Ipal004030.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- wek_1
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000280.1:8571-12771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 1e-05 0.00043 20.2 4.9 2 23 7 28 6 28 0.96 2 31 1.7e-06 7.3e-05 22.7 3.0 1 23 34 56 34 56 0.98 3 31 0.011 0.49 10.6 0.8 1 23 62 84 62 84 0.99 4 31 0.015 0.67 10.2 0.1 3 23 92 113 91 113 0.96 5 31 7.1e-06 0.00031 20.7 2.5 3 23 118 138 117 138 0.97 6 31 0.033 1.4 9.2 3.8 2 23 149 171 148 171 0.96 7 31 0.00053 0.023 14.8 0.7 1 23 178 200 178 200 0.98 8 31 1.7e-06 7.2e-05 22.7 1.9 1 23 206 228 206 228 0.98 9 31 1.1e-05 0.00046 20.2 0.1 1 23 234 256 234 256 0.98 10 31 3.4e-05 0.0015 18.6 0.1 1 23 287 309 287 309 0.98 11 31 0.0033 0.14 12.3 3.1 1 23 315 337 315 337 0.98 12 31 0.0026 0.11 12.7 2.0 2 23 344 366 344 366 0.95 13 31 7.6e-06 0.00033 20.6 2.6 2 23 372 393 372 393 0.96 14 31 0.00034 0.015 15.4 1.5 3 23 405 426 403 426 0.96 15 31 0.036 1.6 9.0 1.1 1 23 433 455 433 455 0.97 16 31 2.8e-07 1.2e-05 25.1 1.6 2 23 462 483 461 483 0.98 17 31 2.6e-05 0.0011 18.9 0.1 1 23 489 511 489 511 0.98 18 31 0.00088 0.038 14.1 2.1 1 23 517 540 517 540 0.97 19 31 0.00013 0.0058 16.7 0.4 1 23 552 574 552 574 0.97 20 31 0.016 0.7 10.2 2.7 1 23 580 602 580 602 0.99 21 31 0.0018 0.079 13.1 1.9 2 23 609 631 609 631 0.94 22 31 3.1e-05 0.0014 18.7 3.3 3 23 638 658 637 658 0.97 23 31 0.0011 0.046 13.9 2.1 1 23 668 691 668 691 0.96 24 31 0.026 1.1 9.5 1.0 1 23 696 718 696 718 0.97 25 31 7e-08 3e-06 27.0 1.6 2 23 725 746 725 746 0.98 26 31 1.6e-06 7.2e-05 22.7 0.2 1 23 752 774 752 774 0.98 27 31 0.016 0.68 10.2 5.7 1 23 809 832 809 832 0.95 28 31 0.0033 0.14 12.3 1.0 1 23 839 861 839 861 0.97 29 31 0.0072 0.31 11.3 2.2 2 23 868 889 868 889 0.97 30 31 8e-05 0.0035 17.4 1.1 1 21 895 915 895 916 0.96 31 31 0.012 0.54 10.5 1.2 1 23 923 946 923 946 0.95
Sequence Information
- Coding Sequence
- ATGGCCAACAGATCAAAGCAATGTCCTCACTGTCCAAAGACttttaaaaagaaacgacaattacgaaaacatttatttgtcCATACTGAAAATCGACCATATTCATGTGATATATGTACAAAGAGCTTTAAACGTCGAGAAACATTAACTCGCCATAGAAATAATCATGATAATGCAACCTTTTACGAATGTGATATATGTTTGAAGCAGATCAAAACAAAATTGGGTTTCATTAGTCATCAACGTCGTCATATGAAAGATTTCAAAGAGATCTGTAGTAtctgtggtggtggttttataTCAACAGCTGAATATCGTTCACATATGGCCAGTAAACATGGTAATAATATGTGTGATATTTGTCAGAAGACATTTTGCGATAAATATGCATTGAAAGAACACATGAAATTGCATGATGCAAATTATTACGAAAATCGTAATATAAAATGCGAATTTTGTTCGAAAACTTTTCTACAAATGCTACatttaaagaaacatattAAACGAATGCATAACGATAATCGACAGAAATACATTTGTGATTTGTGTGgaaaagaattgaaaagtCTTACAGGCTTAAAGAATCATCATAATGTCCATCAAGGTGAAAAGACACATGTTTGTACAGTTTGTGAGAAGAAATTCGTACGTAAAGATACATTAGTATTACATATGCGTACACATTccggtgaaaaaccatatatCTGTCAAGTTTGTGGAAAAGCTTATTCACAATTAAGTCCATTACGAATCCATCTACGACAGCATTCCGGCGAAAAACCATATTCATGCGATATTTGCCAAAATAAGACTGGCCAATCGAGCAACAGTCCGGCAAAACATCAAAAAAGTCAACCGTATAGCTGTCCACTATGTAATAAAAGATTTCGTGTAAAATCAGCTGTATTAGCACATCAGATTGTGCATTATGATACGAAACCATTTGAATGTGAATTTTGCcagaaaaaactgaaacaatatTATACTTATATAGCACATCGTCGGCGTCATTTAGAAGATTCCAATGAATATTGTCAGATTTGTCATACtggttttatatcaaaaacTGAATACAAACTACACATGGAAAGTAAACATGATAATACGGCAAATGTTTGCACAATATGCCATAAAACATTCTCCACTAAATATTATCTACAAGACCATGTGAAATTACATGACGAAAACTATTATAAAGAACGTAATTCTATTTGTCAGATCTGTAATAAGACATTTCTGCGACAGAAACATCTCGATCAACATATACGTATAGCACATACTGACGCTGGTCGTAAATATGTTTGTGATTTGTGTGGTAAAGAAATGTCAACAATGACCAAATTAACATACCATAAGAACTACCATCAAGGTATTAAACCGAATCAATGTAATCAATgtggtaaaaaatttaatcgtAAAGATACTTTAGTACAACATATGCGTATCCATTCCGGTGAGAAACCGTACAGTTGTGAGTTTTGTGGAAAAGCATTCTCTCAAGGAGCACCATTAAAAGTCCACATAAGACAACATACCGGTGAAAAACCGTATTCGTGTAATATTTGTCATGCACGTTTTATCAGTAAACGTGTATtaacaattcatttaaaaagcAAACACCAAAAAGTGGTTGATCCTGTAAAAAAGATGAACTATTTCTGTCCAATTTGCAACAAAGGCTGTCGATCAAAATCAGCTGTATTGGCACATCAGATTGTCCATTATGATTCGAAACCGTTTCAATGCGATACATGtttgaaagaattgaaaaCCTACGAGAGTTACATGACACATCGTCGTCGACATATACAAGATTACAAAGAATATTGTACGATTTGCAATATTGGGTTTGTGACGAAATGcgaatataaaaatcatatgCAAGGCAAACATAATAAAGACGCCAATATTTGTtcaatatgtaataaaacattttacaGTAAATACTGTTTACAAGATCATATGAAATTACATCaagacaattattataaagaacgtaattttatttgtgaaGTATGCAGTAAAACCTTTCTACGACAGAAACATCTCGACCAACATATTCGATTATCACATAGTGATCGTAAATATATTTGTGATTTGTGTGGTAAAGAGATGTCAACATTAACGAAATTAACATACCATAAAAACTACCATCAAGGTATCAAACCGAATGAATGTAAAATCTGTGGAAAGAGATTCAATCGTAAAGATACTTTAGTACAACATATGCGTACACATTCCGGTGAGAAACCGTATAATTGTGAGGTTTGTGGAAAATCATTTTCACAAGGTGGACCATTGAAGATACATATGAGACGgcatactggtgaaaaaccgttTGCCTGTAATATCTGTCAGGAACGTCGATACTATTTACGTTATCATATGAAATTACATGATGCTAATTATCTTGAACAACGCAATTTTCTGTGTGAATTCTGTCATAAAACATTTCTACAAAAGATCCATTTAGATCGACATATTCGTCGAACCCATACAGATGGTggacaaaaatatatttgtgatttatgtggtaaagaattaaaaacaatGACTAGTCTgaaatatcataaaaataatcatcaagGCATTAAACAGAATGAATGTCATCTATGTGGCAACAAATTCAATCGTAAAGCAACTTCAATACAACATATGCGAATACATTctggtgaaaaaccgtatTGTTGTCAAATTTGTGATAAGAAATTCTCACAACGAGCACCATTACAAATTCATCTCAGACAATATACTGGTGAAGAACCATTCGCTTGTGACATTTGTCACAGGAAATCTATTAGTAAAGGTGTTCTAAGGGTTCATCTGAAGAACAAACACAAGAAATGTGAATAG
- Protein Sequence
- MANRSKQCPHCPKTFKKKRQLRKHLFVHTENRPYSCDICTKSFKRRETLTRHRNNHDNATFYECDICLKQIKTKLGFISHQRRHMKDFKEICSICGGGFISTAEYRSHMASKHGNNMCDICQKTFCDKYALKEHMKLHDANYYENRNIKCEFCSKTFLQMLHLKKHIKRMHNDNRQKYICDLCGKELKSLTGLKNHHNVHQGEKTHVCTVCEKKFVRKDTLVLHMRTHSGEKPYICQVCGKAYSQLSPLRIHLRQHSGEKPYSCDICQNKTGQSSNSPAKHQKSQPYSCPLCNKRFRVKSAVLAHQIVHYDTKPFECEFCQKKLKQYYTYIAHRRRHLEDSNEYCQICHTGFISKTEYKLHMESKHDNTANVCTICHKTFSTKYYLQDHVKLHDENYYKERNSICQICNKTFLRQKHLDQHIRIAHTDAGRKYVCDLCGKEMSTMTKLTYHKNYHQGIKPNQCNQCGKKFNRKDTLVQHMRIHSGEKPYSCEFCGKAFSQGAPLKVHIRQHTGEKPYSCNICHARFISKRVLTIHLKSKHQKVVDPVKKMNYFCPICNKGCRSKSAVLAHQIVHYDSKPFQCDTCLKELKTYESYMTHRRRHIQDYKEYCTICNIGFVTKCEYKNHMQGKHNKDANICSICNKTFYSKYCLQDHMKLHQDNYYKERNFICEVCSKTFLRQKHLDQHIRLSHSDRKYICDLCGKEMSTLTKLTYHKNYHQGIKPNECKICGKRFNRKDTLVQHMRTHSGEKPYNCEVCGKSFSQGGPLKIHMRRHTGEKPFACNICQERRYYLRYHMKLHDANYLEQRNFLCEFCHKTFLQKIHLDRHIRRTHTDGGQKYICDLCGKELKTMTSLKYHKNNHQGIKQNECHLCGNKFNRKATSIQHMRIHSGEKPYCCQICDKKFSQRAPLQIHLRQYTGEEPFACDICHRKSISKGVLRVHLKNKHKKCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -