Ipod014611.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152830.1:6558979-6572184[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00031 0.026 15.2 0.2 2 23 140 161 139 161 0.93 2 10 0.00045 0.038 14.7 2.4 1 23 167 189 167 189 0.96 3 10 0.00011 0.009 16.7 0.6 1 23 283 305 283 305 0.98 4 10 0.0024 0.2 12.4 0.0 3 23 382 403 380 403 0.90 5 10 0.0018 0.15 12.8 0.2 1 23 418 440 418 440 0.93 6 10 7.4e-06 0.00062 20.3 0.2 1 23 470 492 470 492 0.98 7 10 0.00049 0.041 14.6 0.2 1 23 498 520 498 520 0.97 8 10 0.00027 0.023 15.4 0.3 1 23 526 548 526 549 0.95 9 10 0.013 1.1 10.1 1.2 1 23 562 584 562 584 0.96 10 10 0.0048 0.4 11.5 0.1 1 20 752 771 752 774 0.93
Sequence Information
- Coding Sequence
- ATGGAACCATCAGCAGAGGATTTTAATCTCCATTGGGAGGAAGTTGTTATAAAGAATTCTCCTAAACATGAAGTTCAAGAAATATGTGACCTTGCAGGAGTGCAGTCTGTATCATATTCTGGAATGACGTCTGAAGAAATGATAGCTGATACAGATCAAATGGCAGCAGAAAATTTAATGTATTTATCACAGGATGTTGTTGGATATACTGAAGCAACAGAATTGACTGATGATTTAAATGTTGAATGTGTGACTGAGGAAGTCATAACTGATGACTGGGTCATAGCAGGTGGTCAGGAAAGAGTGGAAGTACCATTGGAACATTTAGCAAACAGTGTTTCTGATGTTAAAGTTGAAAATGATATTGATGTTCCATTACCAACTGATCAAGACGAGTACACGGCGATGCGGCCGTGGCCGTGCGACTTCTGCTCGCGCCGCTTCCGAAAGAAGGCGGCGCTGATGAACCACATGGTGGCGCACCAGAGCGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGCGACCTCATGAACCATCTCAAGGTGCACGCGTTCGTGCCCGAGCACGGCGACACCATGGACTACGATGATGTCCTACCTGAAAAAACCCAATTGATTAAACCAAAGAAAAAGCGCGGTCGTCGGAAAAAGAATCCGGAACCCGTTGAGAACGGCGTGTGGGAGAACATGACGTCGGCGCGCACGCAGCAGTGGCAGAGGCGGGCGCGCACCCCCGCGCCCCGCTCCCCCTCCCCCGCCTCCGAGCCGGAGCCGCCCCCTCCCCCGGCGCCCCCCACCCCTCCACCCCCGGCGGACCCATCTCGCCCCTTCGTCTGCCGCCACTGCGGCGTCGGATTTGCACGGGAGAAGGCGCTGCAATCGCACTCCAGGATCCACGGCGGCGACTCGCCGGTGGAGTGCGGTGAGTGCGGCGAGCTGTGCTGGTCCCGCGAGGCGCTCAGCTCGCACACGGCCCACCGCCACCCGCACGCCGCGCCGCGAACTCACCGCGAGCCCTCCTACGACGAGTCCAACTCTGGCGACGACATGGACTTCCGCCTGTCGCCGATAACGCAGGGCGGTGACCGTGGCATGTTCGACAACGTGCGCGGCCCCGAACTCTTCTGCCAGGACTGCGGCGTCGCCTTCCAGCGCGTCGATTTGCTGAGGCGGCACGTCGCCGCCGCGCACAGCTATAAGCGACACGATAGCACGAGCAGTACCTGGGCGGAGCACACGTGTGACGTGTGCGGCGAAAGTTGCACGGACGCGCTGCAGCTGCTGGCGCACGCGGAGGGTCACGCGGAGCGGCATCGACCCGCCGCGCCCAGACTGAAGAGGCACGGTCGTGGTCGGAACAACACGACGTCAACGAGCAATTCAAGGCAGTTCCCCTGCAGAGAATGCGGCAAAGTGTTCGGTTCGCGCAGCTCGCAGCAGATCCACATTAGGATCCACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGCTGGAAGGCGTTTGCCGACGGCGGCACCCTGCGGAAACACGAGCGAATACACACGGGCGAGAAGCCGTACGCGTGCGCAGTGTGTCCGCGCGCGTTCAACCAACGAGTGGTGCTCCGCGAGCACGTGCGATCCCACCACTCCGCGCCCGACCGTCGTGCCAACGGTGGAAATGCGTATTGTTGCGTGGTGTGCGGCAGGACTCTTCATTCCAGTGTAGAGCTTGTTCAACATTTGATACAGCACTGTGACGCCAACACGGCACTAAAAAGACAACCACAGAACGGTCCGCGCAAGTACAAGCGGCGGCGGAAACTGAAGGCCGAGATGGCGTCGCCGAAGCGCGAGTGGGAGGGGCGCGGGGAGCGGGGCTCGTCGCCGTCGGGCGCGTCCGTCGCTTCGAACGCGTCGCGGGCGTCTGAGCGGTTGAGCGCCGCGTCTACCCCGCACCGCGCCCCCTCACCGCCCCGTCGCGCCCCCTCACCGCCCCGGCGCAGAAGACGCCGCGCGCCCCCCGCACCGCCCCGTCCCCGCATGATACACACCGAGGAGCCACGCCCGAGGACTAAACAGGTGCGCAGCAGGCGTCCTCCGCGGCATCCGGCGGACGACTTGCGCGCGATCGCGACGCACTCCGCGTCGCCGGGGCCCGCTTCCCCCTCACCCCCGTCCCCTTCCTCCCCAAATTCGCCACCTTCACCCGCCTCCCCGCCCTCCCCCTCATCGCCGCAGTCCCCCACCGGCCCTTACAAATGCGAAATGTGCTCCCTCGAGTTCCCCCGGCGTGATGCTCTATTACTACATGTACCCGTCCATATATGA
- Protein Sequence
- MEPSAEDFNLHWEEVVIKNSPKHEVQEICDLAGVQSVSYSGMTSEEMIADTDQMAAENLMYLSQDVVGYTEATELTDDLNVECVTEEVITDDWVIAGGQERVEVPLEHLANSVSDVKVENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQSDRPHACNLCGVRYVRKCDLMNHLKVHAFVPEHGDTMDYDDVLPEKTQLIKPKKKRGRRKKNPEPVENGVWENMTSARTQQWQRRARTPAPRSPSPASEPEPPPPPAPPTPPPPADPSRPFVCRHCGVGFAREKALQSHSRIHGGDSPVECGECGELCWSREALSSHTAHRHPHAAPRTHREPSYDESNSGDDMDFRLSPITQGGDRGMFDNVRGPELFCQDCGVAFQRVDLLRRHVAAAHSYKRHDSTSSTWAEHTCDVCGESCTDALQLLAHAEGHAERHRPAAPRLKRHGRGRNNTTSTSNSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGNAYCCVVCGRTLHSSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKLKAEMASPKREWEGRGERGSSPSGASVASNASRASERLSAASTPHRAPSPPRRAPSPPRRRRRRAPPAPPRPRMIHTEEPRPRTKQVRSRRPPRHPADDLRAIATHSASPGPASPSPPSPSSPNSPPSPASPPSPSSPQSPTGPYKCEMCSLEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00958137;
- 90% Identity
- -
- 80% Identity
- -