Ipal009259.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Iselma pallidipennis
Gene Symbol
-
Assembly
GCA_037464855.1
Location
JAZBHA010001159.1:1-28167[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 49 0.00084 0.037 14.2 4.8 1 23 157 179 157 179 0.97
2 49 1.3e-06 5.7e-05 23.0 3.0 1 23 184 206 184 206 0.99
3 49 2.7e-07 1.2e-05 25.2 0.8 1 23 212 234 212 234 0.99
4 49 0.018 0.78 10.0 1.7 1 23 240 262 240 262 0.97
5 49 2.3e-05 0.00099 19.1 4.4 1 23 379 401 379 401 0.98
6 49 7.4e-07 3.2e-05 23.8 0.9 2 23 411 432 410 432 0.97
7 49 6.5e-07 2.8e-05 24.0 1.2 1 23 438 460 438 460 0.96
8 49 0.00029 0.012 15.7 3.6 1 23 466 488 466 488 0.97
9 49 0.00056 0.024 14.7 0.8 1 23 494 517 494 517 0.97
10 49 1.5e-05 0.00063 19.7 0.3 1 23 531 553 531 553 0.96
11 49 8.5e-07 3.7e-05 23.6 0.2 1 23 559 581 559 581 0.98
12 49 0.27 12 6.3 0.2 2 13 589 600 588 604 0.85
13 49 9.7e-05 0.0042 17.1 5.3 1 23 667 689 667 689 0.98
14 49 0.024 1 9.6 1.3 2 23 694 717 693 717 0.83
15 49 0.063 2.7 8.3 0.3 2 23 727 747 726 747 0.96
16 49 0.0015 0.064 13.4 2.4 1 23 753 775 753 775 0.97
17 49 1.8e-05 0.00077 19.5 2.0 1 23 781 803 781 803 0.98
18 49 0.00013 0.0055 16.8 3.9 1 23 809 831 809 831 0.99
19 49 0.0081 0.35 11.1 1.9 1 23 837 859 837 859 0.90
20 49 7.6e-05 0.0033 17.5 0.9 1 23 865 887 865 887 0.98
21 49 0.017 0.75 10.1 0.0 1 23 893 915 893 915 0.94
22 49 0.00015 0.0065 16.5 1.4 1 23 921 943 921 943 0.96
23 49 0.00053 0.023 14.8 2.3 1 23 949 971 949 971 0.98
24 49 0.00058 0.025 14.7 1.9 1 23 976 998 976 998 0.98
25 49 0.0015 0.065 13.4 2.1 1 23 1004 1026 1004 1026 0.97
26 49 4.5e-05 0.002 18.2 2.7 1 23 1032 1054 1032 1054 0.98
27 49 0.00064 0.028 14.6 1.5 1 23 1061 1083 1061 1083 0.97
28 49 0.00017 0.0073 16.4 1.8 1 23 1090 1112 1090 1112 0.98
29 49 0.00077 0.034 14.3 7.0 1 23 1118 1140 1118 1140 0.98
30 49 0.0024 0.11 12.7 1.1 2 23 1146 1167 1145 1167 0.96
31 49 0.0001 0.0043 17.1 1.3 1 21 1174 1194 1174 1195 0.95
32 49 2.3e-06 0.0001 22.2 0.9 1 23 1301 1323 1301 1323 0.98
33 49 1.2e-06 5.4e-05 23.1 0.3 1 23 1329 1351 1329 1351 0.97
34 49 9.7e-05 0.0042 17.1 1.2 2 23 1359 1380 1358 1381 0.94
35 49 0.16 7.2 7.0 3.0 1 23 1475 1497 1475 1497 0.96
36 49 0.0035 0.15 12.2 0.4 2 23 1503 1524 1502 1524 0.97
37 49 0.00012 0.0053 16.8 0.7 5 23 1531 1549 1529 1549 0.95
38 49 0.0017 0.073 13.2 1.3 1 23 1555 1578 1555 1578 0.93
39 49 1.6e-05 0.0007 19.6 0.8 1 23 1583 1605 1583 1605 0.97
40 49 0.0005 0.022 14.9 2.2 1 23 1846 1868 1846 1868 0.98
41 49 0.00034 0.015 15.4 2.4 2 23 1879 1900 1878 1900 0.97
42 49 5.3e-07 2.3e-05 24.3 3.0 1 23 1906 1928 1906 1928 0.97
43 49 0.0034 0.15 12.3 5.5 1 23 1934 1956 1934 1956 0.96
44 49 4.3e-05 0.0019 18.3 1.2 1 23 1962 1984 1962 1984 0.98
45 49 1.8e-05 0.00076 19.5 0.8 1 23 1989 2011 1989 2011 0.97
46 49 0.00015 0.0064 16.6 2.4 3 23 2019 2039 2017 2039 0.96
47 49 3.1e-06 0.00013 21.9 4.2 1 23 2045 2067 2045 2067 0.95
48 49 3.4 1.5e+02 2.8 0.8 1 15 2082 2096 2082 2098 0.83
49 49 3.5 1.5e+02 2.8 0.1 3 17 2137 2151 2135 2152 0.89

Sequence Information

Coding Sequence
TTAGATATGGAATTTGATATCAAAATCGAAGATGATCCTGTTGAAATTAATGCAAATGATAACAGTTTGGAAATCAAGAACGAATATCTGGATGATGAAACTACCGGcaatataatcaatgaaaatcaaGGATATTTTCACGATgatgtaaaaattgaaatcgtaGAACATCCAGTGAAAACTGattTCTATAATCGAACTGATAAGGATAGCATTGATATTATGGAATTTGAAATCAAACGTGAAGATGATGATCCTCTTGCAATTAATGCAAATGATAACAGTTCGGAAATCAAGAACGAATATCTGGATGATGAAACTAATACCAACAATCAGGCATATTTTCAGGATGATGTGAAAATCGAAATCGTAGAATATCCAGTGAAAACTGaaaataatgaaatcgACGAGAATCAAGAATCGCTAGCTGATCCTGAAAACGAAGAGAAAAGCTCAAAAAAGGgcaaatataaatgtgaaatatgtggTAAGTGTTTTGTTCTTCGAcgatatttcaataaacattcaAAATTACATGATAAAAGACCATttacatgtaatatttgtgataaagaGTTCGCACGTAAATATCATTTAGATAGACATTTACaaacacatactggtgaacgaccatttaaatgtgaggTTTGTGATAAAGGTTTTAAAACAACATCGAATTTAAAAGCTCATTTATTGACTCATAATAAGGCAAAATCATTCGTTTGTAGTGTTTGCAATGGACGTTTTCCAAATGAAAACTGTTTAAACAAACATTCAAGATTGCATAGTTTAAATGAAACGTTTCAATCTAATTCCCAATTTCAACAAGATTTTTGTGATCGAACTGATAAGGCTGGCTCTGATATGGAATTTGAAATCAAACGTGAAGATGATCCTCTTGAAATGAATACAAATGATGATAGTTCGGGTTCGAATAGTAAaactgataatgatgataatgatggaatCAAAATCAAGAACGAAGATCTAGATGGAGAAATCAATGAAACTCAAGTATTTTATTGCGATGATGTGAAAATAGAAATCGTGGAACATCCAATAGAAATTGaaaataatgagaatCAAGATGATGGGGGcaataatcaaaaagaaacCAACTCAAAAGACAcgaaatataaatgtgaaacatGTGGTAAATGTTTTGTTTCTCGTGGATATTTCAagaaacatttacaattacatggtattaatattgatgatgaaccaattacatgtaatatttgtggtaaagTGTTTACACATAGTAGTTCATTAGGACGACATTTACGTGCACATACTGGTGCTagaccatttaaatgtgagatttgtgGTAAAACGTTTCAAACTAGATCGAATTTAAATGCACATTTATCATTTCataataaacagaaacaatATATTTGTGAGATTTGTAATAAGAGTTATACAAATAATCTCTATTTAAAgcatcatttaaaatttcatcgtGAAAATCAACCGTTTCAATGTACTGTTTGTCAAAAGAAATTCCCATTAAAAGGtcttttaaatcaacattttaaaGTCGTTCATACTGAGAAACAATtccaatttcataataatgaaaaattatttatttgtgatatttgtggtAAGGAATTTGCTAGACATTCTACACTTCGAGAACATTTAATAGCACATACTGGTgataaaccatttaaatgtgaaatttgtgGTAAAGGTTTTATACGTAAATCAGctttaaatgatcatttatcAGTTCATAATGATGGAAAATCTTCGCTTACatgtgatatttgtaataaaacatttagCATTAAAGatGAGACAACAGACAGTGATaagaataatgatgaaatcGAAATAAAGGACCAGGATACTGAAAATCCCGGATTTCTGGAAGATGatgtgaaaattgaaattgtagaACATCCCccaaaaattgacaatGATGAAATCGTAGTACAGGAAAAACACGAAGTTCCCGATAATgaacaaattaatttgaaagaaaacaaatataaatgtgaaacatGTGGTAAGTGTTTTGTACGTAAACGGTTCttcaataaacatttacaAGCACATAAAGAACCACttatatgtaatatttgtggtaaagaATTCTCTTTTAAGAGCAAAACATATTTTACTAAACATGtacaacaacataataataataatagtaataataatgttgaatgtAAAATATGCGGGAAAAATGTTACAGAAACTTATTATAAAgcacatttaaaattacatagtAACGATCAACCATTTGTAtgcaatatttgtaataagagATTTAAATTAAAGCAACGTTTAGTGAAACATTTTGAAACACATAGTGGTGAACGACCATTTGTATgtgatatttgtgaaaaacgatatacaaataaatgtgCTTTAACAGCCcatttaaaaacacataatccaataaaaccatttacttgtcatatttgtaataaaagatgGAACAGAAAAGATCAGTTACAAAAACATTTGATGACACATACTGGTgcaaaaccatttaaatgtgatgTTTGTGATAAAGATTTCGCAAATCAGAAaagtttgaaatttcattcaacGAGTCATAATGACGACAAACCATTCATTTGTgagatttgtaataaaagatttccgttaaaacaaaaattaactataCATTTGAAGACACATAGTGGTGAAAAACCGTTTATATGTGATGTTTGTAATAAAGGGTTTGCAAATGGATTTGGTTTACGCCAACATGCAGTCGTTCATACTAAATTAAAACCATTCACTTGTGATACTTgtaaaacacaatttacattgaaaagtAATCTAGTTAGACACATGGTGTTACATAATAAAGAGAAACCGTTCAAATGTGatgtttgtaataaagatttcccgcataaaaatgttttaaaacaacatcaaacaattcataataaacaaGTATTTACGTGTAATATTTGCGATCGACAAATTGTCTCGAAATGGCATTTTAAACGACATTTAATGGTACATAGTGGCCAGTTATCGTATGATTGtaagatttgtaataaaaaattggcaTCGAGTTGTTGGTTAAGGTTACATATGAAATTACATTTAGACGAGAAACCattcaaatgtaatatttgtaataaagacTTTGCACATAAAAcacttttaaatattcatttaagTAAACATAccgtaaaaaaagaaatatttacatgtaaaatatgcaataaaaaAGTCACATCGAAATggtattatcaacaacatttaATGGCACATCGTGGTGAATTACCAACATATGAATGTAAGATTTGTAATAAGAAACTTACATCACgtaaatcattgaatttacatttaaaattacatacaGATGATAAACCGTTTAAATGTAATCAGTGTGATAAACGGTTCCAACATAGAACTCTATTAAAAAGACATTCAAGATACCATAATACAGAAATAATTACATGTAAGATATGTAATCgaaaaatttcgaataaatGGAGTTACAATAGACATTTACAGTTACATAATCATTGTAGAAAATCATTCAAGTGTGATGattgtggtaaaaaatttgtaactAAAGACGGTTGGCAACATCATACCAATTTTCCAAAAATGGTATCACAAGCTACTTCCCAATTCCaacaagatttttataatcaaactgATAAGGATAGTTTGGATATggaatttaaaatcaaacctGAATATGATCCTTTTGAAATTAATGCAAATGATAACGATAGTTCAGGTTCGGATAGTAaaactgataatgataatgatggaatCAAAATCAAGACCGAATATCTGGTTGATGAAACTACCGACAATATAATGCATCAAATTCAAGGATATTTTCAGGATGAtgtaaaaatggaaattgaagAACATCTCGTGAAAACTGttcataataatgaacaacTATTTGTTTGTAATGTTTGTGATAAGGAATTTGCAAGACATTCGGCACTTAAAGAACATTTAATGACACATACCGGTGATAAACCTTttaaatgtgagatttgtgGTAAAGGTTTTATACgtcaaacaaatttaaatgatcatttattattgcatAATGGTGAAAAATCACCTATTACATGTgatatttgtaatgaaaaatttacaaatcgaATCGATTTAAGGAAACATTTAATATTGCATCATGGAAATGAACCGTTTCAATgtGAAACAGACAGTGGTCTTGTAATTGATAAGGATAATGATGAAATCAATATGAAGGTCGAAGATCTGGATGCTGATGATTTCATCATTGAAAATAAGGGATATTTTCAGGATGATGTGAAAATGGAAATCGTAGAACATCCCGtgaaaattgaaaatgatgaaatataCGAGAATCAAGAATCGGTAGTagatgataaagaaaatatcaGTTTTGAACAGGAAAATGATAAAGGAGAAACACACTCGAAAGATAcgaaatataaatgtgaaatatgtggTGATAGTTTTCTTCTTCGACgacatttcaataaacatttaaaattacatgatGAACGTCTACttacatgtaatatttgtgacgAAGAGTTTCCACATAACAGTATTTTATTAGCACATTCAcgaacacatactggtgaaagaCCATTTGAATGTAAGaaaagtttcacaaataaagaatatttaaGGAGACATTTAAAATTGCATGATGAAAATCAACCGTATCAATGTAATGTTTGTCAAAAGAGATTTCCTTTAAAATATCGTTTAACTAAACATTCCAATGGTGTTCATGGtgagaaacaatttcaatgtaatgtttgtgataaaaaatttacacgTTTAGCTTCATTAAAAGAACATTCATTAATTCATGATGCTGGAAAACTAGtttgttgtaatATAACTAAAAATGATCGTTTTCCCAAGATAATATGCAATGATTGTTATGAAAAACTGAttaattcttataattttctGGAAATGGTTGCACGAGCTGATAAGCAATTTCAACAAGATCTTTATAATCAAACTGATAAGGATGGCTTTAATATAGAATTTGAAAGCAAAATCAAAGATGATCCTTTCGAAATTAATGCAAATGATAATAAGGCAATAGAAGgaaatgatgataacagtTCGAGTAACAGTATAGATGAAAATGATGAGTATCATTGCGAAACccaaataaatgataacaatgataatagttTAAATGATACAACTGATACTCATATTGATCAAAATAAAGAATTAGAAATGAACATTAACAAGCACACCATTACAATTGatgaaataACAGAAAGTGATAAGAATAATGATGAGATCGAAATAAAGGCTGCTGATACTGAATATCCGGGATTTCTCCAAGATGATGTGAAAATTTCAGATAAGActgaaactgataataatgaaattgaaataaagagCGAATATATGGATAATGAAACGACTACCGGtaatgaaatcaatgaaaatcaCAGATTTTATCACGTTGAtgtgaaaatagaaaatgtgGAACATCCCGTGAAAACTGaaaaaaataatgatttccCTGATAATCAAGAATCTGAAATAGACTCGGGAGACATTAAATATACATGTGAAACATGTGGTGAgtgttttgtttcaataaaattgttcaataaacatttacaACTACATAGTGGTGATAATATCGatgaaaaatcattgaaatgtTATCTTTGTGATAAACAATTGGCACATAACAGTTCATTACGACGACATTTAAtgacacatactggtgaaaaaccatttaattGTGAGATTTGTGATAAATGTTTTACAAGTAAATCGAATTTACAAACTCATCTATCAATTCATAATAAAGATGgacaatttatttgtgatatttgtaataagaGTTTCACAGATAAGGATTGTTTAAAGTGTCATTTGAAATTGCATAATGAATATAAACCGTTTCAATGTAATGTTTGTCAAAAGAGATTTCCATTAAAAggtcttttaaataaacattacaAAGTTCATGCtgagaaacaatttcaatgtaatgtttgtgataaaaaattcaaacgtATAGCtaatttaaaagaacattCATTAGttcataataatgaaagatCGTTTGGTTGTAatgtttgtggtaaaaaattttcaagacaTAATACTCTTAAACAACATTTAATATTACATACTGATAACGATCGATTCAAATGtaagatttgtaataaaagttatACACGTAAATATCATTTACAAAGACATTTAGTGGCTCATAGTGGTGAAAAACACTTAATGGCTCATAGTGGTGAGAAACCGTTTATgtgtgatatttgtaataaaagATTGTGTCATTTAGAAACATTTATGGGCTCTTCTAaacatgtatttttaaaacgtCCAGATGGTTTACAATTACTGCACATTATTACTGAAGTAACAAAGTTGCAAATAAACGAAAATGATCCATTTCCCAAGATAATATGCAATGATTGTCATGAAAAACTCATTAATTCTTataatttcgtaaaaattGTTGCACGAGCTGATAAGCAATTTCAACAAGATTTCTACAACAATATTGACAAGGATGgctttaatataaaatttgaaagcGAAATCGAAGATGATCCTCTCGAAATTAATGCAAATGATAAGGCAATAGAGGAAAATGATACAGATATCGATGAAAATGACGACAATCCTTGTGAAACAccaataaatgataacaatgatgaatttgataatgattttgaaatCAACATTGACAAGCACCCCATTAcaattggtaaatattaa
Protein Sequence
LDMEFDIKIEDDPVEINANDNSLEIKNEYLDDETTGNIINENQGYFHDDVKIEIVEHPVKTDFYNRTDKDSIDIMEFEIKREDDDPLAINANDNSSEIKNEYLDDETNTNNQAYFQDDVKIEIVEYPVKTENNEIDENQESLADPENEEKSSKKGKYKCEICGKCFVLRRYFNKHSKLHDKRPFTCNICDKEFARKYHLDRHLQTHTGERPFKCEVCDKGFKTTSNLKAHLLTHNKAKSFVCSVCNGRFPNENCLNKHSRLHSLNETFQSNSQFQQDFCDRTDKAGSDMEFEIKREDDPLEMNTNDDSSGSNSKTDNDDNDGIKIKNEDLDGEINETQVFYCDDVKIEIVEHPIEIENNENQDDGGNNQKETNSKDTKYKCETCGKCFVSRGYFKKHLQLHGINIDDEPITCNICGKVFTHSSSLGRHLRAHTGARPFKCEICGKTFQTRSNLNAHLSFHNKQKQYICEICNKSYTNNLYLKHHLKFHRENQPFQCTVCQKKFPLKGLLNQHFKVVHTEKQFQFHNNEKLFICDICGKEFARHSTLREHLIAHTGDKPFKCEICGKGFIRKSALNDHLSVHNDGKSSLTCDICNKTFSIKDETTDSDKNNDEIEIKDQDTENPGFLEDDVKIEIVEHPPKIDNDEIVVQEKHEVPDNEQINLKENKYKCETCGKCFVRKRFFNKHLQAHKEPLICNICGKEFSFKSKTYFTKHVQQHNNNNSNNNVECKICGKNVTETYYKAHLKLHSNDQPFVCNICNKRFKLKQRLVKHFETHSGERPFVCDICEKRYTNKCALTAHLKTHNPIKPFTCHICNKRWNRKDQLQKHLMTHTGAKPFKCDVCDKDFANQKSLKFHSTSHNDDKPFICEICNKRFPLKQKLTIHLKTHSGEKPFICDVCNKGFANGFGLRQHAVVHTKLKPFTCDTCKTQFTLKSNLVRHMVLHNKEKPFKCDVCNKDFPHKNVLKQHQTIHNKQVFTCNICDRQIVSKWHFKRHLMVHSGQLSYDCKICNKKLASSCWLRLHMKLHLDEKPFKCNICNKDFAHKTLLNIHLSKHTVKKEIFTCKICNKKVTSKWYYQQHLMAHRGELPTYECKICNKKLTSRKSLNLHLKLHTDDKPFKCNQCDKRFQHRTLLKRHSRYHNTEIITCKICNRKISNKWSYNRHLQLHNHCRKSFKCDDCGKKFVTKDGWQHHTNFPKMVSQATSQFQQDFYNQTDKDSLDMEFKIKPEYDPFEINANDNDSSGSDSKTDNDNDGIKIKTEYLVDETTDNIMHQIQGYFQDDVKMEIEEHLVKTVHNNEQLFVCNVCDKEFARHSALKEHLMTHTGDKPFKCEICGKGFIRQTNLNDHLLLHNGEKSPITCDICNEKFTNRIDLRKHLILHHGNEPFQCETDSGLVIDKDNDEINMKVEDLDADDFIIENKGYFQDDVKMEIVEHPVKIENDEIYENQESVVDDKENISFEQENDKGETHSKDTKYKCEICGDSFLLRRHFNKHLKLHDERLLTCNICDEEFPHNSILLAHSRTHTGERPFECKKSFTNKEYLRRHLKLHDENQPYQCNVCQKRFPLKYRLTKHSNGVHGEKQFQCNVCDKKFTRLASLKEHSLIHDAGKLVCCNITKNDRFPKIICNDCYEKLINSYNFLEMVARADKQFQQDLYNQTDKDGFNIEFESKIKDDPFEINANDNKAIEGNDDNSSSNSIDENDEYHCETQINDNNDNSLNDTTDTHIDQNKELEMNINKHTITIDEITESDKNNDEIEIKAADTEYPGFLQDDVKISDKTETDNNEIEIKSEYMDNETTTGNEINENHRFYHVDVKIENVEHPVKTEKNNDFPDNQESEIDSGDIKYTCETCGECFVSIKLFNKHLQLHSGDNIDEKSLKCYLCDKQLAHNSSLRRHLMTHTGEKPFNCEICDKCFTSKSNLQTHLSIHNKDGQFICDICNKSFTDKDCLKCHLKLHNEYKPFQCNVCQKRFPLKGLLNKHYKVHAEKQFQCNVCDKKFKRIANLKEHSLVHNNERSFGCNVCGKKFSRHNTLKQHLILHTDNDRFKCKICNKSYTRKYHLQRHLVAHSGEKHLMAHSGEKPFMCDICNKRLCHLETFMGSSKHVFLKRPDGLQLLHIITEVTKLQINENDPFPKIICNDCHEKLINSYNFVKIVARADKQFQQDFYNNIDKDGFNIKFESEIEDDPLEINANDKAIEENDTDIDENDDNPCETPINDNNDEFDNDFEINIDKHPITIGKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-