Ipal003871.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- bab2
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000266.1:16591-21298[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-16 6e-13 47.9 0.0 2 42 395 436 394 439 0.95
Sequence Information
- Coding Sequence
- ATGACCATGCAACAATATTGTTTACGTTGGAATAACCATCAGCCAAATTTCATTTCTGTATTTTCTAGTCTATTAAATAGTGAATCATTAGTGGATGTTACTTTGGCTGCTGAAGGTAGACATCTACAAGCACATAAAGTCGTATTATCAGCATGTAGTTCATATTTTCAATCATTATTTACTGTAAATCCCTGTCAACATCCCATTGTTATACTAAAAGATGTCAAATTTGCCGATTTAAAAGTTATGGTAGATTTTATGTATTATGGTGAAGTGAATGTGTCACAGGAACAACTTCCACATATACTCAAAACAGcagaaatgttaaaaattaaagGTTTGGCAGAGATTCCTGTAGATCAATCGGTTGCCAAAGCACAAAATAGTTCATCAGATAAAGCTGAATTATTGACACCGGGTGATTCAAATTGGAGTTCAGATGGAGGTCCACGACaatcattatcaccatcacCTTGTCCTCTATCGCCAAGCAGTAAAAGaaaaagattGAGAAAATCATCAACTGGTTCCGGTTCTGGTTCCACTGAACGTACTTCCGATGACCATCAATCCAGTGAAGTAACACTAACATCATCAACTGGTAGTGTTTTAGGTACAGTGATTAAATCGGATCCTGGTGGTTATGCTTCCGATAGTAGTagtattttacataaaagtaAACAACATAGTAGTGACTCAGAATTACAACGTGGTAGTTCACATGAAAGTGTTGAAGGTGAAATGCATCAAGTTACactgCAAGTCCCTCAAGATGTTAGTGTACAACACAATTTAGAAAGTACGACAAGTACTGTAGAAGTGGCCGGTCCATCAACTTCTTCCACATCACAACTAACACTAACTGGCATGCAATGGAATGTCATGGATCATACAGCCTACGCTCAATTCACATCGTGTACATCACCCCCAGCAACTACATTACCCccaaatcaacaatataataataataataataataacaataacaataataataatagtaataataatcatcatcacaatcatcatcatcatcaatgtCCACCAAATATTGTCCAAACgaatccaccaccaccatcaccatcaccatcaccaaaTACGATTCATTGTTATCagaatcaaataaatcattcaCCACCACAAATGATGCATAAAAGGAAACGTAGTATCAATCCACAAGGTGATGAGAATTTTATACGAGCATTAGATGCTGTTCGATTTGGTGGTATTGGTTTTTGTAAAGCAGCACGTATGTATGGTGTCAATAATCGAACATTATGGTTAGAATATAAGAAACGTGGCTATCCGAATTTTCGTTTAAGtattaaaaatcgaaaacagGAGACTATCCATcaaccaccaccgccaccaccacctccaccacaacaacaccaacaaagatcaattgataataatagtaataatcatcaatcaacatcatcatcatcatcaacaacagcaccaccaacaacaacaacatctagTCCATCATCACATTCAGAacatgttgaaaataaaaatgatacagATGGTAATATGTGCCCACCACCGCCGACAAATCATCCAGTTGCTTTGATTAGTAGTGCTTTTTTCGATGGTAAACATGTTGATCTAGGCACGGTATTACAAAGACCGAAATATTTAGATGGTGCCGTCATTAATACACCACAAGaaaaatcaccaacattaacatcaacatcaacaacaacaacagtaacaacaactcAAGCGCAATTCTCATCACAACGAACACAACAATTAGTAATGGGTACGAAACGTGGACGATTTTTAATGCGCCAGCCACGTGTAAAACGTGAAAGTGATCCCTGTCATACATCCGATAATGATCCATTATCACCACAATATTTATCAGTACCACCAATTAAAGTTGAACGACAATGTTCGGAACCATTACCAACAacattatcaccaccacctggcaatttattaacaataccCGGTGCCGTTCTAGTTAAACAACATTCACATCCCTTATTGCCCAGTCAAACACAACAACCGTTATCACCACCACTTCATATACAATTGTTACCACAAACTGACACTTCAACatctacaacaataacaacagcagcCGAACGTGCCATTAGTCCAATAGCTATTGCCCAAGATCCATTGGCTGTATCAACATCGGAAGTTCCTCTAAGGGCGGATAGTGCAACACCGACAACACTCAGGGCTAAAACAGATGAATTAAAACGAAGTACTTCATCACCACAGACTGGTACCAGTAGATCAAGTCATTGTCCGGTAGTTCGACCAGGTCCGGCATTGggttgtaattattgttggaaTACCGTAGATAATCATGGTAGAATATTACGACGTAAAACTAAATACCATTGTCCAGAATGTCATACGAATTTATGTATAGTACCATGTTTCCAAGAATACCATGAAAGACATGTTAGTAGTAATGCAAGTCAAACTGATCCAGTTGCATTAACAACTTCTGTAATGCGTGTATTCCCAAAGACAACATCAATGTGA
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTVNPCQHPIVILKDVKFADLKVMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEIPVDQSVAKAQNSSSDKAELLTPGDSNWSSDGGPRQSLSPSPCPLSPSSKRKRLRKSSTGSGSGSTERTSDDHQSSEVTLTSSTGSVLGTVIKSDPGGYASDSSSILHKSKQHSSDSELQRGSSHESVEGEMHQVTLQVPQDVSVQHNLESTTSTVEVAGPSTSSTSQLTLTGMQWNVMDHTAYAQFTSCTSPPATTLPPNQQYNNNNNNNNNNNNNSNNNHHHNHHHHQCPPNIVQTNPPPPSPSPSPNTIHCYQNQINHSPPQMMHKRKRSINPQGDENFIRALDAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPNFRLSIKNRKQETIHQPPPPPPPPPQQHQQRSIDNNSNNHQSTSSSSSTTAPPTTTTSSPSSHSEHVENKNDTDGNMCPPPPTNHPVALISSAFFDGKHVDLGTVLQRPKYLDGAVINTPQEKSPTLTSTSTTTTVTTTQAQFSSQRTQQLVMGTKRGRFLMRQPRVKRESDPCHTSDNDPLSPQYLSVPPIKVERQCSEPLPTTLSPPPGNLLTIPGAVLVKQHSHPLLPSQTQQPLSPPLHIQLLPQTDTSTSTTITTAAERAISPIAIAQDPLAVSTSEVPLRADSATPTTLRAKTDELKRSTSSPQTGTSRSSHCPVVRPGPALGCNYCWNTVDNHGRILRRKTKYHCPECHTNLCIVPCFQEYHERHVSSNASQTDPVALTTSVMRVFPKTTSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841951;
- 90% Identity
- iTF_00841951;
- 80% Identity
- iTF_00841951;