Ipod021162.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152842.1:2782349-2793336[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.3e-05 0.0044 17.6 2.9 1 23 61 83 61 83 0.98 2 11 1.4 1.2e+02 3.7 0.1 1 23 90 112 90 112 0.92 3 11 0.24 20 6.1 0.3 1 23 116 139 116 139 0.94 4 11 0.024 2 9.3 4.9 1 23 146 168 146 169 0.96 5 11 5.6e-07 4.7e-05 23.8 0.3 2 23 175 196 175 196 0.97 6 11 1.4e-05 0.0011 19.5 2.6 1 23 202 224 202 224 0.99 7 11 8e-05 0.0067 17.1 2.3 1 22 230 251 230 255 0.93 8 11 0.00048 0.04 14.6 2.2 1 23 263 286 263 286 0.96 9 11 0.00051 0.043 14.5 0.2 1 23 292 315 292 315 0.95 10 11 3.8e-06 0.00032 21.2 1.0 1 23 324 346 324 346 0.98 11 11 1.1e-05 0.00091 19.8 0.4 1 23 352 375 352 375 0.96
Sequence Information
- Coding Sequence
- ATGCGTGTCCACAGCGCAGAAGCAACAGGCGAGGGTCAAGAAGAGAAGAAGCCAGAACGGAAGACCTCCATTAGGAAACCGGTGGAACTGGACCCGACGAAGATCAGGATAGTCGTGTTAAACCCCGAAGAGCAGATCAAACAGAGAGAGGAAGAGAGCAAGGCTGTGCTAAAGTTTCCATTCCAATGTAATCTCTGCTTTAAGGGCTTCAACTTTGAGTCCAAATTGCAAAACCACATGACCAAGCACAGTCCGTCGAGGGGCACGTTCAAGTGCGAGCTGTGCCGCATGTACCTGCCGACCGCATACAGCGCTAGCGTTCACGCTTTGATCCACACGCGCCGCTACGAGTGTCTACGCTGCGGCAGGCGCATGACCGACCGCGCCTCCATCCTCGACCACTACAGCTCACAGCACGAGGGTTTGCTCAAACTCTACACGTGCCAGCTCTGCGGGAAAGTATCCAACAACAGCAAGACCCACCGGGGCCACATGCGGAACCACCACTCTGGGGACAGGCCGAGGTGCGAGCAGTGCGGCAAGAGTTTCGTCAACAAAGACTCCCTGGCTGAGCACCAGCAGATCCACCAGGGCATAAAGAACTACGAGTGCGCCGAGTGCGGCGCCCGGTTTCGAACCCGCACCCAGATTAAGCACCACCAAAGGAGGCACTCCGACCTCAAGGAGTACTACTGCGTCGAGTGCGACACCAGGTTCAAATCCGCCCACAGCCTGAGACAGCACCTGCAGAGGAGCCTCAAGCACATGGACACGCAGAACCTCAAGTACCGCTGCGGGCGCTGCGAGAAGCGCTTCGAGTCGGAGCGCGCGCTGCGCCACCACACGAGCGTGCAGCACGAGGGCGTGCGCGCGCACCGCTGCGCGCAGTGCCCCAAGGCGCTGGCCACGCGCAACTCGCTCGCCAAGCACGTGCGCGCCGTGCACGCCGGCAAACGCCCGCCGCCCGGACACGTGTGCGACACGTGCGGCAGGGCCTTCCGGGGCAAGAGCGTGCTGACGAACCACGTGCGCACGCACACGGGCGAGAAGCCGTTCGCGTGCGCCGAGTGCGGGCGCCGCTTCTCGCAGCGCACCGCCATGCGCACGCACCTGCGCCTCGTGCACCTCAAGCTGCGCCGCAGCGCCAAGAAAGGTTTAGCTCCGACCGTTACTCCAACTCCTGGTCAACAGATCAAGCCGGAACTGCCCCAGGAGCCCCAGGAGCCGAAGCTGGCGGAGCCCTTCGCGAAGGAGGAGGCGCCCCTGGCCTTCGAGGAGTGGGAGAGGCCCCAGGTGCAGCCGTGCGACGTGTACTTCAGGGTCACGGCGGGACCCTGA
- Protein Sequence
- MRVHSAEATGEGQEEKKPERKTSIRKPVELDPTKIRIVVLNPEEQIKQREEESKAVLKFPFQCNLCFKGFNFESKLQNHMTKHSPSRGTFKCELCRMYLPTAYSASVHALIHTRRYECLRCGRRMTDRASILDHYSSQHEGLLKLYTCQLCGKVSNNSKTHRGHMRNHHSGDRPRCEQCGKSFVNKDSLAEHQQIHQGIKNYECAECGARFRTRTQIKHHQRRHSDLKEYYCVECDTRFKSAHSLRQHLQRSLKHMDTQNLKYRCGRCEKRFESERALRHHTSVQHEGVRAHRCAQCPKALATRNSLAKHVRAVHAGKRPPPGHVCDTCGRAFRGKSVLTNHVRTHTGEKPFACAECGRRFSQRTAMRTHLRLVHLKLRRSAKKGLAPTVTPTPGQQIKPELPQEPQEPKLAEPFAKEEAPLAFEEWERPQVQPCDVYFRVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -