACACAtggtaaacaacaacaacaacagaagaaagatattgatgatgatggtaatggtggtggtggtgatgttgatgataatgatatgaaaaatatcaaattagtAAATCAAACGATGAATTTAATGACTGGTATTAATATACAAGGGCAACCGATTATGATGGATGCAACGAAATTGATGGAATTTCAAAATAGTGGATTTATTAGTTTAGTTAGTGCAGCAGCAGCTGGAAcaagtagtagtaataatagtgatttaaaatataagacaattcatgatgatgataatgatgatgataataatagtgaacAATTTAGTGTAACTGGACAAGTTATCAAAAGTGAAGATAATATTAAAGGAttggatgataataataagacaacaataacaacaacatcaacaactgCAGCAACGACAAGCAGTTTTTCAAGTGGTGAAACTGCAACAGTAACATACTCAATTGTTACACCAGCGATTGCATTTACAacaactaattataattatcagaATTATGGTTAA
Protein Sequence: MLMDCASIHVSNNDGLPKLLCGNCENKLNLAYEFKKQCQNSDTTLRELTNQTDESIQGIKEESLDIVVHPDFNIPGLFQESGSEDDDTTTETKPKATSTFPCTFCQKILRTKKGLRIHQRRHTGDKLRQCHMCNAQFTRTHHLIRHMKIHYRKASSDTGHVCSECGQSFMKLSHLLSHKKMHKTSIQSENNDHDDGQQSTTVVDNTNDTNEIDDNNGDDKDSDFEEFFKNKSKPNKKGKGIFECKYCNKIMTTYVGLKIHMRRHTGNDLAKCKLCEKTFTKTSHLKRHLQTHGIKELIDEKPKTNEKKIMECEFCDRKFKYKKSFNHHMQSEHGMSDESDVPLSTYVAKHNDKDNKTDKEQQNESGEQEIEGQESTSVSMQQQQSQDEPLDQSDQETNDSNIINPQQQQQTSKTGGNHKVHSCHVCDASFVRANHLTRHMTLHRAILIHKCDRCDKAYATLEHLAKHVEEDHINKPYACTICNKPFSRGEHLIRHLKVHQTGNEKDDNLNCSICEKTFSRSDHLARHIKIHLLQDKRHVCTECGKAFNRLDNLKTHQRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYHCSLCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPVIEPTPIRFKTHGKQQQQQKKDIDDDGNGGGGDVDDNDMKNIKLVNQTMNLMTGINIQGQPIMMDATKLMEFQNSGFISLVSAAAAGTSSSNNSDLKYKTIHDDDNDDDNNSEQFSVTGQVIKSEDNIKGLDDNNKTTITTTSTTAATTSSFSSGETATVTYSIVTPAIAFTTTNYNYQNYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -