Ipal004037.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Iselma pallidipennis
Gene Symbol
-
Assembly
GCA_037464855.1
Location
JAZBHA010000280.1:42560-57098[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 51 0.22 9.5 6.6 2.3 2 23 13 35 12 35 0.95
2 51 0.0002 0.0087 16.1 5.9 3 23 44 64 43 64 0.99
3 51 0.00051 0.022 14.9 3.5 1 23 74 97 74 97 0.98
4 51 0.00036 0.015 15.4 0.2 1 23 104 126 104 126 0.98
5 51 1.8e-05 0.00078 19.4 1.8 2 23 133 154 133 154 0.97
6 51 1.5e-06 6.5e-05 22.8 1.5 1 23 160 182 160 182 0.97
7 51 0.0011 0.048 13.8 1.2 2 23 198 219 197 219 0.97
8 51 4.3e-05 0.0019 18.3 0.8 1 23 225 247 225 247 0.95
9 51 0.00039 0.017 15.2 2.5 2 23 263 284 262 284 0.94
10 51 6.2e-05 0.0027 17.8 0.5 1 23 290 312 290 312 0.96
11 51 0.0024 0.1 12.8 7.7 1 23 318 340 318 340 0.96
12 51 1.5e-05 0.00064 19.7 1.0 1 23 346 369 346 369 0.96
13 51 0.0013 0.058 13.6 0.3 3 23 376 396 375 396 0.99
14 51 7.7e-05 0.0033 17.4 3.1 1 23 406 429 406 429 0.97
15 51 9.8e-06 0.00043 20.3 0.2 1 23 436 458 436 458 0.98
16 51 1.3e-06 5.8e-05 23.0 0.1 2 23 465 486 465 486 0.97
17 51 1.5 66 3.9 0.1 1 10 492 501 492 505 0.88
18 51 0.00039 0.017 15.2 2.5 2 23 511 532 510 532 0.94
19 51 9.8e-06 0.00043 20.3 0.2 1 23 538 560 538 560 0.97
20 51 0.0085 0.37 11.0 7.4 1 23 566 588 566 588 0.96
21 51 4.4e-05 0.0019 18.2 1.4 1 23 594 617 594 617 0.96
22 51 0.0023 0.099 12.8 0.8 3 23 623 643 622 643 0.99
23 51 5.3e-05 0.0023 18.0 1.1 1 23 653 676 653 676 0.97
24 51 8.7e-06 0.00038 20.4 0.2 1 23 683 705 683 705 0.97
25 51 1.3e-07 5.8e-06 26.1 0.9 2 23 712 733 712 733 0.98
26 51 3.3e-05 0.0014 18.6 3.8 1 23 739 761 739 761 0.98
27 51 0.0087 0.38 11.0 0.3 1 17 767 783 767 784 0.93
28 51 0.00011 0.0047 17.0 1.4 2 23 808 829 807 829 0.96
29 51 0.0042 0.18 12.0 2.7 1 21 835 855 835 856 0.94
30 51 0.0062 0.27 11.5 8.1 1 23 863 885 863 885 0.97
31 51 0.0027 0.12 12.6 2.1 2 23 892 913 891 913 0.97
32 51 0.0034 0.15 12.3 1.1 3 23 922 942 921 942 0.99
33 51 0.0007 0.03 14.4 7.7 1 23 952 975 952 975 0.96
34 51 0.0022 0.097 12.9 0.1 1 23 982 1004 982 1004 0.97
35 51 8.6e-07 3.7e-05 23.6 0.5 2 23 1011 1032 1011 1032 0.97
36 51 4.3e-06 0.00019 21.4 2.5 3 23 1040 1060 1038 1060 0.97
37 51 0.0054 0.23 11.7 8.3 1 23 1076 1098 1076 1098 0.97
38 51 0.00051 0.022 14.9 5.4 1 23 1102 1125 1102 1125 0.98
39 51 0.16 6.8 7.1 3.5 1 23 1132 1154 1132 1154 0.97
40 51 1.3e-06 5.8e-05 23.0 2.0 2 23 1161 1182 1161 1182 0.98
41 51 1.5e-07 6.4e-06 26.0 2.1 1 23 1188 1210 1188 1210 0.98
42 51 1.2 50 4.3 1.5 1 15 1220 1234 1220 1237 0.89
43 51 7.8e-05 0.0034 17.4 0.8 2 23 1255 1276 1254 1276 0.96
44 51 0.00078 0.034 14.3 0.9 1 21 1282 1302 1282 1303 0.95
45 51 0.0053 0.23 11.7 5.4 1 23 1310 1332 1310 1332 0.97
46 51 3.3 1.4e+02 2.9 2.8 12 23 1341 1352 1340 1352 0.92
47 51 0.0027 0.12 12.6 4.9 1 23 1362 1385 1362 1385 0.97
48 51 0.0017 0.074 13.2 0.1 1 23 1392 1414 1392 1414 0.98
49 51 2.3e-07 9.9e-06 25.4 0.6 2 23 1421 1442 1421 1442 0.97
50 51 1.9e-07 8.4e-06 25.6 1.4 1 23 1448 1470 1448 1470 0.98
51 51 8.1e-05 0.0035 17.4 2.8 1 23 1476 1499 1476 1499 0.97

Sequence Information

Coding Sequence
ATGCATCATCGACGTCATTTAAAAGACTATAAAGTCACTTGCCAAATGTGCGGCCACGGTTGTATGTCGTATGGTGAATTGAAACAACATGTTGagaaaaaacattataaaGATGATGCGGCTGGTCTTTGCAATATTTGTGGACAATCGTTTCACagtaaacaatatttaaagcACCATATGAAACGACATGAAGAGAACTATACCGAGAAACGTGACTATAAATGTCAATATTGTACGAAGACGTTTCTTCAATTGGgctatttacaaaaacatacGAGACGAATGCATAATGATAATCGTCGCAGATATATCTGTGATATTTGTAACAAGGAATTGGCCAGTGCTTATAGTTTACGTTTACACAAGAATACTCATGAAGGTGTAAAGCCGAATGAGTGTAGTTTTTGTGAGAAGAAATTCGCTCGAAAAGCACATTTGGTGGAACATATTCGAACACATTCCGGTGAGAAACCGTTCAATTGTACTATCTGTGGCAAATCATTTTCGCAAAGAACTCCATTGAAGAATCATTTGAGGCAACATACAGGCGAAAAACCGAGTGTAGATGGCACACAAAGACAATCGCTAGAATGTCCACATTGTTCGAAAATCCTGGAAACAAAACGTGCATTTAAGAGTCATATATTGACTCATACCGACGTTCGACCATATGTATGTGATATATGTGGAAGAGCTTTCAAATTGAAAGGTACATTAAAGAAGCATAAATATCTCCATGATAATACTGTAAGgAGTAAGGAAGTCAACAGAAGGAAACCACAACAGTGCCCACATTgtccaaaaatctgtaaagaCAAACGTGCATTGACCAAACATCTAGTGGCTCATACTGATAATCGACCCTTTCCATGTGAAATATGTGGGAAAGCCTTCAAACTAAAATTCTCATTAACGGTGCATAAATATGTGCATGATGACACTCCAAGGCATGAATGCAATATCTGTCATAAAAAATTCAGTAGTCCTTACTCCTTCCAAGCTCATTGTCGATCTCATCGGCAACCAAGCAAATTCACTTGTGAAATATGTGGACGTAGTTACAAACttaattctaaattgaaaCAGCATATACAACTGTCACATAACAAATCGACACTTCTTTGTAATGTTTGTGGTcaattattgagaaataaaAAAGGTTTAATACAGCACATGAGAATACATGAAGAAAACTACACTGAAAAACGTGACTTTAAATGTCAATATTGTACAAAAGCATTTATGCAACTAATGCATCTACAAAAACACATAAAACTTGTTCATAATGCCAATCGTCCTAAATACgtttgtgatatttgtggtAAGGAGTTTACCGTTCCTCGTAgtttaaaattacacaaaaacatTCACGAAGGTGTCAAACCTAatgaatgtaatatttgtggtaaaaaatttGCTCGAAAAGGATACTTAGTTGAACATATCCGAATACATTCCGGTGAGAAACCTTACAGTTGTAGTATTTGTGGCAGATCgagTAAAGAGATCAGCAGAAGAAAACCACAACAGTGTCCACATTgtccaaaaatctgtaaagaTAAACGTGCATTAACTAAACATTTAGTGGCCCATACCGATGATCGACCGTATCCATGTGAAATATGTGGGaaagcttttaaaataaaatccacATTAAACGTGCACAGATACGTTCATGATAACACCCCAAGGCATGAATGTAATATCTGTCATAAACAATTCAGTAGTCCTTATGCCTTTCAAACGCATTGTCGATCTCATCGGCAACCAAGCAAATTCACTTGTGAAACATGTGGACGTAGTTATAAACTTAATTATCTATTGAAAAAGCATATACAACTGTCACATAACAAATCGATActgtgtaatatttgtggtcAATTATTGTACAGCCAAAAAAGTTTAACATATCATATGAGAAGACATGAAGAAAACTACACTGAAAAACGTGACTTTAAATGTCAGTACTGTACAAAAGCATTTATGCAACTAATAAATCTACAAAGCCACATAAAACAAGTTCATAATGGTAATCGTCCTAAATACGCTTGTGATATTTGTGGCAAAGAATTTACCACTCGTCCTAGTTTAAGATTACATAAAAACATTCATGAAGGTGTGAAACCTAatgaatgtaatatttgtggtaaaagaTTTTCTAGAAAAGAGACCTTGGTCCAACATATTCGAACACATTCCGGTGAGAAACCattcaaatgtaatatttgtggcaAATCGTTCTCCCAAAAAACTCCATTGAATTGTCACATGCGACAACATACGGGAGAAAAGCCATATTCGTGTGATGTTTGTCAAAAAGAATTCGTGAATAAAAGTACTCTgGCTAAAAAATCAAAGAGAAGAAGGCGACCAGTATATAGCAATGTGAAACCATCAAGAACACACCAAGAATCGACGCCATGTACGTATTgtccaaaaatctgtaacgaTAAATACCTGTTGAAAAAACATCTACTTGTCCATACTGAACATCGACCATACTCGTGCGAAATATGCAAGAAATCATTCAAAGCGAAATTCTCACTTGACAGACATAAATGTGTTTTTGATGATACCGTCAAGCATGAATGTAATATTTGCCATAAAAAACTCAGTAGCTATCACAATTTAAAAGAGCATCGCCAGCGTCATTTAAAAAAGTTCAAAGTTACTTGCGAAATATGCGGACATGGTTGTATGTCAAATGCAGAACTCACAAGGCACACCAATAGACATAATAAAGCTATATTATCTGTTCTTTGTACCATCTGTGGTCAGTTATTTTACAGTAACcagattttgaaaaaacacaTGAGGAGACACGAAGAAAATTACACTGAAAAGCGTGATTTCAAATGTAAACACTGTACGAAAACATTTATGCAACTAGAACATTTACAGAAACATACAACAAGGATGCATAATGACAATCGTCGTAAAtatatttgtgatatttgtaacAAAGAACTAGCGAGTGCTTATGGTTTACGGTTACACAAAAATATCCATGATGGTATCAAACCGAATGAATGTAGTTTTTGTGGTAAAACATTCACTAGAAAAGATTATTTAGTCGAACATATTCGAATACATTCCGGTGAGAAACCTTACggttgtaatatttgtggcaAATCGTTTACCCAAAAAACTCCATTAAGACATCACATGAAACAACATACAGGCGAAAAGCAgcataaatgtatttttgatGATACCGTCAAACATGagtgtaatatttgtcatAGAAAACTCAGTACTTATCACAATTTACAAAAGCATCGCCTGCGACATTTAAAACAGTTCAAATGTGAATTTTGCAAGAAAACATTTATGCAGTTGGTGCATTTACAAAACCACAGGAAAAGAATGCATGATGATAATCGTCGTAAATACGTTTGTGATATTTGCAACAGAGAACTAACGAGTGCTCATAGTTTACGATGCCATAAAAATAGTCATAAAGGTATAAAACCGAATGAATGTAGTATTTGTGAGAAAAAATTCGCCCAAAAATCACATTTGATGGATCATATTCGAACGCATTCCGGTGAGAAACCTTACAGTTGTACTATTTGTAGCAAGTCGTTTACACAACGATCTTCATTAAGAGATCATATGAGGCTACATACTAGAGAACATACAGAAGAAAAACCTTATTCGTGTGACATTTGCCACTTACAATTCTCCTATAAAAAGTCtaagaaaacaacaagaaaatcgaAACGTCGAGGAAAAAAACCAAGAGCTAAACAACCTGTACAATGTCCATATTgtccaaaaatctgtaacgaCAAACGTTTATTGAAAAGACATTTGATCGCTCATACTGATCATCGACCCTATTCATGTGAGATTTGCCTAAAATCATATAAACGAAAGGGTGCACTAAATGACCATAGATGTGTTTCTGACAATGCCGTAAAGCATGAATGCAATATTTGCCATAGAAAACTAAGTAGTTATGATAGTTTAAAAACGCATCGTTTGCGACATTTAAAACGATTCAAGTTCATGCAAAGTAAAGAGAATTTGAAACATCATATGAAAAGGCATGAAGAAGACTATACTAAAAAGCGTTACTTTTACTGTCAATATTGTACAAAACAATTTATGCAGTTGATCCATTTACAAAGCCATACGAGAAGAATGCATAACGATAATCGTCGTAAATACGTTTGTGGCGTTTGTAATAAAGAGTTAGCCAGTGCTTATGGTTTACGGTTACACAAAAATACCCATGACGGTGTTAAACCGAATGAATGTAGTTTTTGTGGTAAAACATTCACTCGAAAAGATAATTTGGTCGAACATATTCGAATACATTCCGGTGAGAAACCTTAcagttgtaatatttgtggcaAATCGTTTTCGCAACGAACTCCATTGAGAACTCATATGAGACAACATACAGGAGAAAAGCCTTATTCTTGTGATATTTGTCAAGAGAAATTCACTCATCAGAGTACGCTTTCTATTCATTTGAAGAATAAACACTAA
Protein Sequence
MHHRRHLKDYKVTCQMCGHGCMSYGELKQHVEKKHYKDDAAGLCNICGQSFHSKQYLKHHMKRHEENYTEKRDYKCQYCTKTFLQLGYLQKHTRRMHNDNRRRYICDICNKELASAYSLRLHKNTHEGVKPNECSFCEKKFARKAHLVEHIRTHSGEKPFNCTICGKSFSQRTPLKNHLRQHTGEKPSVDGTQRQSLECPHCSKILETKRAFKSHILTHTDVRPYVCDICGRAFKLKGTLKKHKYLHDNTVRSKEVNRRKPQQCPHCPKICKDKRALTKHLVAHTDNRPFPCEICGKAFKLKFSLTVHKYVHDDTPRHECNICHKKFSSPYSFQAHCRSHRQPSKFTCEICGRSYKLNSKLKQHIQLSHNKSTLLCNVCGQLLRNKKGLIQHMRIHEENYTEKRDFKCQYCTKAFMQLMHLQKHIKLVHNANRPKYVCDICGKEFTVPRSLKLHKNIHEGVKPNECNICGKKFARKGYLVEHIRIHSGEKPYSCSICGRSSKEISRRKPQQCPHCPKICKDKRALTKHLVAHTDDRPYPCEICGKAFKIKSTLNVHRYVHDNTPRHECNICHKQFSSPYAFQTHCRSHRQPSKFTCETCGRSYKLNYLLKKHIQLSHNKSILCNICGQLLYSQKSLTYHMRRHEENYTEKRDFKCQYCTKAFMQLINLQSHIKQVHNGNRPKYACDICGKEFTTRPSLRLHKNIHEGVKPNECNICGKRFSRKETLVQHIRTHSGEKPFKCNICGKSFSQKTPLNCHMRQHTGEKPYSCDVCQKEFVNKSTLAKKSKRRRRPVYSNVKPSRTHQESTPCTYCPKICNDKYLLKKHLLVHTEHRPYSCEICKKSFKAKFSLDRHKCVFDDTVKHECNICHKKLSSYHNLKEHRQRHLKKFKVTCEICGHGCMSNAELTRHTNRHNKAILSVLCTICGQLFYSNQILKKHMRRHEENYTEKRDFKCKHCTKTFMQLEHLQKHTTRMHNDNRRKYICDICNKELASAYGLRLHKNIHDGIKPNECSFCGKTFTRKDYLVEHIRIHSGEKPYGCNICGKSFTQKTPLRHHMKQHTGEKQHKCIFDDTVKHECNICHRKLSTYHNLQKHRLRHLKQFKCEFCKKTFMQLVHLQNHRKRMHDDNRRKYVCDICNRELTSAHSLRCHKNSHKGIKPNECSICEKKFAQKSHLMDHIRTHSGEKPYSCTICSKSFTQRSSLRDHMRLHTREHTEEKPYSCDICHLQFSYKKSKKTTRKSKRRGKKPRAKQPVQCPYCPKICNDKRLLKRHLIAHTDHRPYSCEICLKSYKRKGALNDHRCVSDNAVKHECNICHRKLSSYDSLKTHRLRHLKRFKFMQSKENLKHHMKRHEEDYTKKRYFYCQYCTKQFMQLIHLQSHTRRMHNDNRRKYVCGVCNKELASAYGLRLHKNTHDGVKPNECSFCGKTFTRKDNLVEHIRIHSGEKPYSCNICGKSFSQRTPLRTHMRQHTGEKPYSCDICQEKFTHQSTLSIHLKNKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-