Ipal006929.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000663.1:846-3005[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.1e-07 9e-06 25.5 2.8 1 23 229 251 229 251 0.98 2 16 2.6e-05 0.0011 18.9 0.3 1 23 257 279 257 279 0.99 3 16 4e-08 1.7e-06 27.8 0.5 1 23 285 307 285 307 0.98 4 16 1.8e-06 7.8e-05 22.6 0.3 1 23 313 335 313 335 0.99 5 16 4.7e-07 2e-05 24.4 0.7 1 23 341 363 341 363 0.99 6 16 3.8e-07 1.7e-05 24.7 1.2 1 23 369 391 369 391 0.99 7 16 7.9e-08 3.4e-06 26.9 0.9 1 23 397 419 397 419 0.99 8 16 0.029 1.3 9.3 0.1 1 23 425 447 425 447 0.98 9 16 1.3e-07 5.6e-06 26.2 1.8 1 23 453 475 453 475 0.99 10 16 1.1e-05 0.00046 20.2 1.3 1 23 481 503 481 503 0.99 11 16 1.5e-05 0.00065 19.7 0.9 1 23 509 531 509 531 0.99 12 16 1.2e-06 5.3e-05 23.1 0.5 1 23 537 559 537 559 0.99 13 16 4.8e-05 0.0021 18.1 0.8 1 23 565 587 565 587 0.99 14 16 1.9e-07 8.3e-06 25.6 2.7 1 23 593 615 593 615 0.98 15 16 6.3e-07 2.7e-05 24.0 0.5 1 23 621 643 621 643 0.98 16 16 6.5e-06 0.00028 20.8 4.3 1 23 649 671 649 671 0.99
Sequence Information
- Coding Sequence
- ATGTGTAGATTATGCCATGAATATGAATACGACAGTTGTATTACAGATATGTTTATCATGAAAAAATGTGGTCGATTAGTATCTGATTTGGTTAGAGAACTAATCggattaaaaTTGTCTAAAGATGACCCGTTTCCTCGAATAGTTTGTTTAGggtgttatcaaaaattatacgaaTTTGCTCTCTTTAAAGAATACATTATTGCAACTGAACCAAAGTGTCGTCAAGAGAAATATGATGGACTTGTATGTCGACTATGTAATTACAAACGTCCAGCGTCAAAATTGTATGAAAATgcatttttacataaaatatccGATCGACAAGTATCTGATGTCGTTACAGAATTATTTGGATTACAAttatcTGAAGATGATCCATTTTCGAAACTGGTCTGCTTTGAATGTTGTGAGAAATTGCAGGAGaattatgattttaaaaaactgaTTTATCAGTCAGATTTACAATTTCGTGAAGACtatcataataaaaacaaaaacacagaCAACGGTGATAAGCAGATAGAAAAGCCTGTAATTGAAAGTGATGAAAATGATAGCGAAGATGATGATGGCAATCATGAATTGAGTGATAATGATTCAAGTAAATCTACCAATGATGACAATGATGAACTAAGATACAACCTACAGAGACATTCAAGAAAACGTACGGAAACCAAATCGCATAAATGTACTATATGTGATAAAAATTACACCACTAAAGCAAATCTAAATATTCATCTGAGAACACATACAGGTGAGAAGCCGTATGAATGTACCGTTTGTGATAAAAGTTTCGGGactaaaacaattttgattaacCATTTGAGAGTACATACAAATGAAAGTCCATATATGTGTGATATTTgtgatagaaattttaaacaaaaagcaAATCTAATCGTCCACATGAGATCACATTCACGTGAAAAACCGTATCAATGTACCGTTTGTGGTAAAAGTTTCAGTAGTAAAGTAATTTTGATTAACCATTTAAGAGTACATACAAATGAAAGACCATATAAGTGTGATATTTgtgatggaaattttaaacagaaaGCAAATCTATTCGTCCACATGAGATCACATACACGTGAAAAACCTTATCAATGTACTGTTTGTGATAAACGTTTTACATCGAAACAAAGTCTAGCCGGCCATTTAAgaacacatacaggtgaaaaaccgtacCAATGCCCTAGATGTGATAAGAGTTTCAGTTCGAAAGCTAATCTAACCCTCCATGTACAAAGACATAAAGGGGAGAAACCGTATGAATGTGGTGTTTGTGGCAAAGGTTCCCTCATAAAAGGAAGTTTTAGAGAACATTTGCGAACACATACAGATGAAAGATCGTACGAATGTGCTACTTGTGGTAAAACTTTTAGTCACAGAACAAACCTAGTCGTTCATTTGAGAACACATAGAAGTGAGAAACCATACCAATGTGATACTTGTGGTAGAGGTTTCCATTACAAAGCAGCTTTAACCCTTCATGTGAGAACACATACAAATGAACGACCATATAAATGTGATACTTGTGGTAAAGGATTCAAAGCAAAGGGACGTTTAACTACTCACTTGAGACTACATACAACTGATAGGCCGTATAAATGTGATACTTGTGGtgaaaaatttgatcaaaaaccaaatttaGTCATCCATTTGAGAAAACATACAGGTGAAGAGCCCTACAAATGTACTCTTTGTAGTAAAGGTTTCCGTAAGAAGGAAGTTCTAATCCTTCATTTAAGAATTCATACGGGTGAAAAACCGTACGAATGTACTACTTGTAATAAAAAGTTTACTAGAAAATCAAGCTTACGGGTCCATTTGAAAATACATTCAGGACAAAAGCCGTATGAATGTGCTGATTGTGGGAAAAActttagatttaaaaataatttaatcgtCCATTTGAGATTACATACAGATGAAAAACCATTCAAATGTTCCACTTGTGATAAGggtttcaatcaaaaaatgcATTTGAATCTTCATTTGAAAACACATCAAGATAAGAAATCAGGTTAA
- Protein Sequence
- MCRLCHEYEYDSCITDMFIMKKCGRLVSDLVRELIGLKLSKDDPFPRIVCLGCYQKLYEFALFKEYIIATEPKCRQEKYDGLVCRLCNYKRPASKLYENAFLHKISDRQVSDVVTELFGLQLSEDDPFSKLVCFECCEKLQENYDFKKLIYQSDLQFREDYHNKNKNTDNGDKQIEKPVIESDENDSEDDDGNHELSDNDSSKSTNDDNDELRYNLQRHSRKRTETKSHKCTICDKNYTTKANLNIHLRTHTGEKPYECTVCDKSFGTKTILINHLRVHTNESPYMCDICDRNFKQKANLIVHMRSHSREKPYQCTVCGKSFSSKVILINHLRVHTNERPYKCDICDGNFKQKANLFVHMRSHTREKPYQCTVCDKRFTSKQSLAGHLRTHTGEKPYQCPRCDKSFSSKANLTLHVQRHKGEKPYECGVCGKGSLIKGSFREHLRTHTDERSYECATCGKTFSHRTNLVVHLRTHRSEKPYQCDTCGRGFHYKAALTLHVRTHTNERPYKCDTCGKGFKAKGRLTTHLRLHTTDRPYKCDTCGEKFDQKPNLVIHLRKHTGEEPYKCTLCSKGFRKKEVLILHLRIHTGEKPYECTTCNKKFTRKSSLRVHLKIHSGQKPYECADCGKNFRFKNNLIVHLRLHTDEKPFKCSTCDKGFNQKMHLNLHLKTHQDKKSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -