maker-scaffold_828-augustus-gene-14.28-mRNA-1
Basic Information
- Insect
- Ischnura elegans
- Gene Symbol
- lola
- Assembly
- None
- Location
- scaffold:1387826-1390911[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 7.6e-05 22.9 0.0 8 41 459 493 458 496 0.89
Sequence Information
- Coding Sequence
- ATGGGATCAGAACAACAATTTTGTTTGCGATGGAACAATCATCAAAGTACCTTGATCTCTGTTTTTGACACGCTTCTCGAAAGTGAGACATTAGTAGACGTAACGTTGGCAGCTGAAGGACAGTATTTAAAAGCTCACAAAGTAGTTTTATCAGCATGCAGTCAGTATTTTCAGGAATTATTGTGCCATCACTTAGAAAAACATCCCATAATTATACTAAAAGATGTTACTTTTCAAGAATTAAAAGCATTAATAGACTATATGTATCGTGGGGAAGTGAATGTGTCTCAGGAACAACTTTCTGCTTTAATTAAAACTGCCGAGTCCCTTAAAATAAAAGGCCTTGCTGATGGAGGTGACAGAAGGCCAGACAGGAAATCAGTGCCTCAGCTATCCCCCCCTCTTCCTCCGGTACTTGGCCCAGCACTCTCTGGGAATCTATCACTTGATAACAGGTCCATGGGCGCTGGTGAATATGCCACAAATAGTCCCCTTCAACATGGCCCCAGAGAAGGAAGCATTTCCCCCGTGTCCAGAAAAAGGAAAAGAATTCGGCGTAGGTCTGGAGAAGGTGTGGCTGGCGGAGGGGCACACGAGGGAGAGGTTGGTGGTGGGTCAGAGCAGGCCTCTTCCTCTGCCTCAACTCTCTCGGTGCCAAATATCCCCGCCACCATCACCCCCGTAAACTCAGGTTCAAGGACGACACCAGGTGATGGAGATGGTGGAGATGACGAAGGAGTTGCCGGAAGCAAGTTGGATGGAGGACAAGAAGATGGAGTGCAGGGACCTGCATCGTCTAAGCAAACTAAATCCGAGCCTGGGACATCGTTGCAATCACACTCACGAACTCCTTTATTGGAACCAAAGTCAGAATACAGGGAAGAGGATGATGATGATGGTGAAGCAGATGAAGACAGCATGGACAACGTAGTTGCACTTGACGAGGATGTGATGGACATGGAAGGCAGCAGAGATGATGGGCTAGACCAGAAGGCAGGACCCTCTCACGGAGCCGAGGTGTCCGGGCAAGGATCTGGGCACTTGGGGGAGCTGTATTCATTCATTCAGCGACACGATCTGTCAGCCCCATTTGAAGTGCCACCGTTAGTCTCAATACCACCTTCACATCCATACCCCCCTCCGCCTCCTCGTCAGCTCCAGCAGCATCATCACCACCGTCAGCTCTCGGATGACTGTAACCTTGGGTTTGCCCCGCCCTCCCATATCCACCATTCCTATAGTACCACTTTCCCCGAGATACCCAACGTGCAACTCCCACGGGATGCTGTGTCAGATGGAGCATTTGAGGGCCTGCTGGCCTCTCTCTCTGAGGATGTGATGTTCCGCAAGTACTCTGTTCAGGTCGTCCGGGGTGCACTTGAAGCGGTGCTGAAGCAGGGTACTAGTGTCACTAGGGCATCTGCAGATTTTGGGATCAAAAGGTCTACTTTGCAATTTTACTTGAAGAAGATGAACATTGCCCTTCGCAAGTGA
- Protein Sequence
- MGSEQQFCLRWNNHQSTLISVFDTLLESETLVDVTLAAEGQYLKAHKVVLSACSQYFQELLCHHLEKHPIIILKDVTFQELKALIDYMYRGEVNVSQEQLSALIKTAESLKIKGLADGGDRRPDRKSVPQLSPPLPPVLGPALSGNLSLDNRSMGAGEYATNSPLQHGPREGSISPVSRKRKRIRRRSGEGVAGGGAHEGEVGGGSEQASSSASTLSVPNIPATITPVNSGSRTTPGDGDGGDDEGVAGSKLDGGQEDGVQGPASSKQTKSEPGTSLQSHSRTPLLEPKSEYREEDDDDGEADEDSMDNVVALDEDVMDMEGSRDDGLDQKAGPSHGAEVSGQGSGHLGELYSFIQRHDLSAPFEVPPLVSIPPSHPYPPPPPRQLQQHHHHRQLSDDCNLGFAPPSHIHHSYSTTFPEIPNVQLPRDAVSDGAFEGLLASLSEDVMFRKYSVQVVRGALEAVLKQGTSVTRASADFGIKRSTLQFYLKKMNIALRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00307043; iTF_01286631; iTF_01212763; iTF_01402201; iTF_01504808; iTF_00797248; iTF_00261336;
- 90% Identity
- iTF_01212763; iTF_01402201; iTF_00307043; iTF_01286631; iTF_01504808; iTF_00797248; iTF_00261336;
- 80% Identity
- -