Ipod007702.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152821.1:3731134-3740133[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.96 10.3 2.4 2 21 78 97 77 98 0.94 2 12 0.062 5.2 8.0 0.6 3 23 131 151 129 151 0.95 3 12 2.2 1.8e+02 3.1 0.0 2 23 158 179 157 179 0.94 4 12 0.1 8.4 7.3 3.5 3 23 193 214 192 214 0.95 5 12 0.54 45 5.0 2.4 3 23 222 242 221 242 0.96 6 12 0.48 40 5.2 1.5 1 23 247 269 247 269 0.86 7 12 4.2e-07 3.6e-05 24.2 0.2 3 23 277 298 275 298 0.96 8 12 0.0001 0.0085 16.7 2.8 2 21 304 323 303 324 0.95 9 12 6.5e-05 0.0054 17.4 0.3 1 23 331 353 331 353 0.93 10 12 0.0001 0.0085 16.8 0.9 1 23 359 381 359 381 0.96 11 12 2.8e-06 0.00024 21.6 3.2 1 23 387 409 387 409 0.97 12 12 0.00082 0.068 13.9 5.9 1 23 415 438 415 438 0.95
Sequence Information
- Coding Sequence
- ATGTGCTCATGCAAGTTGTCAGACGATCTACCAGAAGATTCAAGTACCTCACATGACAATTCCTTGAATGATGATGTTGAAACGTCCGAAGATGAAAATGATCATAGAGAAAGAACGGACTCTGCACCTAAGTATAAGAGATATCAGGAATTGGACTTACGAAATGTGATCATTAAATATAAACAAGAAAACTATGATAGCTGTGAGAACGAAGGCTTGGTTAAAGTTTTGGAGTGCAGCAAATGTAAAAAACAATACCAAAAAGCCAAATGCCTGATTAAGCATATGATGCAATCATGTTACAATCACGTGGATGTTAATAAACTAGTGTTAGTGAGAAAATTTAGAACACCAATTTCCGTAGACGAGAACACAGACATTGAATTATTTTGTGGTATATGCGAGTTCGCGTCAGCCAGTCGCGACGATATGAAGAAACATTTGCATGAGCATTGGATGGAAAACGATATGCGATGCAAGTTATGCGCCTATGTTGGGAAAGACATCGCTGAGTTGATTGGACATAGGTCTCTCCACCAACCTTACGAGTTCTTCTCGAAGATGGAGAACCGCGCCTGTCACATTTGCAACAAGAGGTGTGCCACGCCCATGAGGTTGCAGTTCCACTATAGATCGGTGCACCTGAACAGGAGTGGTGGTCTTTGCACCGTCTGCCGCAAAGCGTTCAGATGCTACACCGCTTGGCGGAATCACGAGAGGCTGCATGAGGGCGGCAAGTATATCTGCGACCTCTGCGGAAATAAATTCCTATTCCGCCACCAAATAAAGACCCATCTCGCCGAGCATTCGAATGTCAGGGGCTCCATTTGCGACGTATGCGGGAAGGGATTTAAGCGAGCGTCGTATTTAAAGGAGCATCTGAACACCGTCCACACGGTGGAGCCGGTCCAGTGCCCTCACTGCGGCAAAACCTTCAAATGCCCCGCGAACCTGAAAGAGCACTTAAAGCATGTCGGCAAGGCGAGACACTTCCAGTGCGAGGTCTGCGCCAAGCGCTTCACCTCCGCGGCCTCCCTCAAAAGTCACGCCTTCTGGCACACCGGCGAGAGGCCGCACGCGTGCGAAAGCTGCGGCGCCCGCTATAAGGCGAAGGCGCAGCTCAAGATCCACATGAGGAAGCACACCGGCCAACGGCCGTACAGATGCCACCTGTGCGACAAGTGCTTCCCGACTGCGGTGCAGTTGAAGCGGCACGGCAGCGTGCACACGGGCGACCGACCGTACAAGTGCTCGTACTGCCCCCGCTCGTTCCACTACAAGAAGTTGCTGGTGCACCACACCGCATCCAAGCACGGCCGCGTAAGGCCCGAATAA
- Protein Sequence
- MCSCKLSDDLPEDSSTSHDNSLNDDVETSEDENDHRERTDSAPKYKRYQELDLRNVIIKYKQENYDSCENEGLVKVLECSKCKKQYQKAKCLIKHMMQSCYNHVDVNKLVLVRKFRTPISVDENTDIELFCGICEFASASRDDMKKHLHEHWMENDMRCKLCAYVGKDIAELIGHRSLHQPYEFFSKMENRACHICNKRCATPMRLQFHYRSVHLNRSGGLCTVCRKAFRCYTAWRNHERLHEGGKYICDLCGNKFLFRHQIKTHLAEHSNVRGSICDVCGKGFKRASYLKEHLNTVHTVEPVQCPHCGKTFKCPANLKEHLKHVGKARHFQCEVCAKRFTSAASLKSHAFWHTGERPHACESCGARYKAKAQLKIHMRKHTGQRPYRCHLCDKCFPTAVQLKRHGSVHTGDRPYKCSYCPRSFHYKKLLVHHTASKHGRVRPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -