Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010000280.1:72238-80556[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.00063 0.027 14.6 1.5 1 23 2 24 2 24 0.98

2 27 0.0018 0.077 13.2 2.4 1 23 30 53 30 53 0.94

3 27 2.1e-05 0.00091 19.2 2.4 3 23 59 79 58 79 0.99

4 27 7.6e-05 0.0033 17.5 4.8 1 23 89 112 89 112 0.97

5 27 0.049 2.1 8.6 0.1 1 23 119 141 119 141 0.93

6 27 1.7e-07 7.5e-06 25.8 1.8 2 23 148 169 148 169 0.98

7 27 0.035 1.5 9.1 1.3 1 23 187 209 187 209 0.97

8 27 7.8e-08 3.4e-06 26.9 0.9 2 23 216 237 216 237 0.98

9 27 0.0063 0.27 11.4 0.1 2 23 259 279 258 279 0.95

10 27 0.00037 0.016 15.3 3.2 1 20 285 304 285 306 0.94

11 27 6e-06 0.00026 20.9 3.9 1 23 313 335 313 335 0.99

12 27 0.0028 0.12 12.5 0.5 2 23 342 364 341 364 0.96

13 27 0.0012 0.05 13.7 5.6 1 23 372 394 372 394 0.96

14 27 0.0018 0.076 13.2 2.9 1 23 404 427 404 427 0.98

15 27 0.00033 0.014 15.5 0.6 1 23 434 456 434 456 0.98

16 27 6.7e-07 2.9e-05 23.9 0.8 2 23 463 484 463 484 0.98

17 27 4.7e-05 0.002 18.1 5.2 1 23 490 512 490 512 0.98

18 27 0.00043 0.019 15.1 1.7 2 23 536 557 535 557 0.96

19 27 0.00011 0.0047 17.0 1.9 1 23 563 585 563 585 0.98

20 27 0.03 1.3 9.3 1.4 1 23 594 616 594 616 0.97

21 27 3.6e-05 0.0016 18.5 0.1 1 23 622 645 622 645 0.94

22 27 9.2e-07 4e-05 23.5 1.6 1 23 649 671 649 671 0.96

23 27 0.091 4 7.8 5.4 1 23 680 703 680 703 0.98

24 27 0.0014 0.06 13.5 0.2 1 23 710 732 710 732 0.96

25 27 2.9e-05 0.0013 18.8 3.8 1 23 738 760 738 760 0.98

26 27 4.6e-06 0.0002 21.3 1.9 1 23 766 788 766 788 0.99

27 27 0.00035 0.015 15.4 0.5 1 23 794 817 794 817 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.00063	0.027	14.6	1.5	1	23	2	24	2	24	0.98
2	27	0.0018	0.077	13.2	2.4	1	23	30	53	30	53	0.94
3	27	2.1e-05	0.00091	19.2	2.4	3	23	59	79	58	79	0.99
4	27	7.6e-05	0.0033	17.5	4.8	1	23	89	112	89	112	0.97
5	27	0.049	2.1	8.6	0.1	1	23	119	141	119	141	0.93
6	27	1.7e-07	7.5e-06	25.8	1.8	2	23	148	169	148	169	0.98
7	27	0.035	1.5	9.1	1.3	1	23	187	209	187	209	0.97
8	27	7.8e-08	3.4e-06	26.9	0.9	2	23	216	237	216	237	0.98
9	27	0.0063	0.27	11.4	0.1	2	23	259	279	258	279	0.95
10	27	0.00037	0.016	15.3	3.2	1	20	285	304	285	306	0.94
11	27	6e-06	0.00026	20.9	3.9	1	23	313	335	313	335	0.99
12	27	0.0028	0.12	12.5	0.5	2	23	342	364	341	364	0.96
13	27	0.0012	0.05	13.7	5.6	1	23	372	394	372	394	0.96
14	27	0.0018	0.076	13.2	2.9	1	23	404	427	404	427	0.98
15	27	0.00033	0.014	15.5	0.6	1	23	434	456	434	456	0.98
16	27	6.7e-07	2.9e-05	23.9	0.8	2	23	463	484	463	484	0.98
17	27	4.7e-05	0.002	18.1	5.2	1	23	490	512	490	512	0.98
18	27	0.00043	0.019	15.1	1.7	2	23	536	557	535	557	0.96
19	27	0.00011	0.0047	17.0	1.9	1	23	563	585	563	585	0.98
20	27	0.03	1.3	9.3	1.4	1	23	594	616	594	616	0.97
21	27	3.6e-05	0.0016	18.5	0.1	1	23	622	645	622	645	0.94
22	27	9.2e-07	4e-05	23.5	1.6	1	23	649	671	649	671	0.96
23	27	0.091	4	7.8	5.4	1	23	680	703	680	703	0.98
24	27	0.0014	0.06	13.5	0.2	1	23	710	732	710	732	0.96
25	27	2.9e-05	0.0013	18.8	3.8	1	23	738	760	738	760	0.98
26	27	4.6e-06	0.0002	21.3	1.9	1	23	766	788	766	788	0.99
27	27	0.00035	0.015	15.4	0.5	1	23	794	817	794	817	0.97

Sequence Information

Coding Sequence: ATGTTTGAATGTGATATATGTCAGAAAAAGATCAAATTCTATGGTAATTTAATGCTTCATCGTCGCCGTCATCTAAAAGATTATATGTACAGTTGTGAGGTTTGTGGACAAGGCTTTATACAACATTGTGAATATAAGAGTCATATGGAAGGCAAACATAGTAAATCAAATCTATGCAATATATGCGGTAGatcgttttataataaacacgGATTAGATTCACATATGAAACGACATGATGAAGATTACACTGGAAAacgtaattttaaatgtgaCTATTGTACGAAAACATTTATGCAATTGATGCATTTAAAGAAACATGTTAATCGAATGCATAACGATAATCGTCGTAAATTTGTTTGTGATTTATGTGGACAAGAACTAGCTAGTCGTGGTGGTCTACGTTATCATAAATATGCACACGAGGGTGTTAAAGAAAATGAATGTAAATTGTGTGGTAAACGATTCAATAGGAAAAGTACATTGGTTGAACATATGCGAACACATTCCGGTGAAAAACCTTatcattATCGCATGCATAGCGACACTCGTCGTAAATTCACTTGTGATTGTTGCGGTAAAGAATTAGCCAGTAATTATGGCTTAAAACTACACAAACAGATCCATAACAAGACGAAAACGGAAGAATGTAAGATATGCGGTCGAACATTTATTCGTAAAGATACATTAGTACAACATATGCGTACACATTCCGGAGAGAGACCGTACAGTTGTGAAATTTGTGTGATAAAGTCGACAGTCAAGAAACCTGTACCATGTccatattgtttaaaaatcgtTAATCAATCACAATTGAAACGTCATTTGGTTGTTCATACGGATCATCGACCATATTCATGTGAATTATGTGGCAAAACGTTTAAACGAAAACACTCAGTGAATGAGCATAAATGTGCCTATGATACAACTCTAAAATatgaatgtaatatttgtcatAAAAAACTGagcaattattataatttagagAATCATCAGCGACGTCATTTGAAAGATTATAAAGTTACTTGTGAAATTTGTGGATTTGGTTGTATGTCAAATGCTGAATTAAGGCAACATATCGAGAAGAAACATAATAAATCGGATGAAATATGTTatttgtgtaatatttgtggtaaatcgTGCAGTAGTAAATCATCATTGGATTGTCATATGAAAAGACATGAAGAAAACTATACAGAAAAacgtaattttaaatgtgaattttgtaagaaaacaTTCCTACAAATGGTATATTTAAGAACACATATTCGTCGGATGCATAATGATAATCGTCGTCGATTCACTTGTGATTTGTGTGGTAAAGAATTAGCAAGTCGTTATAGTTTTCAATTGCATAGAAATGTCCATGATGGTATCAAATTGAATGAATGTAAATTATGCGGTAGAAAATTCAATCGTAAAAGTGCTCTAGTAGAGCATATACGAACACATTCCGGTGAGAAACCGTAtacttgtaaattttgtaataaatcgtTTACACAAAGAACTCCATTGAAAATCCATTTAAGACATCATACTGGAGAGAGACCGTATTCGTGTGAGATCTGTGAAGAAAAGACTAAATACATGGGCAAGAAGATGTTACAATGCCCTTTTTGCCCAAAAACCTATAGTTAtgaatgtttattgaaaaaacattGGACTGTTCATACTGATCATCGTCTATATTCATGTAAACTTTGTCAGAAAACGTTCAAAAGTGAACTGGCATTGAAGAAACACTCAATTActcataataatgatgatgataattttaaacataaatgcACCATGTGTGAGGCAAAATTTAAATCTGATTCTGGTATAAAACTTCATCTTGCACGTCATTTACAAAACTATAAATTCACTTGTGAAATATGTGACAAACGTTTCGTATCAGCTGATGGCTATAAGATCCACATAGAAGGCAAAcataataaatcgtttttatGCAATGTTTGCGGTAAATCATTTAGTGGGAAAACTGCATTGAAACATCATATGATAACACATGAAGAAAACTATACGAAACGTCAATTTAAATGTGAATTCTGTATGAAAACTTTTATGCAAGATCTACATTTAAGGAGACATACTAAAAGAATGCATAATGATAATCGTcctaaatttatttgtgatcTGTGTGGTAAAGAAGTAAACAGTTCTGTTAGTTTACGATTACATAAAAATCTTCATGATGGTATAAAACCTCatgaatgtaaattttgtgGTAAAACATTCGTTCTAAGACATACATTGGTGATACATATTCggacacatactggtgaacaACCTTATAAATGTAGCTTTTGTAATAAGACCTTTTCACAAGGGTCTGGATTGAAAATTCATCTAAGACAACATCCCGGCGAAAGGCCATATTCTTGTGATATTTGTCAAGAGAAATTTATCAGTAAAAGTATACTGAATGCTCATTTAAAAAGCAAACATCGTTAA
Protein Sequence: MFECDICQKKIKFYGNLMLHRRRHLKDYMYSCEVCGQGFIQHCEYKSHMEGKHSKSNLCNICGRSFYNKHGLDSHMKRHDEDYTGKRNFKCDYCTKTFMQLMHLKKHVNRMHNDNRRKFVCDLCGQELASRGGLRYHKYAHEGVKENECKLCGKRFNRKSTLVEHMRTHSGEKPYHYRMHSDTRRKFTCDCCGKELASNYGLKLHKQIHNKTKTEECKICGRTFIRKDTLVQHMRTHSGERPYSCEICVIKSTVKKPVPCPYCLKIVNQSQLKRHLVVHTDHRPYSCELCGKTFKRKHSVNEHKCAYDTTLKYECNICHKKLSNYYNLENHQRRHLKDYKVTCEICGFGCMSNAELRQHIEKKHNKSDEICYLCNICGKSCSSKSSLDCHMKRHEENYTEKRNFKCEFCKKTFLQMVYLRTHIRRMHNDNRRRFTCDLCGKELASRYSFQLHRNVHDGIKLNECKLCGRKFNRKSALVEHIRTHSGEKPYTCKFCNKSFTQRTPLKIHLRHHTGERPYSCEICEEKTKYMGKKMLQCPFCPKTYSYECLLKKHWTVHTDHRLYSCKLCQKTFKSELALKKHSITHNNDDDNFKHKCTMCEAKFKSDSGIKLHLARHLQNYKFTCEICDKRFVSADGYKIHIEGKHNKSFLCNVCGKSFSGKTALKHHMITHEENYTKRQFKCEFCMKTFMQDLHLRRHTKRMHNDNRPKFICDLCGKEVNSSVSLRLHKNLHDGIKPHECKFCGKTFVLRHTLVIHIRTHTGEQPYKCSFCNKTFSQGSGLKIHLRQHPGERPYSCDICQEKFISKSILNAHLKSKHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -