Iinq001008.1
Basic Information
- Insect
- Ischnus inquisitorius
- Gene Symbol
- -
- Assembly
- GCA_963924025.1
- Location
- OZ001243.1:11862269-11865378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00027 0.023 15.4 0.8 1 23 60 83 60 83 0.96 2 21 0.0029 0.24 12.2 5.2 1 23 89 111 89 111 0.98 3 21 0.00029 0.025 15.3 4.1 1 23 120 143 120 143 0.95 4 21 0.0051 0.43 11.4 1.3 1 23 149 171 149 171 0.92 5 21 3.4e-05 0.0028 18.3 2.3 1 23 176 199 176 199 0.96 6 21 0.0026 0.21 12.3 0.9 1 23 205 227 205 227 0.97 7 21 3.7e-06 0.00031 21.3 0.8 1 23 231 253 231 253 0.97 8 21 0.00025 0.021 15.5 3.9 1 23 259 281 259 281 0.98 9 21 0.075 6.2 7.7 2.0 1 14 287 300 287 307 0.87 10 21 0.011 0.92 10.3 2.0 2 23 407 428 406 428 0.95 11 21 0.022 1.9 9.4 4.0 1 23 463 486 463 486 0.97 12 21 0.082 6.8 7.6 3.4 1 23 513 536 513 536 0.95 13 21 0.0022 0.19 12.5 5.1 2 23 577 598 576 598 0.97 14 21 0.0044 0.37 11.6 2.8 1 23 607 630 607 630 0.98 15 21 0.032 2.7 8.9 1.2 1 23 645 668 645 668 0.95 16 21 3e-05 0.0025 18.4 1.8 1 23 674 697 674 697 0.95 17 21 0.022 1.8 9.4 0.8 3 23 704 725 702 725 0.94 18 21 0.0029 0.24 12.2 0.4 1 23 730 753 730 753 0.97 19 21 3.7e-08 3.1e-06 27.6 0.4 2 23 760 781 759 781 0.97 20 21 1.1e-06 8.8e-05 23.0 0.5 1 23 787 809 787 809 0.97 21 21 6.6e-07 5.5e-05 23.6 0.1 1 23 815 837 815 837 0.98
Sequence Information
- Coding Sequence
- ATGTTAAAAATGTCAAGAAGTTCGAGATCGAACAGAAAGTCTCCTTCACCACGATCACCGCCGGAGGGCCCCAAAATCGCATCGGAAAATTTCACTGTTAATGAGAGATTGGCTTTCGACGATTCCGACGAAAATGAAGACTGCGACGCTCTTTACAAGCGACTGAACGATGGCAATTACACCTGCGACATTTGTCAAGCGACTTTCGAGCAAAAGAGCAAAATTTTACGTCACATAACGAGCAAGCACAGCTTTCATCGTCCCTTCAAGTGTTGCGTGTGCGCGAAAGCGTTCAAGTACAAGTGCGATCTGAAAGCTCACAAATTAGTTCATCAAGACGTGGACACGAGCATGCTGCACTCTTGCGACAAGTGCGACTAcacgacgaaaacgaagaacAACCTGAAGGCCCACTACATACGAAAGCACACCGACGACTACAAATTCGCTTGCGAACACTGTGGCAAACGTTTCAAGATGGTATGGGATCTGAAATTTCATCTCGGCACGCACGGCAATTCGCAGCACATGTGCGACATATGCGGTAGATTCTACACGAGCAACTATTCCCTCTACAAGCATCGAAAAGTCGCCCATCTCAACAATTACGAGTTTCAATGTAACGTATGCAACAAGCGACTGTTGACGCAAGAAAATTTGGACAATCACATGACTCAGCATAATCAAACGTACGCATGCAAGGAGTGCGGCAAAATGTTCGCCTCGAAGAGATATCTCGCGACTCACACGACGACGCACACTGGCGTTAAACCTTATTCCTGCAGTGTGTGTGAGAAAACTTTCAGAACCTCCCACATGCGAAACACCCATCTTCTCACGCATTCGAGTGAACGGCCGCATATATGTGATCTTTGTGGTCAGTCATTCAAGCGACGAAGCTGCGCCAAATTCCACGAGAGGGGATCGAAGAGCATCGACATCGCGATCGGacgtttcgatctcgaaaagaatttaatgGCCATGGCGCCATGGCAACACGCAGGATCCAACGGCAGTCCGCAATGTGGCTCGATGCCTGTTAACTCCGAGCGTGGGAAGGTCAAGCTCGACAACGGTGTCGACCCGCTGGAATCTTGTTCGGAGGTCAAGTCCGAAACGGAGGAGGTACCGCCCGATGTGTCTTCACAATTCGATCGAGACGAACGTCGCTGTCTCGGGTCGTTGGCTCATCTCTGCGAGATCGCGATCGAATGGTGCAATTGCGACAAATGCGGCGCGAAATTTCCACTGGAGAATATGTTGAAGCGTCACAAACTCTCTCACAAGCACCTcgccgagacgagaaaaatcaaaggtTCGGCAAATTCGCGACTCGTTAGATACAAAGTAACGCAATCGCGTCGAACTGGCCGCGCGAAATCAAGATACATTTGCCACATATGCGACTTCGCTTGCGACAAACGCGCGTCAATGTCGTCGCACTTGAGGAAGAAACACGATACGAGAAACGCAGCTGAGGAAGAGAACGCGAAACGCCAAGTTTGCGTCGACAGTATCCCGAGGAGCGATGAAACTTTTGCCTGTGAAAATTGTAGCTTCGAGTGCAAGAAGCGAAGCACACTCGAGTCGCACGTCAGCAAGAAGCATTCTCGCGCGGTGAAGctcgaaatcgacgaaacggTCGAGGAGGAGCCTTACGAATGCGCGGAGCATGATCTTCTCAGACAAGCGAGAAATCGCAAAAAGTCATCGACCGGGGAGAGCCTGAAATGCAACACTTGCGGGTTCGAGTGCACGAATCGCAGTACCCTGTACTCGCACAAGCGTCGTCATCGCACGAAGGAAGCCAGCGAGGTCTATTCGTGCAACGAGTGTGACTTCAAGACCGAAAAGAAGACGTCGCTGTACTCCCACATAAAGCGAAAGCACAAACCGCCAAGAGCGTCAAACGATCCCGAACAACCGGAGCTCTTTTCGTGCGGTCAGTGCGAttacaagaataaaaataagtaCGAACTCAAGGTACACGTGGCGCGAAAGCACACGGACGACTACAAGTTCTCCTGCGAGACGTGCAACaagaaattcaaggtcaaggGGGATTTGACAAATCACGTGCGATTCAGCCATCGCGAGCAACCAGTCATATGCGACGTTTGTGGAAAAACTTGTCTGAACAGTAACTCGCTTTACGTGCATCAAAAATTTGCTCACTACAAAGCGAAGTACGAGTGTCAGGTTTGCAAACGGCGCATGGTCAGTCAGGAGAACCTCGACGAGCACATGCTGAGACAgcacgagaaacgcgaaaacgtCGTTTGCGAGGAGtgcggaaaaactttttcgcgCAATAGCCGACTGAAGATACACATGCGCATACACACCGGTGACAAACCTTACGATTGCACGATATGCAACAAGTCCTTCGCGAGAAGAACGGCGTTGAAGCAACATCTTCTCATTCACACGGGTATGCGGCCGTACGTGTGCGACATATGCGGCAAAGCCTTCACTCAAAAGCCTGGACTGATAAGCCATCGAAAGTCACATCCGGGTCCACTGCCGCCTCTTCCGCGAGTGCTTATCGATCACATACTCAACGATGTCTTGAGACCTCCACTATGA
- Protein Sequence
- MLKMSRSSRSNRKSPSPRSPPEGPKIASENFTVNERLAFDDSDENEDCDALYKRLNDGNYTCDICQATFEQKSKILRHITSKHSFHRPFKCCVCAKAFKYKCDLKAHKLVHQDVDTSMLHSCDKCDYTTKTKNNLKAHYIRKHTDDYKFACEHCGKRFKMVWDLKFHLGTHGNSQHMCDICGRFYTSNYSLYKHRKVAHLNNYEFQCNVCNKRLLTQENLDNHMTQHNQTYACKECGKMFASKRYLATHTTTHTGVKPYSCSVCEKTFRTSHMRNTHLLTHSSERPHICDLCGQSFKRRSCAKFHERGSKSIDIAIGRFDLEKNLMAMAPWQHAGSNGSPQCGSMPVNSERGKVKLDNGVDPLESCSEVKSETEEVPPDVSSQFDRDERRCLGSLAHLCEIAIEWCNCDKCGAKFPLENMLKRHKLSHKHLAETRKIKGSANSRLVRYKVTQSRRTGRAKSRYICHICDFACDKRASMSSHLRKKHDTRNAAEEENAKRQVCVDSIPRSDETFACENCSFECKKRSTLESHVSKKHSRAVKLEIDETVEEEPYECAEHDLLRQARNRKKSSTGESLKCNTCGFECTNRSTLYSHKRRHRTKEASEVYSCNECDFKTEKKTSLYSHIKRKHKPPRASNDPEQPELFSCGQCDYKNKNKYELKVHVARKHTDDYKFSCETCNKKFKVKGDLTNHVRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQVCKRRMVSQENLDEHMLRQHEKRENVVCEECGKTFSRNSRLKIHMRIHTGDKPYDCTICNKSFARRTALKQHLLIHTGMRPYVCDICGKAFTQKPGLISHRKSHPGPLPPLPRVLIDHILNDVLRPPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -