genemark-scaffold_7952-processed-gene-0.2-mRNA-1
Basic Information
- Insect
- Ischnura elegans
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:7018-9472[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.56 7.2e+02 0.8 0.1 18 28 76 86 71 93 0.81 2 20 0.098 1.3e+02 3.2 3.5 18 38 140 161 130 165 0.86 3 20 0.11 1.5e+02 3.0 0.6 18 41 168 188 162 190 0.84 4 20 0.0053 6.9 7.3 0.6 14 29 192 207 189 218 0.82 5 20 0.017 21 5.7 0.4 17 29 251 263 241 274 0.77 6 20 0.0049 6.3 7.4 1.6 18 41 280 300 268 302 0.86 7 20 0.01 14 6.4 0.3 18 29 308 319 303 331 0.83 8 20 0.00026 0.34 11.5 1.7 18 41 336 356 324 358 0.87 9 20 0.0053 6.8 7.3 0.5 18 30 364 376 359 386 0.76 10 20 0.0071 9.2 6.9 1.0 17 33 391 404 381 414 0.77 11 20 0.013 17 6.0 0.5 17 30 419 432 408 442 0.74 12 20 0.0052 6.7 7.3 0.5 18 33 448 460 438 470 0.78 13 20 0.043 56 4.4 2.0 18 41 476 496 464 498 0.85 14 20 0.015 20 5.8 1.4 18 29 504 515 497 526 0.78 15 20 0.0001 0.13 12.8 1.0 9 40 524 551 517 554 0.81 16 20 0.042 54 4.4 4.5 18 38 560 581 554 589 0.89 17 20 2.6 3.3e+03 -1.3 3.3 19 41 589 608 580 610 0.73 18 20 0.03 38 4.9 5.9 14 33 612 628 604 639 0.74 19 20 0.0017 2.2 8.9 1.2 5 29 632 655 628 665 0.77 20 20 0.0092 12 6.5 0.2 14 29 668 683 656 693 0.72
Sequence Information
- Coding Sequence
- ACATTGACGGGATTGAAAAGGAAAAGACGAGGGCAGATGCAAAAAGTAAATGCGCCTGTGTTAGAAATCTGTGGTGGAATGGGAGAGAGGAAAACTGCGGAACGAGTGGGAAGTTCTGATGGGGATGGGAAACCATACACGAAGAACATGTCCTCAAAGTCCACCACCTTTTGCGCGAGAAGCCTCAGAAATGACGCGCTAGGAGGCGCAAAAGGAGGGCCTTTCAATTGCAGCATCTGCAACAAGTCATTCACGCTGAGGAGCGGAGATTCATCGGAAGATACGGAATTTCGAGAAACTTCGGAAAAGGAGAGTAAAGCTGATGTCTTCTTTTGCCTTCCTCCAACGTTGCAGAGACTCAAACACCCTGCCATCTTGTGTCAACGTCAAACACCATCTCAACACGCAAAACGTTATCCGTGTACGATCTGCAGCAAGTCTTTCGCTTCGAAGTCTCACATAACTAAACACTTGCGCACACATAGGGAAGAGAAGCCTTTTTCATGTAGTGATTGCATGAAGTCTTTCTCTCTTAAAGGAAACCTCATGATGCATTTGCGCACCCACACGGGGGAGAAGCGCTTTTCGTGCAATTATTGCGCAAAGGCTTTCACTAGAAAGGACAAACTCGTCCTGCACTCGCGTGTACACACAGGGGAGAAGCCTTTTTCATGTAATTATTACTCAAAGACTTTCACTGGAAATGAGAAACTCATCCTACACTCGCGTGTACACACAGGAGAGAAGCCTTTTTCATGTAATTATTGTGCAAAGACTTTCTTTAGAAAGGACAGTCTCATCCAACACTCGCGTGTGCACACAGGAGAGAAGCCTTTTTCATGTAGTGATTGCATGAAGTCTTTCTCTCTTAAAAGCAACCTCATGACGCATTTGCGCACCCACACAGGGGAGAAGCCTTTTTCGTGCAATTATTGTGCAAAGGCTTTCACTAGAAAGGACAAACTCATCCTGCACTCGCGTGTACACACAGGAGAGAAGCCTTTTTCATGTAGCGATTGCATGAAGTCTTTCTCTCGTAAAAGCAACCTCATGACGCATTTGCGCACCCACACAGGGGAGAAGCCTTTTTCGTGCAATTATTGCGCAAAGGCTTTCACTAGAAAGGGGAAACTCATCCTACACTTGCGTGTACACACAGGAGAGAAGCCTTTTTCATGTAATTATTGTGCAAAGACTTTCACTGGAAAGGACAGCCTCATCCAACACTCGCGTGTACACACAGGAGAGAAGCCTTTTTCTTGTAATTTTTGTGCAAAGACTTTCACTGGAAAGGGGAAACTCATCCTACACTTGCGTGTACACACAGGAGAGAAGCCTTTTTCATGTAATTATTGTGCAAAGACTTTCACTGGAAAGGACAGTCTCATCCAACACTCGCGTGTACACACAGGAGAGAAGCCTTTTTCTTGCAGTGATTGCATGAAGTCTTTCTCTCTTAAACGCAACCTGATGACGCATTTGCGCACCCACACAGGGGAGAAGCCTTTTTCGTGCAATTATTGCGCAAAGGCTTTCACAAGAAAGGAGAAACTCATCCTACACGTGCATACGCACACGGAAGAAAAGCCTTTTTCGTGCAATTATTGCGCAAAGACTTTCACTGGAAAGGACAGTCTCATCCGACACTTGCGTGTACACAGAGGCAAGAGACTGTTTACATGCAAAATTTGCAGCAAGTCTTTCGCCTCGAAGTCTCACATAACTCAACACATGCGCTCACACACGGAAGAGAAACCGTATTCATGCAGTGATTGCGCTAAGTTTTTCTCCCTTAAATGCAACCTCATGAAGCATTTGCGCACCCACGCAGGGGAGAAGCGCTTTTCGTGCAATTATTGCTCAAAGGCTTACACTAGAAAGGAGAAACTCGTCCAACACGTGCATACGCACACAGGGGAGAAGCCTTTTTCGTGCAATTATTGCGCAAAGACTTTCACTAGAAAGGACAAACTCGTCCAACACACGCGTGTTCACACAGGAGAGAAGCCTTTTTCGTGCAATTATTGCGCAAAGACTTTCCCCAGAAAGGACCAACTCGTCCAACACACGCATACGCACCCTGGATAG
- Protein Sequence
- TLTGLKRKRRGQMQKVNAPVLEICGGMGERKTAERVGSSDGDGKPYTKNMSSKSTTFCARSLRNDALGGAKGGPFNCSICNKSFTLRSGDSSEDTEFRETSEKESKADVFFCLPPTLQRLKHPAILCQRQTPSQHAKRYPCTICSKSFASKSHITKHLRTHREEKPFSCSDCMKSFSLKGNLMMHLRTHTGEKRFSCNYCAKAFTRKDKLVLHSRVHTGEKPFSCNYYSKTFTGNEKLILHSRVHTGEKPFSCNYCAKTFFRKDSLIQHSRVHTGEKPFSCSDCMKSFSLKSNLMTHLRTHTGEKPFSCNYCAKAFTRKDKLILHSRVHTGEKPFSCSDCMKSFSRKSNLMTHLRTHTGEKPFSCNYCAKAFTRKGKLILHLRVHTGEKPFSCNYCAKTFTGKDSLIQHSRVHTGEKPFSCNFCAKTFTGKGKLILHLRVHTGEKPFSCNYCAKTFTGKDSLIQHSRVHTGEKPFSCSDCMKSFSLKRNLMTHLRTHTGEKPFSCNYCAKAFTRKEKLILHVHTHTEEKPFSCNYCAKTFTGKDSLIRHLRVHRGKRLFTCKICSKSFASKSHITQHMRSHTEEKPYSCSDCAKFFSLKCNLMKHLRTHAGEKRFSCNYCSKAYTRKEKLVQHVHTHTGEKPFSCNYCAKTFTRKDKLVQHTRVHTGEKPFSCNYCAKTFPRKDQLVQHTHTHPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -