Basic Information

Insect: Iphiclides podalirius
Gene Symbol: -
Assembly: GCA_933534255.1
Location: OW152835.1:1352837-1357686[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.048 4 8.3 3.2 1 23 405 427 405 427 0.98

2 9 2.2e-06 0.00018 22.0 0.9 1 23 474 497 474 497 0.97

3 9 0.07 5.8 7.8 0.0 3 23 504 524 503 524 0.96

4 9 3.1e-06 0.00026 21.5 3.7 1 23 530 552 530 552 0.98

5 9 2.4e-05 0.002 18.7 0.4 3 23 559 579 558 579 0.99

6 9 1.9e-05 0.0016 19.0 2.1 1 23 588 610 588 610 0.98

7 9 2.8e-06 0.00024 21.6 0.8 1 23 616 639 616 639 0.94

8 9 0.032 2.7 8.9 0.7 1 22 645 666 645 668 0.76

9 9 0.032 2.7 8.9 2.4 1 23 676 699 676 699 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.048	4	8.3	3.2	1	23	405	427	405	427	0.98
2	9	2.2e-06	0.00018	22.0	0.9	1	23	474	497	474	497	0.97
3	9	0.07	5.8	7.8	0.0	3	23	504	524	503	524	0.96
4	9	3.1e-06	0.00026	21.5	3.7	1	23	530	552	530	552	0.98
5	9	2.4e-05	0.002	18.7	0.4	3	23	559	579	558	579	0.99
6	9	1.9e-05	0.0016	19.0	2.1	1	23	588	610	588	610	0.98
7	9	2.8e-06	0.00024	21.6	0.8	1	23	616	639	616	639	0.94
8	9	0.032	2.7	8.9	0.7	1	22	645	666	645	668	0.76
9	9	0.032	2.7	8.9	2.4	1	23	676	699	676	699	0.96

Sequence Information

Coding Sequence: ATGCTGCACAACAGCGGTCCTTTTGGACCTAACGAGGTGCCGATCAACATGGGCGCGCCAGTAAACATGACCCCGATGACTGGAGCAATGAACATTGCGAATAACATTAGTAATTTGGCCAAAATCGGTCAACCACCCCCGGAGCCGTCTAACGCGCACTATCCCGTACCAAGCTATTCAACTTACGGGCATCCACATCTGAATATGAATGCAGGCATGAGTCCGTTTCATAACTATCCTTCTATTGGCTTTCAACCGAGCTATATGTCACAAAGTCCAGCGCCAGTTCACGATACAAATTGGCAAAATGGTATGTTGCCGATTAGCTTGAATATGCACAACAACGATAATACTACGATTAACTATTCCACGTCTGCAAATAAACGATCTGAAGCTTACAGTGAATATAAAGACCATCATCTAAATAGTAAAGTACCATTGAATGTGCCTCAAGTGCACACTAAAGCATTCCATAAACACCTCAGCATGGAGAACAATTACAATCATTATCCACCTTACAGCCCACATCAGAGTAGCTTTAGGCACTATGCTGACTGTAATCTAGATTTGAGCACTAAGTCAAAACTAGAAATGGACCCAAGACGCAAAAGTTTAGAAACAACTGTCAAGTTAATTGAAAATATTCTTATTAACAGCACCAGAAAGAATGATAGTCATACTAGTAAGGAAAGTATTAACAACTCTTATGTAAGTCAAAAGCAGTCAGATCCTAGAGTCCCATCATGCACAAATGATGTTGATCCCCTTAAACCTAGTACTGCTAAATTACCTGAACAAACTAAGCCATATAATCTTGACATAGACAGCAGGGATAGTGATTCTGTTGATGAAGTGAGAGCAGAGAGTGTAATGGAAGATAACAGCACCACTGAATCATTGATCCAGAAAGAAACCTTACCAGAATCTCCTAAAGAAGCAGAGACGGATAATGGTTCATCAGATTTAGAAAATGATGCCAAACCTGAAGACCTTACTGCCAATTCGGTGAAAGAAGAACCTCAGGTGAACACGGGTGTTGAAGTTAAAGTGGAGCAAACAAGCTGGGTTGACTCTGAATCATTTAACCCATTCCAAAGAGATATTAATGGCATGCCAATGGAAGATACAATCAATGCCAATGTAGTTCATGGTGATCAAAGTGTTGAAGAAGCAACAGAGAATATTAAAAATGGCTCGCAAGAGGATAAGCATTATGAATGTCCAAATTGTAACCTGCTTTTCAACCATCCCAAGAGGTTCCTAATACACCATAAGTGGCATTCATTTGGTCTTACAACTGTCAAAAAGCTGGAGTTAGCCAGAGAGAAGGAATTGAGAAAATCTCTGCGAAGAGAAGCAAGAGTTGTTCAACGAATGAATTTACATGAGGTGAAAGATATGAGTACCGCTGGCAAGAAGTATCCCTGTAAAGACTGCGATAAAGTCTTCAGTGCACGGGGGAGTTTGAAGAACCATAGGCAAAGATACCATCCTACACGAGTGAGAGACTGCAAAATCTGTGGAAAGGTTGTCCTGGGTTGGATAGCGCTCCGGGCGCACGTGGCCACGCACACCACGGATTCCGGCTATCAGTGCAGTGACTGCCCGAAACGGTTCAAATACTCGCACTCATTGGCGAAGCACCGCGACACACATTTAGAGAAAACTCACGGGTGTGAGCAGTGCCCAAAGATGTTCGGCTCGGCTAAACTGTTGAAAATGCACATGAAAACGCACGAGCGCGTCCTACGTGGAACCACCTTCCACTGTACCTACTGCGGGAAAGGATTCTTCGAGGCATACAGCTTGCAGGTCCACGAGCGTACGCACAGGAACGAGCGGCCTTTCCTATGCGAGATCTGCAACACCAGCTTCGGAACAAACTCCAGCCTCAAGAGGCATTTGAAAGTGTCACACAGCACTTCGAAGCCGTTCGAATGCCCCACCTGCCACCGGTCATTCGTGTCGGAGGTGATCAGGGAGCGACACGAACAGCGCGTGCACGGAGACCCAGACAGCTTCAAGTTCCCTTGCAACCAGTGCCCATGCAGATATCTGAAAGCTAAGGACCTAAGAAAGCACATGTACAAAGCTCATCCAAAGGGCAAACGAAAGAAGAAAGTGCAGAGTGACAGCGAATAA
Protein Sequence: MLHNSGPFGPNEVPINMGAPVNMTPMTGAMNIANNISNLAKIGQPPPEPSNAHYPVPSYSTYGHPHLNMNAGMSPFHNYPSIGFQPSYMSQSPAPVHDTNWQNGMLPISLNMHNNDNTTINYSTSANKRSEAYSEYKDHHLNSKVPLNVPQVHTKAFHKHLSMENNYNHYPPYSPHQSSFRHYADCNLDLSTKSKLEMDPRRKSLETTVKLIENILINSTRKNDSHTSKESINNSYVSQKQSDPRVPSCTNDVDPLKPSTAKLPEQTKPYNLDIDSRDSDSVDEVRAESVMEDNSTTESLIQKETLPESPKEAETDNGSSDLENDAKPEDLTANSVKEEPQVNTGVEVKVEQTSWVDSESFNPFQRDINGMPMEDTINANVVHGDQSVEEATENIKNGSQEDKHYECPNCNLLFNHPKRFLIHHKWHSFGLTTVKKLELAREKELRKSLRREARVVQRMNLHEVKDMSTAGKKYPCKDCDKVFSARGSLKNHRQRYHPTRVRDCKICGKVVLGWIALRAHVATHTTDSGYQCSDCPKRFKYSHSLAKHRDTHLEKTHGCEQCPKMFGSAKLLKMHMKTHERVLRGTTFHCTYCGKGFFEAYSLQVHERTHRNERPFLCEICNTSFGTNSSLKRHLKVSHSTSKPFECPTCHRSFVSEVIRERHEQRVHGDPDSFKFPCNQCPCRYLKAKDLRKHMYKAHPKGKRKKKVQSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00856060;
90% Identity: -
80% Identity: -