Ipal010518.2
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001608.1:13527-16926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00024 0.011 15.9 1.0 1 23 63 85 63 85 0.98 2 21 4.1e-06 0.00018 21.5 0.8 1 23 93 115 93 115 0.98 3 21 3.4e-06 0.00015 21.7 1.2 1 23 123 145 123 145 0.98 4 21 0.00022 0.0093 16.0 1.5 1 23 151 174 151 175 0.92 5 21 3.4e-07 1.5e-05 24.9 3.1 1 23 180 202 180 202 0.99 6 21 1.1e-05 0.00048 20.1 0.5 3 23 210 230 209 230 0.98 7 21 2e-05 0.00086 19.3 2.5 1 23 236 258 236 258 0.98 8 21 8.8e-07 3.8e-05 23.6 0.8 1 23 264 287 264 287 0.98 9 21 9.4e-06 0.00041 20.3 1.2 1 23 293 315 293 315 0.95 10 21 0.0014 0.06 13.5 5.1 1 23 320 342 320 342 0.97 11 21 1.9e-06 8.1e-05 22.5 4.2 1 23 348 370 348 370 0.99 12 21 1.3e-05 0.00055 19.9 0.1 1 23 512 534 512 534 0.97 13 21 5.2e-06 0.00023 21.1 0.3 1 23 540 562 540 562 0.98 14 21 1e-05 0.00044 20.2 1.2 2 23 569 590 568 590 0.96 15 21 7.6e-08 3.3e-06 26.9 1.2 1 23 596 618 596 618 0.99 16 21 2.2e-06 9.7e-05 22.3 1.3 1 23 624 647 624 647 0.97 17 21 6e-05 0.0026 17.8 2.7 1 23 653 675 653 675 0.98 18 21 1.7e-05 0.00074 19.5 1.4 1 23 684 706 684 706 0.98 19 21 0.00056 0.024 14.8 3.9 1 23 712 734 712 734 0.98 20 21 7e-06 0.0003 20.7 2.6 1 23 740 762 740 762 0.98 21 21 4.7e-08 2e-06 27.6 0.9 1 23 768 790 768 790 0.99
Sequence Information
- Coding Sequence
- ATGGatcattttcataaattcaaacaacagATTCTTAACAATGATGCTGTGTTACGTTCTATATTAAAGAGGCGTAAAGAAAACGATCAAgagatattgaaaaatgtcGATTATATCAAAAGTGAAATTTCTgttgaagaacaaaaaattactgCAGAAGCTAGTCCAGAGAACGGAATAGATAAATTCGAATGTACTGTTTGTAATGAGAAATTTGAAACTGATGTCCAACTACATAGACATTTACTTATTCATTGCAACGATAAACCTCACATATTCGAATGTACTATTTGTCGTAAAGAATTTAAAACTGGTGTCCAACTACAAAGACATTTACGTATTCATTGCAATGATAAACCTAACATATTCGAATGTACTATTTGTCGTAAAGAATTTAAAACTGATGTCCAATTACGTAGACATTTACGTATCCATTGTGAGGACAAACCTCACATCTGTGAGATTTGTGGTAAAAGATTCATTATAGCTTATGATCTAAAAAGACACTCCATATCAAATCATCATAAAGAAACTAGATATGAATGTAATGATTGTGGGaagaaattctattatttatccCATTTAAAAGTACATTTACAAACTCATAGTGGTGAAAAACTAAATGCTTGCAGTATATGTAATAAGCCGTTCCGTTCACAACGTGATATAACTATTCATATGAGAAGTCATACAAACAAGAAACCGTATCCTTGTAATCTTTGTGAACGATCATTTACGTATAGTTatacattaaaattacataaaaaaactCACACCGGTGAACGTCCATTTCAATGTTCTGAATGTGGTAAAGGTTTCGGACAGAAAACACAATTATCTGTACATATTCGTAAATACCATACATTAGAATATGCTTATATGTGTAATTATTGTGGACTTCGATTTGTTACAAATGGTGAACTGAAAAGACACACATTTCAGCATACTGATGAACATCATAGTTGTACAGTTTGTGAGAAGAAATTCGTTACTGCAACAGAACTACGTTGTCATATGAGAAAACATACTGGTGAAATGCCTTATCAATGTGATATCTGTAAGAAGAAATTTCGTTATTCACAAAGTTTGAGAAGTCATCAAAGGAGACATACAGGCGAGAAAAAAATAGGAATAAATCCAGGGGCGGACTATCCCGTACGGCTGAATGCAGGCCGAAGATCTACGGTGgtAGGACAGAATGATGGTCTTCCTCAATTCATTTGTGAAATATGTACATCAGAAATTGGCcgttttcataaatttaaacaacaaattattaataacgaTATTATGCTACGTTCTGTATTAAAAAACCGTGAAAAATGTGCAGAACATCAACAATTGTCCGAATACGTTAATATTAAAACTGAATTTCCTTCAAGTGATGAGAGAATTCCATTACAATCAGACAGTGATAGATCAGTTCCTAGTAccgaaacaaataatattcaatgtattatttgtaataaaggaTTGGAAAATATTCGTCGTACATTACGTCGACATTTACACGTTCATGCTGACCGTCAACCGCATGTTTGTGATATATGTGGCAAAGGATTTGCTGTCGCTACTGATCTAGCACAACATATACAACGacataataaagaaacaaaatttgaatgtAACGAATGTGGAATGAAATTCAATCAACTGTCAGTGTTAAGAGTTCATTTACGTATACATAGTGGTGAGAAACCGTGTGTATGTGAAGTATGCAATAAACCATTTCGTACACCACGTGAAGTTAAATTACATATGAGAAGtcatacaggtgaaaaaccatatacTTGTGAAGTTTGTGGTAGATCATTTTCACgaaataattcattgaaaGGACATCAACGAACACATAGCACTGAACGTTCATTTGTTTGTTCTGTATGTGGTAAAGGTTTCAAACAACGTAATAACTTAATGGTACATTTTCGTAGAAAACATACCACCGATCGTCCATACATGTGTAGTACGTGTGGTTTAAGTTTTGCTGATAGTACATCATTCAAACATCACACCAGAGAACATACCGGTGAGAAACGACCAATGAAACATCGTTGTACAGTTTGTGAGAAACGATTTTATAGTCCAACTGATGTACAGATTCATATGAGAATTCATACTGGTGAAATGCCATATGAATGTGATTTTTGTCAAaagaaatttcgatttttaacaaatatgaaAAGTCATCGGAAAATACATACCGGTGAGAAAAATCATAAATGTACATTTTGTAATAAAGCATTTCGTGCATCGtcaacattaaaaatacatattcgTGTTCATACTGGTGAGAGACCGTTTAAATGTCAAGTGTGTGGTAAAGCTTTTACACAGAATACTGCTCTAAAGACACATATGAAGGTGCATCGCAGTAAAACCAAATGA
- Protein Sequence
- MDHFHKFKQQILNNDAVLRSILKRRKENDQEILKNVDYIKSEISVEEQKITAEASPENGIDKFECTVCNEKFETDVQLHRHLLIHCNDKPHIFECTICRKEFKTGVQLQRHLRIHCNDKPNIFECTICRKEFKTDVQLRRHLRIHCEDKPHICEICGKRFIIAYDLKRHSISNHHKETRYECNDCGKKFYYLSHLKVHLQTHSGEKLNACSICNKPFRSQRDITIHMRSHTNKKPYPCNLCERSFTYSYTLKLHKKTHTGERPFQCSECGKGFGQKTQLSVHIRKYHTLEYAYMCNYCGLRFVTNGELKRHTFQHTDEHHSCTVCEKKFVTATELRCHMRKHTGEMPYQCDICKKKFRYSQSLRSHQRRHTGEKKIGINPGADYPVRLNAGRRSTVVGQNDGLPQFICEICTSEIGRFHKFKQQIINNDIMLRSVLKNREKCAEHQQLSEYVNIKTEFPSSDERIPLQSDSDRSVPSTETNNIQCIICNKGLENIRRTLRRHLHVHADRQPHVCDICGKGFAVATDLAQHIQRHNKETKFECNECGMKFNQLSVLRVHLRIHSGEKPCVCEVCNKPFRTPREVKLHMRSHTGEKPYTCEVCGRSFSRNNSLKGHQRTHSTERSFVCSVCGKGFKQRNNLMVHFRRKHTTDRPYMCSTCGLSFADSTSFKHHTREHTGEKRPMKHRCTVCEKRFYSPTDVQIHMRIHTGEMPYECDFCQKKFRFLTNMKSHRKIHTGEKNHKCTFCNKAFRASSTLKIHIRVHTGERPFKCQVCGKAFTQNTALKTHMKVHRSKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -