Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010000280.1:2740-8086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 3.2e-05 0.0014 18.6 0.4 2 23 7 28 6 28 0.96

2 29 0.00015 0.0066 16.5 0.8 1 23 34 56 34 56 0.97

3 29 0.02 0.89 9.8 4.2 1 23 62 84 62 84 0.98

4 29 0.00031 0.014 15.5 0.4 2 23 91 113 91 113 0.93

5 29 0.013 0.56 10.5 6.8 1 23 118 140 118 140 0.96

6 29 0.0071 0.31 11.3 3.9 1 23 150 173 150 173 0.96

7 29 0.0045 0.19 11.9 1.6 1 23 180 202 180 202 0.96

8 29 7.8e-08 3.4e-06 26.9 1.9 2 23 209 230 209 230 0.98

9 29 2.3e-06 0.0001 22.2 0.6 1 23 236 258 236 258 0.98

10 29 0.0009 0.039 14.1 1.5 1 23 264 287 264 287 0.96

11 29 8.1e-08 3.5e-06 26.8 1.8 2 23 299 320 298 320 0.98

12 29 8e-08 3.5e-06 26.8 1.9 1 23 326 348 326 348 0.98

13 29 0.013 0.55 10.5 2.0 1 23 354 376 354 376 0.99

14 29 0.012 0.51 10.6 0.1 3 23 384 405 383 405 0.92

15 29 0.00016 0.0068 16.5 1.7 2 23 411 432 411 432 0.97

16 29 0.00039 0.017 15.2 4.0 1 23 442 465 442 465 0.98

17 29 0.00062 0.027 14.6 1.0 1 23 472 494 472 494 0.98

18 29 1.2e-06 5.3e-05 23.1 2.1 2 23 501 522 501 522 0.98

19 29 0.00012 0.005 16.9 7.9 1 23 528 550 528 550 0.98

20 29 3.7 1.6e+02 2.7 0.4 2 23 568 589 567 589 0.85

21 29 3.2e-07 1.4e-05 25.0 3.4 1 23 595 617 595 617 0.98

22 29 0.0013 0.057 13.6 5.1 1 23 622 644 622 644 0.97

23 29 0.1 4.3 7.7 0.2 3 23 652 673 651 673 0.93

24 29 4.2e-05 0.0018 18.3 2.0 3 23 680 700 678 700 0.97

25 29 0.072 3.1 8.1 0.8 3 23 708 726 707 726 0.93

26 29 0.00018 0.0079 16.3 0.2 3 23 734 754 732 754 0.97

27 29 8.8e-07 3.8e-05 23.6 1.3 1 23 760 782 760 782 0.98

28 29 3.7e-05 0.0016 18.5 0.1 1 23 788 810 788 810 0.98

29 29 0.25 11 6.4 3.4 1 23 816 839 816 839 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	3.2e-05	0.0014	18.6	0.4	2	23	7	28	6	28	0.96
2	29	0.00015	0.0066	16.5	0.8	1	23	34	56	34	56	0.97
3	29	0.02	0.89	9.8	4.2	1	23	62	84	62	84	0.98
4	29	0.00031	0.014	15.5	0.4	2	23	91	113	91	113	0.93
5	29	0.013	0.56	10.5	6.8	1	23	118	140	118	140	0.96
6	29	0.0071	0.31	11.3	3.9	1	23	150	173	150	173	0.96
7	29	0.0045	0.19	11.9	1.6	1	23	180	202	180	202	0.96
8	29	7.8e-08	3.4e-06	26.9	1.9	2	23	209	230	209	230	0.98
9	29	2.3e-06	0.0001	22.2	0.6	1	23	236	258	236	258	0.98
10	29	0.0009	0.039	14.1	1.5	1	23	264	287	264	287	0.96
11	29	8.1e-08	3.5e-06	26.8	1.8	2	23	299	320	298	320	0.98
12	29	8e-08	3.5e-06	26.8	1.9	1	23	326	348	326	348	0.98
13	29	0.013	0.55	10.5	2.0	1	23	354	376	354	376	0.99
14	29	0.012	0.51	10.6	0.1	3	23	384	405	383	405	0.92
15	29	0.00016	0.0068	16.5	1.7	2	23	411	432	411	432	0.97
16	29	0.00039	0.017	15.2	4.0	1	23	442	465	442	465	0.98
17	29	0.00062	0.027	14.6	1.0	1	23	472	494	472	494	0.98
18	29	1.2e-06	5.3e-05	23.1	2.1	2	23	501	522	501	522	0.98
19	29	0.00012	0.005	16.9	7.9	1	23	528	550	528	550	0.98
20	29	3.7	1.6e+02	2.7	0.4	2	23	568	589	567	589	0.85
21	29	3.2e-07	1.4e-05	25.0	3.4	1	23	595	617	595	617	0.98
22	29	0.0013	0.057	13.6	5.1	1	23	622	644	622	644	0.97
23	29	0.1	4.3	7.7	0.2	3	23	652	673	651	673	0.93
24	29	4.2e-05	0.0018	18.3	2.0	3	23	680	700	678	700	0.97
25	29	0.072	3.1	8.1	0.8	3	23	708	726	707	726	0.93
26	29	0.00018	0.0079	16.3	0.2	3	23	734	754	732	754	0.97
27	29	8.8e-07	3.8e-05	23.6	1.3	1	23	760	782	760	782	0.98
28	29	3.7e-05	0.0016	18.5	0.1	1	23	788	810	788	810	0.98
29	29	0.25	11	6.4	3.4	1	23	816	839	816	839	0.84

Sequence Information

Coding Sequence: ATGGGCAACCGTTTGCTGCAATGTCCGAAATGTCCAAACACATTCACCTCTAAAGCTCTATtgaataaacataaaattattcataaagaGACACGCCCGTATCATTGTGCAATCTGTAATcagaaattcaaacaaaaatcagcTGTATTGGCACATCAGATTGTTCATTATGATTCGAAACCATttgaatgtaatatttgtcagAGAACAATGAAAACACATCAAAGTTTTATCGATCATTATCGTCGTCATTTAAAAGATTACGTAGAATATTGTCAGATTTGTAATACTGGTTTTACATCAAAAGCCCAATATAGAATACATATGGAAGGTAAACATCAAAGGAACACACATATTTGTACAATATGtaataaatcgttttattgtaaatacacTTTGAACTACCATATGAAATTACATGACGACAATTACCACGAACAACGTAATTTCAAGTGTGAATTatgcaataaaacatttctACGTGAATTGCATTTGAATCgacataataaaaaagtacatACAGATGGTGGTCAGAAATACATCTGTGATGTATGTGGTAAagaattgaaaacaataactaGTTTTAAACACCATAAAAACGGCCATCAAGGTATTAAACCGAATGAATGTAGTGTATGTGGTAAGAAATTTAATCGTAAAGATACTTTAACACAACATATGCGTACACATTccggtgaaaaaccatatagTTGTGAAGTTTGTAATAAATCGTTTACACAACGTGGTCCGTTACGAATTCATTTACGGCAACATACCGGCGAGAAACCGTATTGTTGTGAAATCTGTCAAGAACGATTTGTTAGTAAAGGTGTGTTGACCatacatttgaaaaataagCACCAGAGAATgCCTGAATTGGTCTACCATATGAAACAATGTCCGAAATGTCCAAAAACGTTCAATTATTCATCACAATTGACTAAACACATGAAGATACATAATGAGAATCGTCCATACACATGTAAAATCTGCAACAAATCATTCAAACAGAAATCAAGCTTAGTTTCTCATCAGATGGTTCATGATGATTCTAAACCATATGAATGTGATATTTGTTTGAAACGTTTAAAGAAATACCAAAGTTTTATCGATCACCGACGACGTCATATGAGagattttaaagaattctGTCGAATTTGTAATGTTGGTTTTATATCGAATGCTGAATATAAAGCACATATGGATGGAAAGCATGGTGATCGCTCCAATGTCTGTCCAATATGTGGTAAAACATTCTATTGTAAATATGGTTTAAAATATCATATGAAATTACACGATGAAGGCTATCGTGAACAACGCAATTTTAAATGTGAATTATGCAATAAACGATTCCTgcaaaaattgcatttaaatCGACATATTAAAATGATGCATAAAGATGGTGGTCAGAAGTTTGTTTGTGATCTGTGTGGTAAAGAGTTACGAACAATGGTCAGTTTACGACACCATAAAAATGTCCATCAGGGTGCTAGACCGAATGAATGTAAATTGTGTGGTAAAAAGTTCAATCGTAAAACAACATTAGTTCTACATATGCGTACACATTCCGGTGAAAGACCGTATAGTTGTAAATTCTGTGGTAAATCGTTTACACAGAGATGTACATTAACGATCCATCACAGACAACATACAGGCGAGAAACCGTACAGTTGTGATATCTGTCAAGATAAATTCATTATCAAGTGTTCTGAATGTTCAAGAGTACTTGCTAAAACCTATTGGAAACAACATTTACTAGTAAAACACTCCAATATTCGTCCATATACttgtgaaatttgtaaaatgtcGTTTAAATCTAGTTCACATTTGAACAGACATCAACAAGTTCATGGTTCATGTGATTATGAATGCGATATatgtaaaaagaaatttcGACATTACCAATATGTTAAAAAACATCGTTTACTACATTTAAACAAGAATAGGAGAATGTGTCAAATTTGTGGTGAAGGTTTTCAAGTTATTCCGGAATTTCATAAACATATGGAAGAACAACACCAAGTCTCAGCATTTGGTTGTTCGATTTGTAAAAGAACATTTACCAATAATCGTTCGTTAAAAAACCATGTGAAACTACATAAAGACGAAGACGACTCTCTGTGTAAAATATGCAATAAAAGATTcgtatatttagaaaaacatataaaaatcgTACATGAACAACGTGAGAAATCGATTTGTGACATATGTGGAAAGGAAATAAGCTCAAAAGAATCATTAAGAGATCATAGAAATGTTCATTTAGGTGTAAAGTCTTTTGAATGTAGTACATGTGGAAAGAAATTCGCTAAAAAGTCAACATTAGTGTCACATGTGcgaacacatactggtgaaaaaccgtacatttgttatatttgtggAAAGATGTTTTCACAACGAGCTCCAATGGTTATTCATGTAcgaacacatactggtgaaagaCCATAcgattgtaatatttgtgaaaagaAGTTCATCAGTAAATATGCTCGTGATTGTCATCTAAAAACGAAACATCAAACAATGTGA
Protein Sequence: MGNRLLQCPKCPNTFTSKALLNKHKIIHKETRPYHCAICNQKFKQKSAVLAHQIVHYDSKPFECNICQRTMKTHQSFIDHYRRHLKDYVEYCQICNTGFTSKAQYRIHMEGKHQRNTHICTICNKSFYCKYTLNYHMKLHDDNYHEQRNFKCELCNKTFLRELHLNRHNKKVHTDGGQKYICDVCGKELKTITSFKHHKNGHQGIKPNECSVCGKKFNRKDTLTQHMRTHSGEKPYSCEVCNKSFTQRGPLRIHLRQHTGEKPYCCEICQERFVSKGVLTIHLKNKHQRMPELVYHMKQCPKCPKTFNYSSQLTKHMKIHNENRPYTCKICNKSFKQKSSLVSHQMVHDDSKPYECDICLKRLKKYQSFIDHRRRHMRDFKEFCRICNVGFISNAEYKAHMDGKHGDRSNVCPICGKTFYCKYGLKYHMKLHDEGYREQRNFKCELCNKRFLQKLHLNRHIKMMHKDGGQKFVCDLCGKELRTMVSLRHHKNVHQGARPNECKLCGKKFNRKTTLVLHMRTHSGERPYSCKFCGKSFTQRCTLTIHHRQHTGEKPYSCDICQDKFIIKCSECSRVLAKTYWKQHLLVKHSNIRPYTCEICKMSFKSSSHLNRHQQVHGSCDYECDICKKKFRHYQYVKKHRLLHLNKNRRMCQICGEGFQVIPEFHKHMEEQHQVSAFGCSICKRTFTNNRSLKNHVKLHKDEDDSLCKICNKRFVYLEKHIKIVHEQREKSICDICGKEISSKESLRDHRNVHLGVKSFECSTCGKKFAKKSTLVSHVRTHTGEKPYICYICGKMFSQRAPMVIHVRTHTGERPYDCNICEKKFISKYARDCHLKTKHQTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -