Ipod021100.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152842.1:1845586-1861761[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.9 2.5e+02 2.7 0.5 1 10 417 426 417 439 0.86 2 11 0.002 0.17 12.7 0.8 1 23 446 469 446 469 0.93 3 11 0.15 13 6.7 0.2 1 23 473 495 473 495 0.95 4 11 0.034 2.9 8.8 1.0 1 23 500 523 500 523 0.98 5 11 0.00042 0.035 14.8 0.7 1 23 527 550 527 550 0.97 6 11 7.5 6.3e+02 1.4 0.1 3 21 564 582 563 583 0.86 7 11 0.21 17 6.3 0.2 3 23 639 660 638 660 0.96 8 11 0.0079 0.66 10.8 0.5 2 20 676 694 675 697 0.92 9 11 7.3e-06 0.00061 20.3 2.3 1 23 703 725 703 725 0.98 10 11 0.0001 0.0085 16.7 1.2 1 23 732 754 732 754 0.98 11 11 0.00022 0.018 15.7 2.9 1 23 760 783 760 783 0.95
Sequence Information
- Coding Sequence
- ATGAGGTGCAGCGTTCAAAATTGTATCAGCGACTCTAAGCGAACACCTAAAAGCCAAGGAATAACTTTCCATTTGTTCCCAAAAGAGGCGCATCTGCGCACTGCTTGGGTGGAAGCCCTCGGAATAACAGACTGGGAGCCAGGTGAACGCAGCAGCATCTGTTCCGAGCACTTCCGCAACGAAGATTTCTATGAGACCAAGTGCGGATTGAGAAAGGTCAAGAGTGGCGCGGTGCCTTTTATTGTGCAGAACACAAATGAAGACCTCGACGCGCCAGCTGTTTTAAAGGTTTGCAGGATATGCCTGGTGATGGACACCAAGCTGTACAACATTGCAGACCACAAACTGGACTTCCTATACAAAAAGCTAACAGGACTGACGGTCAACGAAAAGGACAAACTGCCGCAGAAGGTGTGCTGGGAGTGCGCGCACCGATTGTCCTCAAGCCACCGTTTTAGGAGCCGGGCTCTCCTCAGCCAGCAACTGATGGTGGCTACCCTGAAATTGAAGAAATTTATCACAGTGCGCGACGTGAGGTCAATAAACCGAGCGAAGAACGGGCTCCACAGCGCGCTCGTTCAGAAGATATTCGACGCCGACGACTGCGACCTGTCGATAAGGGAAAGCGAGCTGACCTTCAAGACGGAGCACGACTCGGGCGATGACGTCACCGACTACGCAGACGAGGACATCACGACTGACATGACAGACGACAACATGTCAGACGCCACGCTCGGCGGCCCGGGCGGTTTCATCAAGCTGGAGCACGAGGTGGCCCGCCACGTCATCGAGATGGAGGTGAAGGGGGGCTCGAACGCGATCTTCCTCAGCGAGTTCAACAATTACGACAGCGACGACAACAGGAAGCTCAGCGAGGTGTTCGCGAGGCCAAAGGGCAAGCCGAAGCGGAAGAGGCCGAAGTCGGAGCGGACCGAGAGGACGGCAAAGGTGGAGAAGACAGAGAAAACGGAGAAGACGGAGAAAACGGAGAAGACGGAGAAAACGGAGAAGACGGAGGAGACGGAGGAGACGGAGAAGATTGAGAAGAATTCGAAGGCGGCGAAGCGGAATAACGGCGAAGACAACCCTTCAACTACCATGGACAAGTACAAGGTGTCGGACGTGAAGCGGCGCAAGACCAGCGACGGCCTCGACGAGACGCTGTTCACCATCAGCAGCCTCACGTACGACGAGCAGATCGAGGAGATAGCCAAGAGGCAGGAGACGGCCGCGTACCGGAACGCGCCGTACAAGTGCACGGTCTGCTACCGCGGCTTCCAGATACGGGAGCGGCACGAGGCGCACGTGGTGCGCCACAGCGAGCAAAGCGGCGCGTACGAGTGCTTCATATGCAAGACCAGGCTGAAGACGGCGCGCGCTCTGAGGAAGCACCTCACCGCCCAGCACACGGAGAAGTTCAGCTGCAAGGGGTGCCCCTTCGTCACGAGGAACAGGGGAGTGGCGCGGGAACACGAGAGGTGGCACGCGGGCACCAAGTACCAGTGTCCGCACTGCGCCTCCGAATTCGACAAGCTCACCACGTACATGGGCCACATAAGGATAAAGCACGCGTCGGACTTCGTCTGCGAGCTCTGCGGCTACACGTTCGTCAGCAAGAAGGGGATCGAGGTCCACAAGAAGAAGAAGCACCGGCTGCACGACAAAAACGTAACCCTGGAGGGTCCTTTCTGTGACGTATGCGAGGTCCGCTTCATCTCGGAGGAGGCCCACGCACGCCACTTGAAACTATCGTCGAGGCACAGCAGCGAGAGTGATCCGAACCGAATCCGCAACGACTCGCAGAGCATGAACTCGGAGCGCGGGGGGCGGACGGTGCGCCGCATCGAGAGGCGGCCCACCGTGCACCCGCGCGCCCTCTGCGACCGCGAGCGCGCCGAGACGGGGCCCGTCGCCTGCGAACAGTGCGGCCTCCAGCTGCGCGACCTTCGCCTTTACGCGCAGCACTTCAGGCGCGCCCACCCGGACAAGAATCGAACCAAGTACCCCGCGATGAAGACGCCCTGCATGTGCGAGCAGTGCGGCCGCATATTCCAGAGCATGGCGCTGCTGAAGGACCACATGTGGGTGCACACGGGCGAGAAGCGCTTCAAGTGCTCCAGCTGCGACAAGAGCTTCACGCAGAAGAGCAACCTGGTGTTCCACCTGAGGGTGCACAGCGCGCAGCGGCCCACCTACGAGTGTCCCCTCTGCGGGAAGCAGTTCGCCTTCTTCAACAACCGCCGCCGGCACATGTTCATCCACACGGGGCTGAAGCCGTTCCGCTGCGACACGTGCGACAAGTGCTTCACCACGGCGGGCGAGCAGCGCGCCCACGTGCAGCACGTGCACCTCAAGAAGCCCTGGCCGAAGAGGGCGCGGGCGAGGCGCGAGTGGCACAAGGCGCAGATGTAG
- Protein Sequence
- MRCSVQNCISDSKRTPKSQGITFHLFPKEAHLRTAWVEALGITDWEPGERSSICSEHFRNEDFYETKCGLRKVKSGAVPFIVQNTNEDLDAPAVLKVCRICLVMDTKLYNIADHKLDFLYKKLTGLTVNEKDKLPQKVCWECAHRLSSSHRFRSRALLSQQLMVATLKLKKFITVRDVRSINRAKNGLHSALVQKIFDADDCDLSIRESELTFKTEHDSGDDVTDYADEDITTDMTDDNMSDATLGGPGGFIKLEHEVARHVIEMEVKGGSNAIFLSEFNNYDSDDNRKLSEVFARPKGKPKRKRPKSERTERTAKVEKTEKTEKTEKTEKTEKTEKTEETEETEKIEKNSKAAKRNNGEDNPSTTMDKYKVSDVKRRKTSDGLDETLFTISSLTYDEQIEEIAKRQETAAYRNAPYKCTVCYRGFQIRERHEAHVVRHSEQSGAYECFICKTRLKTARALRKHLTAQHTEKFSCKGCPFVTRNRGVAREHERWHAGTKYQCPHCASEFDKLTTYMGHIRIKHASDFVCELCGYTFVSKKGIEVHKKKKHRLHDKNVTLEGPFCDVCEVRFISEEAHARHLKLSSRHSSESDPNRIRNDSQSMNSERGGRTVRRIERRPTVHPRALCDRERAETGPVACEQCGLQLRDLRLYAQHFRRAHPDKNRTKYPAMKTPCMCEQCGRIFQSMALLKDHMWVHTGEKRFKCSSCDKSFTQKSNLVFHLRVHSAQRPTYECPLCGKQFAFFNNRRRHMFIHTGLKPFRCDTCDKCFTTAGEQRAHVQHVHLKKPWPKRARARREWHKAQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00840354;
- 90% Identity
- iTF_00840354;
- 80% Identity
- iTF_00840354;