Ipal012204.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010003179.1:546-2366[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-10 3.1e-07 29.7 0.0 3 43 16 56 14 58 0.90 2 2 0.9 1.2e+03 -1.0 0.0 32 44 128 141 127 142 0.87
Sequence Information
- Coding Sequence
- ATGCCTCGTAGTAAGAGTAATACCAAGAAAGTAAAACCTAGTAAAGAAAACGTTGATTTGGCTGTAAAATCAATCCTGGAGGGACGTTTATCAATCAGAAAAGCTGCGGGTGTatataaattatctaaaagTTTGTTAGCCCGTCATGTCAAGAAGCATAAAGAGTCAGGAAACAAAGCATTCTCCTACGAAGCTCGCAACGATGTTAAACGAGTTTTTTCAGATAACGAAGAAGATCAGCTCGTTGAGTATTGCATTAAAGCTAGCAAATTCCACTATGGTCTTTCAAAGCAAGTTTTCCTAAAACTAGCCTATGAATACGCCGcgtttttaaagaaaaagtatCCACATTCTTGGGATAGGGATAAGAGTGCTGGTAAAAccttttatgattattttattaagcGACATCCAAATTTAAGTTTACGAAAACCCGAAGCTACGAGTTTAGCCCGTTCAACAGCATTCAATAAAGCAAACAGTGAAGGTTCAGGTGACGACGATGCTacagaaaatatttgtttaggCTGTGGTGAAGAttacaataattctaaaaCGTTTGAAGATTGGATTCAATGTCTTGTTTGCAAATTTTGGGTGCATGAAGGTTGTACTGCTTTTGAAGATCGTTGCCAAAAATGTGGTagcaattaa
- Protein Sequence
- MPRSKSNTKKVKPSKENVDLAVKSILEGRLSIRKAAGVYKLSKSLLARHVKKHKESGNKAFSYEARNDVKRVFSDNEEDQLVEYCIKASKFHYGLSKQVFLKLAYEYAAFLKKKYPHSWDRDKSAGKTFYDYFIKRHPNLSLRKPEATSLARSTAFNKANSEGSGDDDATENICLGCGEDYNNSKTFEDWIQCLVCKFWVHEGCTAFEDRCQKCGSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -