Ipod020590.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152841.1:2539934-2544919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 0.089 13.5 1.6 1 23 248 270 248 270 0.98 2 10 0.15 13 6.7 0.0 3 23 295 316 293 316 0.91 3 10 9.6e-05 0.008 16.8 0.1 3 23 339 359 337 359 0.94 4 10 0.0011 0.091 13.5 0.9 1 23 363 385 363 385 0.98 5 10 0.0055 0.46 11.3 0.3 1 23 392 415 392 415 0.95 6 10 7.7 6.4e+02 1.4 0.1 3 23 423 444 421 444 0.82 7 10 4.7e-05 0.0039 17.8 1.7 1 23 450 473 450 473 0.97 8 10 9.9e-05 0.0083 16.8 1.3 1 23 479 501 479 501 0.98 9 10 2.6e-06 0.00022 21.8 1.0 1 23 507 529 507 529 0.99 10 10 1.8e-05 0.0015 19.1 3.4 1 23 535 557 535 558 0.96
Sequence Information
- Coding Sequence
- ATGGCTGTTACAATAATTACAAAGAGCAACAAAGGACCGATTGTAGATCCCGGTTTATGCCGATGCTGTCGTTCGATTAAGAAATGTCGTTTCCTGTCTTCGGAGTACGAATGGATGGGCAACAAGGAGGTGTATTCAGATATGCTAATGGATTGCTTTGGATTATTACTGTCCCATATGGATGGTGACAACAAAGACAGCTGCATTTGCGCCACATGCGTGTCCCGTCTCCGCGAGGCATGCGCCTTCCGCCAGCAGGTTCTGCAGTCTGAAGAGGTGTTCCTCAAGGCCAAGCTAGAAGACCACAAAGATGGCGAATCCAAAACCCTGATCGAGGTCAAGACGGAGCCAATGGACGATATGATATCCGATGCCTATATGGATGAAGGCGACTCGAGTGGCGAACGGAACGGTACAATTTCCAACGTGTGGTATCACCACGTGCCAATTTCAGACACAAAACCGCCGGACATCGCGAGTCTAGTGCAAAGGGCGCCGGTGGTCGCGAGGCGGCGCTCCCTCCGCACCAAACACGTGACGGAGCCCTCGGCGGTGAGGGGAATGAGGAAGCTGCGCTCGAAGATGGACAGAATGCTGGATATGCCGGAGAAACGGAGGAAGAAAGTGCTGGCCAGCAAACCCAAGAAGCAGACGGACGACCACGAGCAGATGGCGTATGCCaacacggtggcgattgtccagaactcttatgtgtgcccgttcctcaaccgcgtgagcaactactactgctactactgcaaggaccagttcaccaaccccaacgagctgagggagcacacgctcacccacgaccccaaggagatgttcgagaacatgacggagggcaggaagctgcccaagatcgacatcacgcggatcgactgccgcctgtgcccgcagaagatagaagacctggacgccctcaagcggcatctcaccgccgcccacgggaaacccctccacccggtcgccaacgagttcctgaagttcaggctctccctgaacagcctcgcgtgcaccgagtgcggcaccgcgttcccctacttcgacatgctgaagaagcacatggtggagcacttcggcacgttcatatgcgacgtgtgcggcgcctgcttcctcgagcagaactcgcttcgcacccacatcaagtcgcacagccgcgtcgaggcgagcttcccgtgcgaggtgtgcgggaagaacctcaagtcgaagtacagccggtacctccacgtggcgaccgtccacgagaagaagccgacggtgaactgctacaagtgcgaggcgagcttcctctcgtacgcgctgcgcaacaggcacctgatcgaggcgcacggcgacgcgcgcacgttcccgtgcaagctgtgcgacaaggtgtacaaccgccgcaagaccctgatggagcacaaccggcggaaccacctgaaggtgtaccgccaccagtgcgagctgtgcgaccagcgcttctacctgccgtcgaggctgaaggagcacatggcgacacacacgggcgagaggggcttccgctgcgagtactgcgagaagagctacccgcggctccagtcgctgcaggagcacctgcgctcccacggggcggagcgccgccacaaatgcgacctctgcagcgccaccttcgcccagagctccgccctcaagagccacctgaagactcaccaccgggaCTTCGCAGAGGACGCCTTCACTTGA
- Protein Sequence
- MAVTIITKSNKGPIVDPGLCRCCRSIKKCRFLSSEYEWMGNKEVYSDMLMDCFGLLLSHMDGDNKDSCICATCVSRLREACAFRQQVLQSEEVFLKAKLEDHKDGESKTLIEVKTEPMDDMISDAYMDEGDSSGERNGTISNVWYHHVPISDTKPPDIASLVQRAPVVARRRSLRTKHVTEPSAVRGMRKLRSKMDRMLDMPEKRRKKVLASKPKKQTDDHEQMAYANTVAIVQNSYVCPFLNRVSNYYCYYCKDQFTNPNELREHTLTHDPKEMFENMTEGRKLPKIDITRIDCRLCPQKIEDLDALKRHLTAAHGKPLHPVANEFLKFRLSLNSLACTECGTAFPYFDMLKKHMVEHFGTFICDVCGACFLEQNSLRTHIKSHSRVEASFPCEVCGKNLKSKYSRYLHVATVHEKKPTVNCYKCEASFLSYALRNRHLIEAHGDARTFPCKLCDKVYNRRKTLMEHNRRNHLKVYRHQCELCDQRFYLPSRLKEHMATHTGERGFRCEYCEKSYPRLQSLQEHLRSHGAERRHKCDLCSATFAQSSALKSHLKTHHRDFAEDAFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -