Iinq000802.1
Basic Information
- Insect
- Ischnus inquisitorius
- Gene Symbol
- -
- Assembly
- GCA_963924025.1
- Location
- OZ001243.1:8627955-8631806[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.1 1.8e+02 3.2 0.0 2 19 384 401 383 404 0.89 2 17 0.0028 0.23 12.2 0.1 2 19 425 442 424 445 0.93 3 17 0.00029 0.024 15.3 0.7 1 23 452 474 452 474 0.97 4 17 0.0084 0.7 10.7 0.1 2 23 486 508 486 508 0.92 5 17 1.8e-05 0.0015 19.1 0.2 1 23 515 537 515 537 0.98 6 17 6.2e-06 0.00052 20.6 2.6 1 23 543 565 543 565 0.96 7 17 7.4e-05 0.0061 17.2 2.9 1 23 574 596 574 596 0.97 8 17 1.2e-05 0.00098 19.7 0.6 1 23 602 624 602 624 0.97 9 17 1.4e-06 0.00011 22.6 0.3 1 23 629 651 629 651 0.98 10 17 0.0046 0.38 11.6 4.5 1 23 658 680 658 680 0.98 11 17 0.001 0.084 13.6 0.1 2 23 700 721 699 721 0.95 12 17 8.1e-05 0.0067 17.1 1.2 2 23 729 751 728 751 0.96 13 17 0.0052 0.43 11.4 0.4 1 23 757 779 757 779 0.96 14 17 0.0015 0.12 13.1 2.9 1 23 785 807 785 807 0.98 15 17 1.6e-07 1.3e-05 25.6 1.2 1 23 813 835 813 835 0.97 16 17 3e-06 0.00025 21.6 1.7 1 23 841 863 841 863 0.98 17 17 2.8e-05 0.0024 18.5 0.3 2 23 869 890 868 890 0.96
Sequence Information
- Coding Sequence
- atgaaaatcgtatGCTCGGCGACGTCGTGCAAGTACTCGTCGGTGAACGAAGATTCGTCGCACATTGTATTCATAAGCTTTCCGAACAATGACACCGTGTCGGCGTGGGCGCACAATTGCGGACGACCCGATTTGCTCGAAAAATCCGTGCCAGAACTTCATGCGAATTATTACATATGCTCCGATCACATCgaggaacgatttttcgtcagCAAGGCAAATCCGATCATCGTGGCGCAGGATGCCGTGCCCACTATCTTCGGAGCCGCCATTCCTTCAGGTGTCATTCTGAATTCCATGAAAAACGACTATTGCTCCGAACGCTCTATAGCATCTCTGCAATTAACAGAATGCATGAACGACGTCGATCGAGCTTGTCACATACAAGATTTGTCCGACGAAGTAGCACCGGATTACAGAGAAACTTACAGCGGAGAAGAGGACACCGATACTGCGACTAGTCTTAATTTCTGCGATATGACGGCGAGCATAGAGAATCTTCAAGACATTTCGGTCAGATCGACGAGTGCGTGCCGCATGTGCGGCCAGACGGTGACGGATGGAATAGAAATATTCGAGGCAAAGGGGTTGGAACTgagattgagagaaaaaattggattgcACACGCCGATAAGCGTTCAGCCTGAGGACGCTCTGCCTCGCAAAATTTGCACCGATTGCTGCGACAAACTCGAAGCTGCTCACTCGCTGGTCGTTACTTGCTTGAGAACGGACATCAGATTGAGGAGATATTTCAATATCAGCGGCAAACCCGGCTACGATCCAAAATTCGAGAAGCTCGTGACGGAGTGCGCTCTGGAAATTGCGGGCGAAGTGAGTTTGGAAAATGTCGTTGATGCCGGCGATCTGGCGAGCAACGTGAAGAAGATCGAGAAGCCGCCGAACACGACTAAATTCAATTGCAAATGGAAAGATACTGTGGGCGGTATAGAATTGGAGCAGGTGCAAATATGCCCGATCGCCGAGGGGAGCGCCGAAAACATGTCGGGCTTCAAGTACGTGGTCCACGCAgatttcaataatttactgCAGGTCCTCAGCGGCATCGATCACAAAAGCGACGACGTGAGCAACGaattgtcgacgacgatcgtcgaGACGGCGCCGTCCGTGGAAGCATCGCGACTGGTTTGTGCGACCTGTAATGTTGCattcgagtctcgcgatatGTACGACAGTCACGGACTGATTTGCAACACCGAAACGGAAACGCGCAGCCCAAAACCGAGCATCGAGCTGGAATCCAGTATCGTTTGTCCGATTTGCAGACTCGCGTTCGCCAATGCCGACTACTTGGAGAAACACTCGTGCAACATCGATACTGCGGCGCAATACAATTGTCGAATttgcgataaattattttccaacAAGAACGATCTCGACAACCACGAATTGTCCcacagggaaaaaaatcattccagCTCGACGCATCGACGCTGTGGCTATTGCCTCGCTGTTTTTGAGAATCGCAAGGATCTGCAGTCTCACATAGCCGACAATCACGATGGCCTGCAGCCGCTGTACAGATGCAGTATCTGCGACAAAACGTACGAGAAATGGTCGAGTCTCGACGTTCACGAGGCGACGCATCGAGCGGACAAGCCATATCTGTGCGATCTTTGCGGCAAGAGTTTCAAGCATTCCAACAACTTGCGCGGGCACAAGAGGATTCATTTGGACGATGCGAAGAAGAAGCGCCACGTGTGCGACGTATGCGGCAGCGCGTTCCGATCGAGATTTCATCTCCGGGAACACATGAATCAGCACAACGGCGACAAACCGTACGCGTGCGAGGAGTGCGGAAAAGCATTTTACAAGAGGATACAATTGCGACAGCATCGATTATCGCACGGCACAAACAAGTATGCGTGTCCAATTTGTGGGGTTACGTTCAATCGGCGTGGCAATATGAATACGCATCTTAAGAGGCACGGAAAGAGCGACGGAATGTATACGTGTAGCGTTTGCGAATACAAATGCAAGTCGATGAGCGAGCTGAAAATGCATCGCAAGCAACACACCGAGAACGACATAGTGGAGAGCATAAAGCTAAAGACAGCCGACAAAAGGGTGTGGCAGTGCAAGATATGCGACAAGGTATTTCCAAAACGTGCTATTCTGATGAATCACGAGCGCGCGCACACTGGCGAACGGATGAAAGTCGAGTGCGACAAGTGCGgcaaaaaattgtcgagcAAGAGTTCGCTGAAGTATCACAACAGATCGTTACACTCGACGGAACGACCGCACATGTGTCAATTCTGTGGCGAGGCTTTCGTCTCAAAGGAAGCGAGATTGATACACGAAAGAATACACACCGGCGAGCGGCCTTACGCCTGCAAAATTTGCAACATGCAATATCGTTGCTCGAGTAATCTCAGTCAACATATGAAAATCCACTCGTCTATGAAGCCGCACGTTTGTCCTTATTGCAACAAGACCTTTACGCGAAAGGGCGCCCTCAGGGTACACGAGAGAATACACACGGGTCTTAAACCGTTCGTGTGCGAAATCTGTAATCGTTCTTTCTCACAGAAGAACGACATGTTGAAGCACACGAAGACCCATCGGGCAAGGCCGATGCAGTGCGAAAAATGCGACGAGGCATTCGAGACTAAAAGTGAAATGACAAAACATCTCGACGTTCACAAATCAAATCTCGTCGATAATTCGGCCATGGCGTCGTATGACGCGATCGCCGAGCCACTGGAGACTTATACTCTGAGTCTCCAGTGCTCGAGTATGCGGGAATGCAATGAACTGCAGAATATACAAAGTCAATGA
- Protein Sequence
- MKIVCSATSCKYSSVNEDSSHIVFISFPNNDTVSAWAHNCGRPDLLEKSVPELHANYYICSDHIEERFFVSKANPIIVAQDAVPTIFGAAIPSGVILNSMKNDYCSERSIASLQLTECMNDVDRACHIQDLSDEVAPDYRETYSGEEDTDTATSLNFCDMTASIENLQDISVRSTSACRMCGQTVTDGIEIFEAKGLELRLREKIGLHTPISVQPEDALPRKICTDCCDKLEAAHSLVVTCLRTDIRLRRYFNISGKPGYDPKFEKLVTECALEIAGEVSLENVVDAGDLASNVKKIEKPPNTTKFNCKWKDTVGGIELEQVQICPIAEGSAENMSGFKYVVHADFNNLLQVLSGIDHKSDDVSNELSTTIVETAPSVEASRLVCATCNVAFESRDMYDSHGLICNTETETRSPKPSIELESSIVCPICRLAFANADYLEKHSCNIDTAAQYNCRICDKLFSNKNDLDNHELSHREKNHSSSTHRRCGYCLAVFENRKDLQSHIADNHDGLQPLYRCSICDKTYEKWSSLDVHEATHRADKPYLCDLCGKSFKHSNNLRGHKRIHLDDAKKKRHVCDVCGSAFRSRFHLREHMNQHNGDKPYACEECGKAFYKRIQLRQHRLSHGTNKYACPICGVTFNRRGNMNTHLKRHGKSDGMYTCSVCEYKCKSMSELKMHRKQHTENDIVESIKLKTADKRVWQCKICDKVFPKRAILMNHERAHTGERMKVECDKCGKKLSSKSSLKYHNRSLHSTERPHMCQFCGEAFVSKEARLIHERIHTGERPYACKICNMQYRCSSNLSQHMKIHSSMKPHVCPYCNKTFTRKGALRVHERIHTGLKPFVCEICNRSFSQKNDMLKHTKTHRARPMQCEKCDEAFETKSEMTKHLDVHKSNLVDNSAMASYDAIAEPLETYTLSLQCSSMRECNELQNIQSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398273; iTF_00397501;
- 90% Identity
- -
- 80% Identity
- -