Iinq010177.1
Basic Information
- Insect
- Ischnus inquisitorius
- Gene Symbol
- -
- Assembly
- GCA_963924025.1
- Location
- OZ001249.1:7246109-7250517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0059 0.49 11.2 0.9 2 23 573 595 573 595 0.94 2 8 6.1e-06 0.0005 20.6 2.6 2 23 614 636 613 636 0.95 3 8 5.3e-05 0.0044 17.6 3.4 1 23 659 681 659 681 0.98 4 8 1.9e-05 0.0016 19.0 2.2 2 23 687 708 686 708 0.96 5 8 0.00086 0.071 13.8 6.5 1 23 714 736 714 736 0.98 6 8 0.00026 0.021 15.5 3.5 1 23 742 764 742 764 0.97 7 8 1.1e-05 0.00088 19.9 2.7 1 23 770 792 770 792 0.98 8 8 0.017 1.5 9.7 3.8 1 20 798 817 798 819 0.93
Sequence Information
- Coding Sequence
- ATGTGCGCTCGATTACTCTCCTGTCCGCTGTGTTCTCAACCTGGTTTCGTGACTCTCGACTCGCTGCGAGCCGGACTCGTGAGCGTAGCCACAAGACCACTGGCTTGCCCCGTCTGCAACGAGACTCTCCTCGGTATCGACAAACTCACGATTCATCTCTTCGGACACACGATAAATGCAAACAATCGAGCGGAACACAAGATTACAGATATCAATTGCAACAACAGCGTTCGACTAGTTTCCCACAACGGAGCGATGATCCTACCGCAGAACTGGAATTCGCAGAATACTCAGACAATCTTGTCGAATCGGTCTCGAAACGTCGATGTCAGCTGCGACGATACCTTTCCTCCGTTGTCTGCGCTCATCGTCAACAAAGATTTGAAAAGATTGAATTCGCAATGCTGCGACGCCTCCCAGACGGAGAAGAGTCGTATGATGTTTTTGCAGAATTCGAGCCAACAAGAATTTCGCTCGCCAAGATTGATCAAAGACGATTCGATGCCAAATTCCTGTGATGTAGAAGCAGGCAGAAGAAACGCAGTGTCTATGGTATTTCGAAGTACAGAAGGGAACCAGAGGATAGCTTCTGTGccttcgaaaatattccagAATTCTGCTCACGCTTCGACGCAAAATCCATCCGACAGGGAGTCGTACAGAAGAAACGCAGTGCCTATGGTATTCCAAAGTGCagaagcgaacgagaggaTAGCTTCGACGTCTTCGAAAGTTTGCCAGAATTCTGCGCAAACTGCGATGCAAAATTTATCTGACGAAAATGCGTACAAAAGAAACGCAGTGCCTATGGTGCTTCGCAGTACagaagagaacgaaagggTAGCTTCGATGTCCTTAAAAGTTTGCCAAAATTCTGCGCAAACCTCAATGCAAAACTTATCCGACGAAGATGCTTACAGAAGAAACGCAGCGTCTGTAGTATTTCCAAATTCCGAAGAGAGCGAAAGGACAGCTTCGACGTCTGCAAAAATTTGCCAAAGCTCTGCGCAGACCTCAATGCAAAATTTATCTGAGGGAGAGATTTATAATCGAAACACAATGCCTATGGTATTCCGCAGCACTGAAGATAACGAGAGGATAGCTGCGATGTCTTCGAAAATTTGCCAAAACACTGCGCAAATTTCATCGATGACAAATTCTTTGGAGAGAAATGCTTACGGAAGAAAGGCAGTCCCTATGGTATTTGAGACCccggaagaagaagaaagaatggCTCTGATATCTTCGAAGATTTCTCAACAGAGTTCTGCGCAGTCGCCTGGATCGTCGAAGGCAGCAATTTACCAAATTGAAGCtaacgaagaaaatacgaagagcAGTGAAGCGAGCGCAAAGGAAGAAGCTGCAGCGCAGTTTTCGGGGTCTTGGATAGAAGATTTGTTACAAGAGAACGGTGCAAAGTGTTCCGACGACGGAGCTTCGAAGAGCGAAGCGAAGAATCATGACTCTTCGGAGAAAGCTTTGAATTTGCAGAATGGCGTGGAAGAGTATTCGGAGTATCGAACGAGTACTTCGATAACAAGCGCTAAAAATGAACTCATCGGAGAACCAAAAAATCTTCTCGACTCGACCGATTCCAGTGTTTGCAGAACGGATGAGATAATAAACGTTAATCAGCGCTCCAGTCCGAATTGCAAGGAAGTTTTGCCGAAATGGAAAGCTTTTCGTCTCCTCGCGATGAAGGACAAGACCGAACGTTGCAACATATGCGGCACACATTTTCCGGATCGTAATTTTTTAGTTTTGCACAAGCAACTGGCTCACATGATTCCTGAGAAAGATGTCAACGCGACGCCCGAGGAACTTTTGAAGAATTGCCCGTGCCATTTGTGCACGAAGGTATTCAAGACGAGGGGCACGCTGATGGTTCACATGCGAGTCGCCCATATGGGATACAATCTTGGATTTCTTTCCAAGGCCAAAGAAAGCGAAATGTCCTGTTGCGAGAATGGTTTCAACTGTCCGACATGTGGAAAAAACTTCAGAAAGGAGCAACACGTGACCCAACATCTGAAGACGCACGAGGGAAAGCAATGGGAATGCGACGTTTGCAGCAAAATGTTCACGACAAAGTATTTCCTGAAGAAGCACAAGCGTCTGCATTCCGGCGAGATGCCGTACAAATGTACGATATGCGAGAAGACTTTCACCTTCCAGCAATCTTATCACAAGCACAGATTGTATCACAAGGACGACAAGCCGCACACTTGCGCGACGTGCGGCAGATCGTTCAAGGAATTGTCGACTCTTCACAATCACGAGCGAATACACACCGGCGAGAAACCCTTCGTTTGCGAGACTTGCGGCAAATGCTTTCGTCAACGAGTCTCCTATTTGGTTCACCGTCGGATTCACACGGGCGTCATGCCTTACAAATGCACAGCGTGCGGAAAAAGTTTTCGTTacaaaGTGAGTCAGAGAACCCACAAGTGCCAAGCCCAACCGGAAGATTCGAGTCCCGGCTTGGCGGAAGCTTCCTCGCCGAGTCACCAGCAGCAGAGTCGTCGTTCGGATGCTGTCGCGTCGGAGAATGGGATTTTGTTGCAGAGCCAAGCGGCGACGGAGCTCGCGCCTAGCGAGAACAACAAATTTATCCTCATCGTGAACACCCACGGTCAGCCGATACTGACGCGAGAAGCCGATGTCCGAGCGACGAGTAATTTTCTCAAAGAGAAGCAAACTTCGCAGTCCCAGAGCCGAGTCGAACGCGACGAGAATTCCGTTGACGATCGGAATCTCTGGAACGATCGCGGATTGCCGACGGAGAGCGTGACCGAAGAATGCGGAGCTTCGCCGTCTCGAGAGAGCAATGCGAACGACAAACAGCGAACCGACGAAGcgaacgactttttttccctGGTGATGTCACCGTTGGAGAACGATTTgtcgtcgccgtcgacggAGATGGAGCATCTGCGTCTCGAATCGCCGGGAAACGAGGAAACCCGACCGAGCGAATCGCGAGAGGCCGCGAACAGCGCCAACAGTCTTCAGAGAGACTTGAACAATGCCATCGACGGAATATTCAGGAACAATCGCTCGGGCAACAGCCCCCTCGAGACGATCAACGAGGAGTCCTTGAAACAGTTGCTCTACGgtatcgatcgaaagaatcTGGAATGA
- Protein Sequence
- MCARLLSCPLCSQPGFVTLDSLRAGLVSVATRPLACPVCNETLLGIDKLTIHLFGHTINANNRAEHKITDINCNNSVRLVSHNGAMILPQNWNSQNTQTILSNRSRNVDVSCDDTFPPLSALIVNKDLKRLNSQCCDASQTEKSRMMFLQNSSQQEFRSPRLIKDDSMPNSCDVEAGRRNAVSMVFRSTEGNQRIASVPSKIFQNSAHASTQNPSDRESYRRNAVPMVFQSAEANERIASTSSKVCQNSAQTAMQNLSDENAYKRNAVPMVLRSTEENERVASMSLKVCQNSAQTSMQNLSDEDAYRRNAASVVFPNSEESERTASTSAKICQSSAQTSMQNLSEGEIYNRNTMPMVFRSTEDNERIAAMSSKICQNTAQISSMTNSLERNAYGRKAVPMVFETPEEEERMALISSKISQQSSAQSPGSSKAAIYQIEANEENTKSSEASAKEEAAAQFSGSWIEDLLQENGAKCSDDGASKSEAKNHDSSEKALNLQNGVEEYSEYRTSTSITSAKNELIGEPKNLLDSTDSSVCRTDEIINVNQRSSPNCKEVLPKWKAFRLLAMKDKTERCNICGTHFPDRNFLVLHKQLAHMIPEKDVNATPEELLKNCPCHLCTKVFKTRGTLMVHMRVAHMGYNLGFLSKAKESEMSCCENGFNCPTCGKNFRKEQHVTQHLKTHEGKQWECDVCSKMFTTKYFLKKHKRLHSGEMPYKCTICEKTFTFQQSYHKHRLYHKDDKPHTCATCGRSFKELSTLHNHERIHTGEKPFVCETCGKCFRQRVSYLVHRRIHTGVMPYKCTACGKSFRYKVSQRTHKCQAQPEDSSPGLAEASSPSHQQQSRRSDAVASENGILLQSQAATELAPSENNKFILIVNTHGQPILTREADVRATSNFLKEKQTSQSQSRVERDENSVDDRNLWNDRGLPTESVTEECGASPSRESNANDKQRTDEANDFFSLVMSPLENDLSSPSTEMEHLRLESPGNEETRPSESREAANSANSLQRDLNNAIDGIFRNNRSGNSPLETINEESLKQLLYGIDRKNLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -