Ipal009733.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Iselma pallidipennis
Gene Symbol
-
Assembly
GCA_037464855.1
Location
JAZBHA010001294.1:1-11812[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 3.3e-06 0.00014 21.8 2.1 1 23 41 63 41 63 0.97
2 23 3.9e-05 0.0017 18.4 3.8 1 23 69 91 69 91 0.91
3 23 8.6e-06 0.00037 20.4 0.9 1 23 97 119 97 119 0.99
4 23 2.8e-07 1.2e-05 25.1 0.7 1 23 125 147 125 147 0.98
5 23 1.4e-07 6.2e-06 26.0 2.8 1 23 153 175 153 175 0.99
6 23 8e-05 0.0035 17.4 3.8 1 23 181 203 181 203 0.99
7 23 5.8e-07 2.5e-05 24.1 4.8 1 23 209 231 209 231 0.98
8 23 9.6e-06 0.00042 20.3 0.2 1 23 237 259 237 259 0.97
9 23 2.2e-06 9.5e-05 22.3 4.6 1 23 265 287 265 287 0.99
10 23 1.1e-06 4.8e-05 23.3 0.8 1 23 293 315 293 315 0.97
11 23 0.00049 0.021 14.9 4.2 1 23 374 396 374 396 0.98
12 23 0.0019 0.082 13.1 0.6 1 23 411 433 411 433 0.90
13 23 6.2e-05 0.0027 17.8 0.6 1 23 439 462 439 463 0.95
14 23 0.00058 0.025 14.7 6.7 1 23 468 490 468 490 0.99
15 23 2.6e-06 0.00011 22.1 1.5 1 23 496 518 496 518 0.98
16 23 7.5e-06 0.00032 20.6 5.9 1 23 524 546 524 546 0.98
17 23 2.5e-06 0.00011 22.2 7.1 1 23 552 574 552 574 0.97
18 23 0.42 18 5.7 2.5 1 23 580 602 580 602 0.96
19 23 6.8e-06 0.0003 20.8 1.9 1 23 608 630 608 630 0.98
20 23 7.2e-07 3.1e-05 23.8 1.2 1 23 636 658 636 658 0.99
21 23 6.2e-05 0.0027 17.7 4.9 1 23 664 686 664 686 0.97
22 23 3.9 1.7e+02 2.6 1.4 1 8 692 699 692 700 0.93
23 23 0.0042 0.18 12.0 1.2 1 23 747 770 747 770 0.98

Sequence Information

Coding Sequence
atgataataactgtGGAAGTAACAACCAAATTGAAAAGAATCCCGAAATTGTGTTATGCAAATTTTCTACATAAAGAACAATTAGAATATCATATTGAATTACATAATCGTGAAACATTACATGAATGTAATGTGTGTGATAAAAAGTTTGTACGTGAAAAGGATTTAAATAGGCATTTGAAAGAGCATCCAGATTTACGTCCATTTACTTGTGAACattgtggtaaaaaatttcgaacaaatgaaaaattacgtaCACATTCCGTTCAACATACCGGTGAAAAACCATACGTATGTAACATTTGTAATACAAGATTTCCATATCGTACAAGTTTAAATGTACATGTACGTAAACATAgtggtgaaaaaccatttaaatgtaatgtGTGTGATAAAAGTTTTGCAGATAAGGGAACTCTAAAAAATCATTTAGtaacacatactggtgaaaaaccatatcAATGTCATTTATGTGGTAAAGGTTATTCACAAAATACAGATCTAAATAAGCATTTACgaacacatacaggtgaaaaaccatataaatgcCATCTATGTGAGAAAGGTTTTTCAGAAAAGAAATatctaaattatcatttactaacacatacaggtgaaaaaccatataaatgtcaTGTGTGTGGGAAAAGTTATTCAACAAAGAAATATCTAAAGAAGCATTTAgtaacacatacaggtgaaaaacctTATAAATGTGATCAATGTGATAAAGGTTTTGCAACAAAGACCCTtcttaatgatcatttaatagcacatacaggtgaaagaCAATATAAATGTCATCTTTGTGATAAGGAGTACACACATAGGGCAAGTTTACAATGGCATTTACGGACACATGATGATAATCTAGCGTATGTTTGTCAGtattgtggtaaaaaatttgcacaaaaacGATCcttaaatgatcatttaaatGGTCATACCGGTGCGAAACCGCatgtttgtaaaatattTTTAGATGATGTTGAAACCCCAATCAATGAAGATAATGATTTTACAGTAAATCCAGTAAAAATTGAGCAATTCTTAACAGCTAatgaaaaccaaaaagaaaaagaaataaatgacgataataagaaatttctaCAAGAATCATATAAATGCAGTAAGTGTAATAAAATCTTTCTACATAAAGAACAATTAGAATATCATATGAAATTACATAATCATAAAGCATTACATAAATTGCATACAGATGAACGCCGATTTATTTGTGAACATTGTGGTAAAACATTTCCAACTGACGCACGTTTACGTGGCCATTTCGTTATACATACTGGTGAGAAACCATATTTATGTGAAATTTGTAATACAAGTTTTCCATATCGTGCAAGTTTAAATGTACATGTACGTATACAACATCATAaggaaaaaccatataaatgtcaTCTTTGTGATAAAGATTTTAGACAAAGGCattctataaaatatcatttactAACACATtcaggtgaaaaaccatataaatgtcatatttgtgataaaggtTTTATATCAAAGGGatctttaaattatcatttagtaACACATACAGGCGAGaaaccatataaatgtcatctttgtgataaagatttttcacaaaagagacatctaaataatcatttagtaacacatacaggtgaaaaatcatataaatgtCATTTGTGTGATAAATGTTTTTCACATAAAGCGAATCTTAATAAGCATTTAGTAATACATACAGGTGTAAAACCACATAACTGTTATCTATGTGAGAAAAGTTATTGGAAAAAGAGTCGTCTAAATGATCATCTAGTAACtcatacaggtgaaaaaccatataaatgtcaTCTTTGTGATAAAGGTTTCACAGAAAAGGGAActctaaataatcatttagtaacacacacaggtgaaaaaccatataaatgtgaTTTATGTGGTAAAGGTTATTCACAAAAGACATATCTAAATAAGCATTTGATAACACATACGGGTGAAAAACCACATAGATGTCATCTTTGTGATAAAGGTTTTACACAAAAGCGatatttaaatgatcatttagtAACACATTCACGTGAAACAACATATAAATGCCATCTTTGTGATAAAGAACCTCAATTATTACAGACTCATATTGATAATAGTAGTAACAATGATAACAAAGGCAGTAACAATCAAGTTGCAAAGAAACCAGAAATTACTGAGAATCAAATGTTGCAATACCTACGTACCCATGTTATTAAAACATTGTACAAATGTAGTCTTTGTGAAGCCACTTTTGCAGGAAGACTATCATTAAAGATTCATTTAAACAGTTGCCATTATAAGAAACCTATTAGTGATAATAGTGGCaaagataaagaaataaatgacGATAGTAAGAAATTTCCACAACAATCATATATATCATATATAT
Protein Sequence
MIITVEVTTKLKRIPKLCYANFLHKEQLEYHIELHNRETLHECNVCDKKFVREKDLNRHLKEHPDLRPFTCEHCGKKFRTNEKLRTHSVQHTGEKPYVCNICNTRFPYRTSLNVHVRKHSGEKPFKCNVCDKSFADKGTLKNHLVTHTGEKPYQCHLCGKGYSQNTDLNKHLRTHTGEKPYKCHLCEKGFSEKKYLNYHLLTHTGEKPYKCHVCGKSYSTKKYLKKHLVTHTGEKPYKCDQCDKGFATKTLLNDHLIAHTGERQYKCHLCDKEYTHRASLQWHLRTHDDNLAYVCQYCGKKFAQKRSLNDHLNGHTGAKPHVCKIFLDDVETPINEDNDFTVNPVKIEQFLTANENQKEKEINDDNKKFLQESYKCSKCNKIFLHKEQLEYHMKLHNHKALHKLHTDERRFICEHCGKTFPTDARLRGHFVIHTGEKPYLCEICNTSFPYRASLNVHVRIQHHKEKPYKCHLCDKDFRQRHSIKYHLLTHSGEKPYKCHICDKGFISKGSLNYHLVTHTGEKPYKCHLCDKDFSQKRHLNNHLVTHTGEKSYKCHLCDKCFSHKANLNKHLVIHTGVKPHNCYLCEKSYWKKSRLNDHLVTHTGEKPYKCHLCDKGFTEKGTLNNHLVTHTGEKPYKCDLCGKGYSQKTYLNKHLITHTGEKPHRCHLCDKGFTQKRYLNDHLVTHSRETTYKCHLCDKEPQLLQTHIDNSSNNDNKGSNNQVAKKPEITENQMLQYLRTHVIKTLYKCSLCEATFAGRLSLKIHLNSCHYKKPISDNSGKDKEINDDSKKFPQQSYISYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-