Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010001058.1:1-9800[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.028 1.2 9.4 3.4 1 23 8 30 8 30 0.98

2 24 0.00028 0.012 15.7 3.8 1 23 36 58 36 58 0.98

3 24 0.00037 0.016 15.3 7.6 1 23 64 86 64 86 0.98

4 24 1.4e-06 6.3e-05 22.9 0.7 1 23 92 114 92 114 0.97

5 24 0.00026 0.011 15.8 3.6 1 22 120 141 120 141 0.96

6 24 6.5e-07 2.8e-05 24.0 1.5 1 23 148 170 148 170 0.98

7 24 2.5e-05 0.0011 19.0 3.5 1 23 176 198 176 198 0.98

8 24 1.8e-05 0.00076 19.5 1.4 1 23 204 226 204 226 0.97

9 24 0.56 24 5.3 0.7 5 23 301 319 300 319 0.95

10 24 1.5e-05 0.00066 19.7 4.2 1 23 325 347 325 347 0.97

11 24 0.00035 0.015 15.4 2.8 3 23 353 373 351 373 0.93

12 24 1.9e-05 0.00082 19.4 0.8 1 23 379 401 379 401 0.98

13 24 0.0003 0.013 15.6 0.1 1 23 411 433 411 433 0.97

14 24 1.3e-06 5.7e-05 23.0 0.6 1 23 443 465 443 465 0.98

15 24 7.9e-05 0.0034 17.4 0.3 1 23 475 498 475 498 0.98

16 24 1.1e-05 0.0005 20.1 0.8 1 23 525 548 525 548 0.98

17 24 0.00024 0.01 15.9 3.7 1 22 554 575 554 578 0.91

18 24 5.1e-07 2.2e-05 24.3 3.7 1 23 584 606 584 606 0.98

19 24 1.5e-05 0.00067 19.7 4.0 1 23 612 634 612 634 0.99

20 24 8.6e-06 0.00037 20.5 2.9 1 22 640 661 640 664 0.91

21 24 1.1 49 4.4 0.2 7 23 676 692 670 692 0.88

22 24 0.00022 0.0096 16.0 0.7 1 23 713 735 713 735 0.98

23 24 4e-06 0.00017 21.5 2.9 1 23 741 763 741 763 0.97

24 24 2.7e-05 0.0012 18.9 0.1 1 23 769 792 769 792 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.028	1.2	9.4	3.4	1	23	8	30	8	30	0.98
2	24	0.00028	0.012	15.7	3.8	1	23	36	58	36	58	0.98
3	24	0.00037	0.016	15.3	7.6	1	23	64	86	64	86	0.98
4	24	1.4e-06	6.3e-05	22.9	0.7	1	23	92	114	92	114	0.97
5	24	0.00026	0.011	15.8	3.6	1	22	120	141	120	141	0.96
6	24	6.5e-07	2.8e-05	24.0	1.5	1	23	148	170	148	170	0.98
7	24	2.5e-05	0.0011	19.0	3.5	1	23	176	198	176	198	0.98
8	24	1.8e-05	0.00076	19.5	1.4	1	23	204	226	204	226	0.97
9	24	0.56	24	5.3	0.7	5	23	301	319	300	319	0.95
10	24	1.5e-05	0.00066	19.7	4.2	1	23	325	347	325	347	0.97
11	24	0.00035	0.015	15.4	2.8	3	23	353	373	351	373	0.93
12	24	1.9e-05	0.00082	19.4	0.8	1	23	379	401	379	401	0.98
13	24	0.0003	0.013	15.6	0.1	1	23	411	433	411	433	0.97
14	24	1.3e-06	5.7e-05	23.0	0.6	1	23	443	465	443	465	0.98
15	24	7.9e-05	0.0034	17.4	0.3	1	23	475	498	475	498	0.98
16	24	1.1e-05	0.0005	20.1	0.8	1	23	525	548	525	548	0.98
17	24	0.00024	0.01	15.9	3.7	1	22	554	575	554	578	0.91
18	24	5.1e-07	2.2e-05	24.3	3.7	1	23	584	606	584	606	0.98
19	24	1.5e-05	0.00067	19.7	4.0	1	23	612	634	612	634	0.99
20	24	8.6e-06	0.00037	20.5	2.9	1	22	640	661	640	664	0.91
21	24	1.1	49	4.4	0.2	7	23	676	692	670	692	0.88
22	24	0.00022	0.0096	16.0	0.7	1	23	713	735	713	735	0.98
23	24	4e-06	0.00017	21.5	2.9	1	23	741	763	741	763	0.97
24	24	2.7e-05	0.0012	18.9	0.1	1	23	769	792	769	792	0.96

Sequence Information

Coding Sequence: acacatacaggtgaaagaCCATATAAATGCCATCTATGTGAGAAGAATTATTGGAGAAAGTATCGTCTAAATGATCATCTAGTAACACACACAGGTAAAAAACCATATATATGTCACATTTGTGGTAGAGGCTGTTCACATAAGGCGACTCTAGAGTATCATTTAGTAACACATACAGGTAAAAAACCACATAAGTGTCATCTTTGTGATAAAGGCTTTACACAAAaacaatgtttaaataatcatttagtAACACATACAGGCGAAAAGCCATATAAATGTGATTTATGTGATAAAGGTTATTCAAATAAGACAAATCTAAATAAGCATTTAGTAATACATACAGTTGAAAAACAATATGAATGTCATATTTGTGATAAGAAGTTCATACAGAGGACACGGTTATGCTCGCATTTGCAAACACAAAATGCTGTTGAAGGGTATGTTTGTGATTACTGTGGTAAAAAATTTACACTAAAACGATccttaaataaacatttaaatatacataccgGTGAGAAACCGTTTGTCTGTAAAATATGTAATCAGGCTTTTTCACATCGCATAAGTTTATTTAACCATCAAAAGAAACATACTAGTAAACGATCGTTTATTTGTCATATTTGTGGTGAGAAGTTTATGATGAAATCGAAATTAAATCGACATTTAGAAGTTCATAAAACTGTTGatatCATTGAAACACCACTGACTGAAAATAAAAGTGTTAATAAACAGACATTTGTTGCGGTTGATGAAAATCTAGAGTTTCcccataattataataatgatgatgatgttaaaaATCACATAGAAACAGAGGATCCTCtcaaaattgataaaaacgaaaaagaaatcaGTGAAGATAATAAGAAATCTCTACAagaatcatataaatataataagtgTGATGAAAGTTATCTACATAAAGAACAATTagaatatcatttaaaattacataatcgtGAAACATCACATAAATGTAATGTGTGTAATAGACGTTTTTCacgtaaattaaatttaagtaGGCATTTAAAAGCGCATCTCAATGAATCTATTTGTGAACattgtggtaaaaaatttcaatataaatcacaATTACGTCTACATTCCGTTAAACATACCGGCGAAAAACCATTcgtttgtaaaatttgtaatgcATGTTTTTCATTTCCTGCAAGTTTAACAACACATGTACGTGCACATTCTATTAAATGTACTGGTGAAACACCGTTTAtctgtaaaatttgtaatgcAAGATTTCCATATCCTGCAAGTTTATATCTACATTTACGTGCACATTCTGTTAAACATGCTGGTGAAAAATTGTTcgtatgtaaaatttgtaatagaaGTTTTTCATATCGTGCCACTTTAAATGTACACTTACGTGCACATTCCGTTAAACAAGGTAATGAAAAACCATTCGTATGTAGAATATGTAATGCAGGTTTTCCATATAGTTCAAGTTTATATGTACATTTACGTACAAAACATCGTGAAAAAACATATCTTTGTGATACAGAAAAGGGAACTCTAGATAATCATTTAGTAACACATACTGGTGCAAAACCATTcgtatgtaaaatttgtaatgcAAGTTTTTCGTACCGTATAAAGTTAAATGTACATTTACGTACACAACATCGTGaagaaaaaccatttaaatgtcaTCTGtgtgataaacaattttcaggaAAGTATACGTTAAAGtatcatttattatcagtaaaacATACAGGTGAACGACGATTTGAATGTCATCTTTGTGATAAacgtttttcacaaaaatataatctaACTAATCATTTAGTAACACATAccggtgaaaaaccatataaatgtcaTCTGTGTGATAGACGTTTTACAGAAAAGAATTATcttaataatcatttaataacaCATACCGCCGAAAAACCATTCAAATGTCATCTTTGTGATAAACAATTTGCAAGAAAGTATCAGTTAAagattcatttattatcagtaaaacATACAGATGAACAACAGTTCGAATGTCATCTTTCTGATCAAAGTTTTGGAGACAAGGGGACtctaaatgatcatttagTAACACATACAGGTGGTGAAAAATTTGCAGTAAAACGATCCTTAAATGGTCATACCGATGAAAAACCGtatgtttgtaaaatttgtaatcaGGCTTTTCCATATCGCATGAGTTTATTTGAACATGAAAAGAAGCATACTAGTGAGAAATTGTTCAGTTGTCATGTTTGTGATGAAAAGTTTATCACGAAATCACAATTAAATCGACATTCAAAAGTCCATAAAACTAAGAAAACATTTCCGTGTccaatttgtaataaagttgTAACAAGAGAGcggtatttaaaaattcatatagCAAAAATGCATAATAATGGTGACACGAAATGa
Protein Sequence: THTGERPYKCHLCEKNYWRKYRLNDHLVTHTGKKPYICHICGRGCSHKATLEYHLVTHTGKKPHKCHLCDKGFTQKQCLNNHLVTHTGEKPYKCDLCDKGYSNKTNLNKHLVIHTVEKQYECHICDKKFIQRTRLCSHLQTQNAVEGYVCDYCGKKFTLKRSLNKHLNIHTGEKPFVCKICNQAFSHRISLFNHQKKHTSKRSFICHICGEKFMMKSKLNRHLEVHKTVDIIETPLTENKSVNKQTFVAVDENLEFPHNYNNDDDVKNHIETEDPLKIDKNEKEISEDNKKSLQESYKYNKCDESYLHKEQLEYHLKLHNRETSHKCNVCNRRFSRKLNLSRHLKAHLNESICEHCGKKFQYKSQLRLHSVKHTGEKPFVCKICNACFSFPASLTTHVRAHSIKCTGETPFICKICNARFPYPASLYLHLRAHSVKHAGEKLFVCKICNRSFSYRATLNVHLRAHSVKQGNEKPFVCRICNAGFPYSSSLYVHLRTKHREKTYLCDTEKGTLDNHLVTHTGAKPFVCKICNASFSYRIKLNVHLRTQHREEKPFKCHLCDKQFSGKYTLKYHLLSVKHTGERRFECHLCDKRFSQKYNLTNHLVTHTGEKPYKCHLCDRRFTEKNYLNNHLITHTAEKPFKCHLCDKQFARKYQLKIHLLSVKHTDEQQFECHLSDQSFGDKGTLNDHLVTHTGGEKFAVKRSLNGHTDEKPYVCKICNQAFPYRMSLFEHEKKHTSEKLFSCHVCDEKFITKSQLNRHSKVHKTKKTFPCPICNKVVTRERYLKIHIAKMHNNGDTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -