Ipod015531.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152831.1:11795223-11805440[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 0.98 10.3 2.8 1 23 318 340 318 340 0.97 2 11 0.00039 0.033 14.9 2.6 2 23 348 369 347 369 0.95 3 11 0.049 4.1 8.3 0.5 1 23 373 395 373 395 0.97 4 11 0.0011 0.091 13.5 0.9 1 23 400 423 400 423 0.98 5 11 0.039 3.2 8.6 0.2 1 23 427 450 427 450 0.93 6 11 0.014 1.1 10.1 0.1 2 21 622 641 622 646 0.92 7 11 0.00046 0.039 14.7 0.6 3 23 656 677 656 677 0.98 8 11 0.17 14 6.6 0.5 2 23 697 719 696 719 0.96 9 11 9.1e-06 0.00076 20.0 0.5 1 23 730 752 730 752 0.98 10 11 1.3e-06 0.00011 22.7 1.4 1 23 758 780 758 780 0.99 11 11 1.4e-05 0.0012 19.4 0.2 1 23 814 837 814 837 0.98
Sequence Information
- Coding Sequence
- ATGGATCACATCAAAGTGTGTCGAATATGTCTCGTAATGGATGTGAAGATGCACAATCTCCAATCTTATCCTCTAGGGACATATTTTGAACCAATAACAGGAATGAATCCATTAAATATGACAGATTTGCCACCCTTCGCTTGTTATGAATGTGCCATGTTAGTAAAGAAGTTTTATTTCTTTCGTGAGCGATGTTTAAGAGGACAAGCTGCTCTCTATGGAATATATCATTCTTCCGGGAAGATTACAACAGAAGATATTCAACAAATAGACAGGAAATACTTCCACCTGACTTCAAATTTGTCTATATGCAACAAGAAAAGAAATAAAGAATTTAATTTTACTTATGATGAAATGAAAAATGAGAAATATGTAAAAGAGGAACCATTTGAACAAACTGAATTTCTAATTCAAACTGAAAGTTTAGATCACTCTGAAAATATAGGGGAAAGTCTGGGAAATTATGATGAAGAAATAGATGACCTTAAAGGTGATGAAAATTTTGATGACATCCAACATCTTTCTACACTATCTAGTGATGACAATGAACCTCTATCTCTTCATAAAAATAATAAGGAAAAGAAACTTAAAAAGAAGATTGTAAAGAAGAAAATAAGGAAAACACAGAAGAAAGAGGAATCTGAAGTAAATCTTTCATTAGACAATAGATCTGATGAAGCTTCCAATTTTATTGAGGGTACCGATGACAACTCAACTTTGCCCGTAGAAGTGACAGAGGTTGTTAAAAGCAAACGCAAGAGAGGCCGGCCCAGGAAGAATGATGCAGCTCCCTCAGAGGCTGTGGAACGAAAGGGCAGGGGAAGAAAAAGTGCTGTTGATGATGATGAAATGGATATGGAGGAATATGTCACAATTATAAAACTATCGGTGGAGCAACAGATAGAGGAGATAACGAAACGGCAGCACTCCTCCAACTACCTGAATGCTCCGTACCAGTGCAACCTGTGCTTCAAGGGCTTTATAGACACGCATGCATGGAAGCACCACGTCGGGAGGCACGATCCGAGCTCCGGTGACCTGCAGTGTCCGATCTGCAAGTTCCGCTTCAAGACGAAGCGAACGATGCAGAAGCACGTCACTAACCACGAGAAGAAATACGCCTGCAAGGCGTGCCCCTACGTCTCGAAGACCACGACACAAGCGAAGCAGCACCAGAGGTGGCACAAAGGCGTCACGTACAAGTGCCAGTACTGCGATGAGATATCGACCAAGTGGACTTCGTACCTGAGCCACGTGCGCATCAAGCACCCGTCGCAGCACATCTGCGGCGCGTGCGGCTACTCCTTCGTCAGCCGGCTGGGGCTCGCCATGCACCGCACCATGATGCACAAGGACCTGCCGCCACATTGCCCCTCCTCCACACCCCTCATCGCTCCCATTGCGTATCCGCCATTCTCCCCATTGCCCCTCCTCCACACCCCTCATCGCTCCCATTGCGTATCCGCCATTCTAGCCCCATTGCCCCTCCTCCACACCCCTCATCGCTCCCATTGCGTATCCGCCATTCTAGCCCCATTGCCCCGCCTCCACACCCCTCATCGCTCCCATTGCGTATCCGCCATTCTAGCCACATTGCCCCTCCTCCACACCCCTCATCGCTCCCATTGCGTATCCGCCATTCTAGCCCCATTGCCCCGCCTCCACACCCCTCATCGCTCCCATTGCGTATCCGCCATTCTAGCCACATTGCCCCTCCTCCACACCCCTCATCGCTCCCATTGCGTATCCGCCATTCTAGCCCCATTGCCCCTCCTCCACACCCCTCATCGCTCCCATTGCGTACGGAACCCTAAAAACAGAGGGGAGCAACAGCAGGACGGAGACAACAAGGAAGAAGGTCCTTATTGCGAGCAGTGCGACATAAAGTTCGTGTCGGTGGAGGCGTGGAAGCGGCACATGGTCACATCCGTCAAGCACACGCAGAGTACCGACTTCAACACCGGCTGCCGCGTGTGCGGCGAGACGTTCGGCAGCGCGGAGGAGCTGCGGCTGCACCACAGGAGCGAGCACGCCAGGAAGCGGCCCAAAAACTACGGCAAGAAGCCCTCCAGCATGGCCTGGCCCACCGAGTGCGAGCATTGTTCGGAGGAGATCGCCAATGCCCGCGACTACTGGACGCACTTCAGGCGCGTGCATCCCGACAAGAACTACCCCATCCAGAAGAACTACATCTGCGACATTTGCGGCAAGAGTTTCCGGGGCAACGCGTTCCTCGTGTACCACAAGCGCACGCACTCGGAGGAGCGCGCGTACAAGTGCGCGCAGTGCGGCAAGGCGTTCTTCAACCGCACCAACCTGCAGATGCACGAGCGCACGCACTCGGACCTCAGGCCGCACCCCTGCGCCCTCTGCTGCAAGGCCTTCAAGTGCAAGGGCGCGCTCGACCGCCACTCGAGGAGCCACACGGGCGTGAAGCCGTACGAGTGCGAGGTTTGCGGCAAGGCGTTCGCGCAGTCCAACAGCCGAAAGCTGCACGTGCGCACCGTTCACCTCAAGCAGCCGTCGCCATACATCAGCCGCAGCCGCCTGGAGAGGCGCAACCGACTCGCGAACCAGATCTACTGA
- Protein Sequence
- MDHIKVCRICLVMDVKMHNLQSYPLGTYFEPITGMNPLNMTDLPPFACYECAMLVKKFYFFRERCLRGQAALYGIYHSSGKITTEDIQQIDRKYFHLTSNLSICNKKRNKEFNFTYDEMKNEKYVKEEPFEQTEFLIQTESLDHSENIGESLGNYDEEIDDLKGDENFDDIQHLSTLSSDDNEPLSLHKNNKEKKLKKKIVKKKIRKTQKKEESEVNLSLDNRSDEASNFIEGTDDNSTLPVEVTEVVKSKRKRGRPRKNDAAPSEAVERKGRGRKSAVDDDEMDMEEYVTIIKLSVEQQIEEITKRQHSSNYLNAPYQCNLCFKGFIDTHAWKHHVGRHDPSSGDLQCPICKFRFKTKRTMQKHVTNHEKKYACKACPYVSKTTTQAKQHQRWHKGVTYKCQYCDEISTKWTSYLSHVRIKHPSQHICGACGYSFVSRLGLAMHRTMMHKDLPPHCPSSTPLIAPIAYPPFSPLPLLHTPHRSHCVSAILAPLPLLHTPHRSHCVSAILAPLPRLHTPHRSHCVSAILATLPLLHTPHRSHCVSAILAPLPRLHTPHRSHCVSAILATLPLLHTPHRSHCVSAILAPLPLLHTPHRSHCVRNPKNRGEQQQDGDNKEEGPYCEQCDIKFVSVEAWKRHMVTSVKHTQSTDFNTGCRVCGETFGSAEELRLHHRSEHARKRPKNYGKKPSSMAWPTECEHCSEEIANARDYWTHFRRVHPDKNYPIQKNYICDICGKSFRGNAFLVYHKRTHSEERAYKCAQCGKAFFNRTNLQMHERTHSDLRPHPCALCCKAFKCKGALDRHSRSHTGVKPYECEVCGKAFAQSNSRKLHVRTVHLKQPSPYISRSRLERRNRLANQIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -