Iinq006626.1
Basic Information
- Insect
- Ischnus inquisitorius
- Gene Symbol
- -
- Assembly
- GCA_963924025.1
- Location
- OZ001247.1:2935431-2938652[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00049 0.041 14.6 0.3 3 23 21 41 19 41 0.96 2 12 0.0015 0.13 13.1 1.6 1 23 79 102 79 102 0.97 3 12 6.3e-06 0.00053 20.6 0.6 3 23 110 130 108 130 0.97 4 12 0.00012 0.01 16.5 3.8 3 23 138 158 136 158 0.96 5 12 8.6e-07 7.2e-05 23.3 0.2 1 23 164 186 164 186 0.98 6 12 0.011 0.94 10.3 2.0 1 23 224 246 224 246 0.96 7 12 6.4e-05 0.0053 17.4 0.9 1 23 715 737 715 737 0.97 8 12 8.2e-05 0.0068 17.1 0.3 1 23 744 767 744 767 0.93 9 12 2.6e-05 0.0022 18.6 0.1 1 23 775 798 775 798 0.97 10 12 2e-05 0.0017 19.0 6.3 1 23 804 826 804 826 0.98 11 12 0.0016 0.13 13.0 5.4 1 23 832 854 832 854 0.98 12 12 6.3e-07 5.2e-05 23.7 0.6 1 23 860 882 860 882 0.98
Sequence Information
- Coding Sequence
- ATGAGCGTCAACGATGAACGGAGTCCCGCGGTCGTGAACGAAAATTTGACGCCTCTCGCGTGCTCGATATGCGGCAAAGAATTCTCAAGCGAAAAGCGTTACTTCGGACACTTGAGAATTCACAGCGGCGAGGTACTCTGGTGTTGCGACAAATGTCCGCGTTCGAGAAGCGTCTTCGACTCTCAGTCGCGACTGAGGAGTCACGAGAACGCGTGTCACGCGCCGTCCAGGCCTCACAAGTGCTCCAAGTGTGACGACGCCTTCGACAGAGCTTCGCAGCTCGACTATCACAGACGCAGCGTGCATCTGGGCGAAAAGTCGCAGATCTGTCAGATATGCGGCAAAGGGTTCTTTCGCAAGACCGATCTTCGCACTCATCTGAATGTTCATCTCGGTACTAATCAATCCATCTGCGAGATATGCGGCAGAAAATTCAATCACGTTTCCAATCTCATAAGGCACTGCCGAACCCACGCAGGCTCCAAACCTTACCCTTGCGCAGTTTGCGGCAAAAGATTCACGCAGATAAGCTCGTTGGCGAGACACAAACGCATACACCAGAGGGAATCTAGCGTAgcttttgataaaaataaaaatgatgaagcAACGATTGACAATGACGAGAAACATTGCGTGGAACTCGACAAAAAGAAGTCTGTTAAACGACAACATTACTGCCGAATGTGCGGAGAAAGCTTTCAATTCATGGTGCTTCTCAGGCAACACGAAAGACTCCATTCCAAAACGATTGAAAATCATGACAATAAAACCCATGGAAAGGATCGACAAACCAGCATCCCGGAGAACATCAGAGATCAAACAGAGATATCGTCGAATGCATCGAGCGGCGACGATTGGCGAGATTTCAGCacggagagagaaacgaatgcCGTGGATTTGGCGATCCCGGAGCCAGCCGCGATTCGAGATCACCTGATGGAATTGGATCGTAAGATGAACGCGATCGCGAAAGAATCCGTGCGCGACGTGAGTATCAGCATATCCGATATTCTGAGTCCTTACGATTGCGACGAGATCGTGCTATCGAGTGCCGGAGGATTGGAGCCGAAATTGTACGAAAGTTCGAGCGCTCCGACAAAGCACGACGTTTTGGAAAACGACATAGCGCAGTGCCTGAGCGGTGTGGATTTTGCTTCGAACATCGATAATCAGTTGCTGGAAGCGTCGAACGACAAATCAACTGGAAGGAGCGGCACCCGGCTAAAACTCCAatcgagagaagcgaaaacATCGCCGTCGAAATTGCTCGCGATGAGGGAACAACGAAACAAGTGCTTGCACGTCGAGGGTAGTCAATTGTACATCGAAATATGCGAGTCCGAGTATCTCAAGAGTTCGAACTTGCAAGCGCTCGAATTACAGGAGATCGAGAACGTTGCGTTGCTTCGAGAAGTCTTTGACGCCGCCGATGCCGACCCGGTGGCATCACTGAGAACGAAATTCCAGAAAGAAACTGCCGCCGGCGCGTCGACCAGCGATGATGAGGAAGTAGAAACTACAACGGATACAATCGGTGCCAAAGAACCAACGTTAAGGCTGGTACAAACCGAAAACGGCGAACAATTTTACGAGTTGCTGATAAACAATAATCAGTGCAGCGAAGATTTCGCGGGTGTCGACACGGCCGAAAATTCTCAGGGAGAAACGTTGCAGGACGATAGTAGCGAATCAGATCCGAAATTGTCCGCTACCACGaacgatgataattcgtcaaTTGAATCTCGGAGAGAATCGAACGATCTCGAAAAATCACCGAGCGAATTCTTGCCGAACTCCAACGAATTCTTTCAACTTCTACCGAATCCGGAGAATTGTCGAGAACTGAATGGTTCGTCGTCGCAGAGTGACGCCCAAATGCCGATGGTGCGGCTGATACAAAACGAGGACGGTGAACAGTTCTTCGAATTGATAAGAGAACCATTGGAgtacgagagaaacaaaagtgTCTGCGACAATTCGCGGGATGAAAAATCGCCGGAGAGTAGAGCCGATGAAGAAAGCTCCAAAACCGCAGACGATCCGAAATCAGAATCTGCGATTACGAACTCGGTTTCGagaaaggagaagaaagaaatcacGACGGATACCCCGCAACGTTCGTCGAAGGATCGATCGAGGAAATTTCAATGCAACGAATGCGACAAGTGGTTCTCGACCGCGTACAATTTTAAGCAACACGCCGGCACGCATTTCTCGGATCAGCAACAATTCCAATGCAAAGATTGCGGCCTCTCGTTCGCTTGGAAATCAACGCTGAACAAACATCTCGCGGGAAATCATCGACCGGATGGCCCGCAAAAATTCGTTTGCGAAATATGTCCGAAAGTCTACAGTACTTTGTCTCAAGTAAACGAGCACGTGAAGAGGGATCATCTCAAAGAGCGGAATCACGTGTGTCCGCATTGTGGAAAATCgttcttcaaaaaattcgatctcAAGACCCACAGCAGAACGCACACGAACGAACGTCCCTATGTTTGTCGCGCTTGCGGCAAGAGATTCCATCATCAGAGTCACATCATAAGACACGAGCGTATACACTCGGGCGAACGTCCTTACGCTTGCAACATTTGTCAGAGAACGTTCACGCAACCGGGCTCGTTGAAGGCTCACAGACAGAGGCATCGCGACGTTAAAATCGATATTCTCGAGTATCGAATGGACGAGGACGATCCCATGTCCTTGGTGGTGCAATAG
- Protein Sequence
- MSVNDERSPAVVNENLTPLACSICGKEFSSEKRYFGHLRIHSGEVLWCCDKCPRSRSVFDSQSRLRSHENACHAPSRPHKCSKCDDAFDRASQLDYHRRSVHLGEKSQICQICGKGFFRKTDLRTHLNVHLGTNQSICEICGRKFNHVSNLIRHCRTHAGSKPYPCAVCGKRFTQISSLARHKRIHQRESSVAFDKNKNDEATIDNDEKHCVELDKKKSVKRQHYCRMCGESFQFMVLLRQHERLHSKTIENHDNKTHGKDRQTSIPENIRDQTEISSNASSGDDWRDFSTERETNAVDLAIPEPAAIRDHLMELDRKMNAIAKESVRDVSISISDILSPYDCDEIVLSSAGGLEPKLYESSSAPTKHDVLENDIAQCLSGVDFASNIDNQLLEASNDKSTGRSGTRLKLQSREAKTSPSKLLAMREQRNKCLHVEGSQLYIEICESEYLKSSNLQALELQEIENVALLREVFDAADADPVASLRTKFQKETAAGASTSDDEEVETTTDTIGAKEPTLRLVQTENGEQFYELLINNNQCSEDFAGVDTAENSQGETLQDDSSESDPKLSATTNDDNSSIESRRESNDLEKSPSEFLPNSNEFFQLLPNPENCRELNGSSSQSDAQMPMVRLIQNEDGEQFFELIREPLEYERNKSVCDNSRDEKSPESRADEESSKTADDPKSESAITNSVSRKEKKEITTDTPQRSSKDRSRKFQCNECDKWFSTAYNFKQHAGTHFSDQQQFQCKDCGLSFAWKSTLNKHLAGNHRPDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKERNHVCPHCGKSFFKKFDLKTHSRTHTNERPYVCRACGKRFHHQSHIIRHERIHSGERPYACNICQRTFTQPGSLKAHRQRHRDVKIDILEYRMDEDDPMSLVVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00397514;
- 90% Identity
- -
- 80% Identity
- -