Iinq008766.1
Basic Information
- Insect
- Ischnus inquisitorius
- Gene Symbol
- -
- Assembly
- GCA_963924025.1
- Location
- OZ001248.1:7004764-7013730[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.015 1.2 9.9 0.3 1 21 34 54 34 55 0.97 2 26 0.74 61 4.6 0.8 1 13 63 75 63 77 0.85 3 26 0.2 17 6.4 1.9 1 21 92 112 92 113 0.95 4 26 0.39 32 5.5 0.5 1 21 137 157 137 158 0.96 5 26 0.43 36 5.3 1.3 1 22 182 203 182 203 0.95 6 26 0.0022 0.18 12.5 0.6 1 22 227 248 227 248 0.96 7 26 1.9 1.6e+02 3.3 0.1 2 11 257 266 256 271 0.83 8 26 0.00031 0.025 15.3 0.2 1 20 284 303 284 305 0.95 9 26 0.0015 0.12 13.1 0.2 1 21 328 348 328 349 0.96 10 26 0.24 20 6.2 1.3 1 12 357 368 357 371 0.87 11 26 0.082 6.8 7.6 2.7 1 21 384 404 384 405 0.95 12 26 0.00062 0.052 14.3 0.4 1 22 429 450 429 450 0.96 13 26 0.18 15 6.5 3.4 1 21 458 478 458 481 0.95 14 26 0.026 2.2 9.2 2.9 1 21 516 536 516 537 0.94 15 26 0.00029 0.024 15.3 0.5 1 22 561 582 561 582 0.95 16 26 2.2 1.8e+02 3.1 0.5 1 14 590 603 590 606 0.84 17 26 6.4e-05 0.0053 17.4 3.3 1 21 628 648 628 649 0.96 18 26 0.0005 0.042 14.6 0.5 1 22 673 694 673 694 0.96 19 26 0.00068 0.057 14.2 1.7 1 23 702 725 702 725 0.98 20 26 0.0021 0.18 12.6 3.7 1 21 757 777 757 781 0.92 21 26 0.025 2.1 9.2 3.4 1 21 797 817 797 818 0.95 22 26 9.4e-05 0.0078 16.9 0.4 1 21 879 899 879 900 0.95 23 26 0.022 1.8 9.4 1.6 2 23 907 929 907 929 0.96 24 26 0.00044 0.037 14.7 1.6 1 23 1060 1083 1060 1083 0.98 25 26 0.0049 0.41 11.5 0.1 1 21 1137 1157 1137 1158 0.96 26 26 0.0019 0.16 12.8 4.2 1 23 1166 1189 1166 1189 0.98
Sequence Information
- Coding Sequence
- ATGGCGACGCTGATGAGACACATAAAGGGAGGTTGCCCGATGGATCCCTCATTCACGGTCGAAGAAAGACAAAAGCGAAACGCCACGAATTCGAGGAAATACGTTTGTTCGAGTTGTTTTCTCGGTTACAAGAACGCAACATCTCTGCGGGCTCATCTGCGTTTCGACTGCGGACAAGCACCCCGTTTCAAGTGTCCGTATTGCAACTATCGAGCTAAGCGGCGACACCTTGCTCCCGTAAACGAGGAAAACGGCGATGAATCGGGAAGCTCGTACAATTGTCGTTACTGCGATCATCCTTTTCTCCAAATCAGATACTTGAAGAGACACCTCAAGAACGGTTGCCTAATGGATTCCAAATTCACGCCCGAAAAAAGACTAAAGCGCAATGAACAGAAATTAAGGAACTACGTTTGTGCGGGATGCTTTGTCGGTTACAAGTTTAGACGAACGCTGGTAAATCATCATCGCGAGGGGTGCGGACAACCGCCAAGATACAAGTGTCCTTATTTCTCGGAAAGCCGAAGGGAGACGTCGAGTTCGTACCATTGCAAATTCTGCAACGATCCCTTTCCCAGCACTAAATACGTGGAGCGACACATTAAAAGAGGTTGCGTTATGGATCCCGAATTCTCGATTGAGAAAAGACAGTTGCTCAATGCTGAAAGATCGAGAAATTACGTGTGTTCGAGATGCTTTCTCGGttacaagaacaaaaaatctcTGAACGCACATCTTCGCATGGTGTGTGGACAAGAGTCGAAATTGAAGTGTCCCTATTGCGATTGGAGAACGAAACTGCCACACGCGGTCTCGATAATGGAAAATGGAAGCGAATCGTCGGTCTGGTACCATTGCGACTTCTGCGGTGTGCCCTTCGTCAATAAGCGGCTACTAGCGCGACACATGTCTGGCTGCCTCATGAATCCCTCGTTTTCAATCAAGGAACGTCAGAGGCTCAATGCAATTAGATCGAGAAATTACGTCTGTCCGAAGTGTTTTCTCGGGTACAAGAATAAAGGATCGCTGAGTTCTCATCTTCGATTGGAGTGCGGACAAATGCCCAAGTTCAAGTGTCCCTATTGTGACTTTGCGTTCAAGTTACGACACAGCGATCCGTTGAGTATAAGAGAAGAGAAGTCGGGCGATTATCGCTGCACGTTCTGCAAGTGTCCATATTCGACGATGGGACACGTTGTGAGACACATAAACAAGGGTTGCCTATTGGATCCGtcgttctcgatcgagaaaagacgaacgatgaatatcgaaaaatcgagaaattacgTTTGCCCGAAGTGCTTTCTCGGTTACAAGAACAATAGATCGCTTAATACTCATCTACGGATGGAGTGCGGTCAGGCGCCGAGATTTAAGTGTCCGTACTGCGAAGCCCGATCGAAACAACGACACAACATTCTCGCTCATGTGCGCTGTCGTCATCCCGGTCTTCCGTTGTTTTCCGAGGTGCCGTCGTACAAATTCACGAAGCTTTGGAACTATGTTTCAGCTACGTCAAGGGAGGGCGACGAGTTGCTCGGTGCTTACATTTGCGAATTCTGCAAGTGTCCGTACTCGTCACGGGGACATCTCGATCGTCACATTCACATGGGTTGTATAATGGATCCATCGTGCGCATTCGTCAAAAGAGCCATTAACAACACGATAAATTTGAAGGATTACATTTGCCCGCGTTGTTCCCGCGGTTATAAAAACAAACGGACGTTAACGAATCATCTTCGGGTGGAGTGTGGAAAGGAGCCGAAATTCCAGTGTCCCTATTGCGAAGCAAAATCGAAGCAACGCGCCAATACTTACAAGTACGTGCGGTATCGACATCCAGCATCTTCGGAGGATGGGCGAGAAGACGCGCCGGCGGAGTACCGTTGCGATTACTGCAATTGTCCGTATTCCTCGCAGGGGCATCTGAAGCGTCACATAAACAAGGGTTGCTTCATGGATCCATCGTTCTCGGTCGAGGCGAGGCGCACTCTGAACGTAATGGAATCGAGAAATTACGTGTGTCCGAGATGCTCTCAGGGTTACAAAAACAAGAGAACTCTGAACAGTCATCTACGAATGGCGTGCGGTCGCGAGCCAAAGTTTCGTTGTCCTTACTGCGGCCTCAAGAGCAAACATCCGCCGAATATATACACTCACATAAGAAGACGACACAAGGGAATGGACGCTTGTCTGATCGTCGATCAGGAGAGGGAGGAATTGCGCCTGACCATTCAGCGCGTCGACGCGAAAGGCCCCAAGAGATGTTACACGTGCAAATATTGCACCAAGACCTTCATGCAGATTGGGCATTTGAGCGCTCACGTTAAGGGTTCCTGTCACTGGAATCCCTCGGCGACGTGTCATCAAACGTCGCGGAAACGTCCGCATTCTTGCACACAGTGCGGCTCGAGTTACATGAAACGATCGCATCTGATTTATCATATTCGCCACGACTGCGGGCGCACACAGAAGTGTTTTCGTTGCGAGAAAACGTTTCTTCACGATTCGAGGCGTCgactcgatcgttcgacggTGGAGCGTCGTTACTCGAAGGTTCAGACTCACCAACGGCCGGGATACGCTCATAAATCATTTGAGGACATTGCCGCGCAGCGGGGACTCAAAGCGATCTTCGCTTGTTCCGATTGCGACGTGAGCTTCAGCACTAAAGCGTCGCTTACCTATCACGTGCGGCACAATTGCGGAAAGATGCGACGTTGCAGCTACTGCGGAAGCGTGTACAAGCGACTGCAGGATATGAAGTTGCATTTCAAGCGTTATCACGATAATCTACCGTACCAAGTGACGATTTATCTAAGCTCTTCGCACACCTGCCGGACGTTCGGTGTCGCCGAGCACTTTTCGTCGCTGCGGACGAGTCATCAACAGTCGAGTAGCTTTCAGCCCAGAAGCGAGATTTCTCGTGGAGCGAGGAGAATCGTCGGGAGAAACAAAGTTGATTATTATCAGTGCACGTCTCGTGGATATCGCGGTGAGGCGAGTACGAGTTCCGGTACGTCGACGTACTGGGGCCAGCATCAGCGCGACCTCAGGTTTCACGAGGCCCCGTTGAGCGGACAACGGAAGTTTCATTGTCCGCGATGCAACAGCGGTTACACGAGACTCGCCGATATGAAGACACACTGCCAGTTCCAGTGTGGCAAAGAGCCCCGCTATCAGTGTCCCTACTGCACGAAAAAAGCCAAATTCTCGTCCAACATGTACGTTCACGTGCGGCGAATGCACAAGGACGAGAAGCTTGTGATAATCGATCTTCACAAACAATTGTCGAGAGTCGTTtatcgcgaacgcgagacgAATCAGCCCCGTACCGGATACGAATGTTATTCCGTCGCCAGACTGTTGACGGAGAATCGTACGTACGCCCATAGCGCTTTAACCAGATTTCCATGCGCCAACTGCCCGAGCGTCTTCGGACAGAAGCGAAGCTTGGTTACGCACATGAGATACGAGTGTGGACAACCACCGAGATTCAAGTGTCCGTACTGCGAGCTAACGTCGAAGAAGACATCGAACGTTCACAAGCACATAAGAAGAAAACACCGCGGCAAGGCAGTCTATCATCAGGATTTATACCATTCGCCCGACTTAGCCGTGTAG
- Protein Sequence
- MATLMRHIKGGCPMDPSFTVEERQKRNATNSRKYVCSSCFLGYKNATSLRAHLRFDCGQAPRFKCPYCNYRAKRRHLAPVNEENGDESGSSYNCRYCDHPFLQIRYLKRHLKNGCLMDSKFTPEKRLKRNEQKLRNYVCAGCFVGYKFRRTLVNHHREGCGQPPRYKCPYFSESRRETSSSYHCKFCNDPFPSTKYVERHIKRGCVMDPEFSIEKRQLLNAERSRNYVCSRCFLGYKNKKSLNAHLRMVCGQESKLKCPYCDWRTKLPHAVSIMENGSESSVWYHCDFCGVPFVNKRLLARHMSGCLMNPSFSIKERQRLNAIRSRNYVCPKCFLGYKNKGSLSSHLRLECGQMPKFKCPYCDFAFKLRHSDPLSIREEKSGDYRCTFCKCPYSTMGHVVRHINKGCLLDPSFSIEKRRTMNIEKSRNYVCPKCFLGYKNNRSLNTHLRMECGQAPRFKCPYCEARSKQRHNILAHVRCRHPGLPLFSEVPSYKFTKLWNYVSATSREGDELLGAYICEFCKCPYSSRGHLDRHIHMGCIMDPSCAFVKRAINNTINLKDYICPRCSRGYKNKRTLTNHLRVECGKEPKFQCPYCEAKSKQRANTYKYVRYRHPASSEDGREDAPAEYRCDYCNCPYSSQGHLKRHINKGCFMDPSFSVEARRTLNVMESRNYVCPRCSQGYKNKRTLNSHLRMACGREPKFRCPYCGLKSKHPPNIYTHIRRRHKGMDACLIVDQEREELRLTIQRVDAKGPKRCYTCKYCTKTFMQIGHLSAHVKGSCHWNPSATCHQTSRKRPHSCTQCGSSYMKRSHLIYHIRHDCGRTQKCFRCEKTFLHDSRRRLDRSTVERRYSKVQTHQRPGYAHKSFEDIAAQRGLKAIFACSDCDVSFSTKASLTYHVRHNCGKMRRCSYCGSVYKRLQDMKLHFKRYHDNLPYQVTIYLSSSHTCRTFGVAEHFSSLRTSHQQSSSFQPRSEISRGARRIVGRNKVDYYQCTSRGYRGEASTSSGTSTYWGQHQRDLRFHEAPLSGQRKFHCPRCNSGYTRLADMKTHCQFQCGKEPRYQCPYCTKKAKFSSNMYVHVRRMHKDEKLVIIDLHKQLSRVVYRERETNQPRTGYECYSVARLLTENRTYAHSALTRFPCANCPSVFGQKRSLVTHMRYECGQPPRFKCPYCELTSKKTSNVHKHIRRKHRGKAVYHQDLYHSPDLAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -