Ipod020115.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152840.1:3125970-3128699[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.003 0.25 12.1 6.8 1 23 141 164 141 164 0.96 2 19 1.7e-05 0.0014 19.2 3.0 1 23 173 196 173 196 0.96 3 19 0.013 1.1 10.2 0.8 2 23 209 231 209 231 0.97 4 19 0.00038 0.032 15.0 1.3 1 23 240 263 240 263 0.97 5 19 1.9e-05 0.0016 19.0 1.6 1 23 275 298 275 298 0.97 6 19 4.6e-05 0.0039 17.8 0.8 2 23 328 350 327 350 0.96 7 19 0.0003 0.025 15.3 1.3 2 23 360 382 359 382 0.96 8 19 0.047 3.9 8.4 0.7 3 19 388 404 387 407 0.93 9 19 9.1e-05 0.0076 16.9 0.1 2 23 412 434 411 434 0.97 10 19 0.0092 0.77 10.6 0.6 3 23 444 465 443 465 0.96 11 19 0.064 5.3 7.9 4.2 1 23 470 493 470 493 0.93 12 19 5.1e-05 0.0043 17.7 1.0 2 23 505 527 504 527 0.96 13 19 0.00073 0.061 14.0 0.8 1 23 550 573 550 573 0.97 14 19 0.15 13 6.8 0.1 2 23 580 600 579 600 0.93 15 19 0.0037 0.31 11.8 2.6 2 23 606 627 605 627 0.97 16 19 7.3 6.1e+02 1.5 1.3 2 23 634 657 633 657 0.90 17 19 0.47 39 5.2 0.4 2 23 665 686 664 686 0.94 18 19 0.0011 0.095 13.5 0.3 1 23 693 715 693 715 0.98 19 19 0.14 11 6.9 2.0 1 23 721 744 721 744 0.96
Sequence Information
- Coding Sequence
- ATGTCTGATGGGCCAAATGGTGCCGAAGATCTATCAATAGATAGAAAAGATCCCACATCTTTCTTGCCAGAAGAGCCAATGTCATATGAAATAAAAGTAAAAAAAAAGAAGAAAAAGAAACACAAACAGGTGGACCCATTTAAAGATTTAGAAGAGAAGATTGCACTGCCAACGGATATAGCACTTGATCCAGAGGTTAATATAAAAGTTGAGAGTATTGAAGTAGAGTTGGATCTTAATGATTACACAATTGACAACACCTTGACAGTGGATGGGCCACAGAGCGAGGAAAGCCAGGAGCCTGTGGTGAAACTGGAGGAACAGAGTCGTGAAGCGGTTATCTTAACTTTCGAGAGTGTTGTCAGTGATAAAAAGGTTTTCGAATGCACTCGGAGTGCCCCTGGCGCTATGGAGCCGGTGCATATGTGTAAAGTGTGCCATCTAGTATTCCAATCGTCGAAAACCCTAAAGACTCACCAGAAGAGGAAGCACAAAGTATTTAGACGTTCGTTTAAGCACATCTGCGACCATTGCGGCATGTCGTACGAGAGAAAGAATAGTCTGATGGCCCACATAAGGAGGAAACACGCTCCGAACTCCATGCCGGATGATAGAGAGGAAAGGACATGCGATATCTGCGCGCTGGTGTTCAAGGGTATGACCAGGTTGAGGATGCATATGAGACGGAAGCACGGCTCCTTCGAGGAGTCATTCCAGCACGTCTGCAAAGAGTGCGGCCTGACGTACGACAAGTACAGGAGTCTGATAGTCCACATACAGCGGAAGCACACCACAGACCGGAAGCCCGTAGCCAACCAGTGGTTCAAATGCCCCTTCTGCCCGAAAGCGTTCACCAAAAGGGAGACTTATGCCAGGCACGTGCAGAGGAAGCACCGCGTCTCAGACGAGGACAGCGTCAAGCGCGAGGACGTGGACCAGGGCCTTCTGGAAAGCTGCAAGAACGAAGAGACCGGCGAAATATCCTGTAAGGAGTGCCCCCTAGTCTTCTCCTCGCTGAATTTCCTCAAGCTCCACATGCGGAGGAAGCACAACGCTCTGAAGGAGGACTTCCGTCTTAAGTGCAGGATATGCAACCTCTCCTACGACAAGATCGAAAGCCTGAAGCGGCACATCCGACGGAAGCACGACAGGGGCTCGTTCTGCGAGGTGTGCAACAAGCAGTTCGACACCAGGGAGCTGTACTTGAACCATTCGCACGTGAAAGTGATCAAGGAGTGCACGGTGTGCGGTCTTATATTCGCCTCGCAGGGCGGCCTCGGCAAGCACCTTCGCACCACCCACAAGATCGACGCGCCCAAGACCGTGTTCTGCAACCTGTGCAACGAGGGCTTCTACGACAAGAGGCAGCTGAAGCCGCACCTAATGAAGGTCCACCTCAAAGTGTCCTACACCTGCCGCCACTGCATGAAGGTGTTCAAGGCGAGGGAGAGCTACCGGCGGCACGTGCTGTTCAAACACCCGTCCGGCGCCGCCAGCCAGGGCCAGATGCAGAAGTGCGAGCACTGCCCGCAGACGTTCCCCGACGAGGTGGAGCTGTGCCGCCACATCAGCGTCGCCCACGCGAAGCCGGCCGACGGCCAGCCCATGGAGCTGGTCGTGGTCAAACAGGAGGAGCCCGACTACAAGTTCCAGTGCTCCAAGTGCCCGGACTCGTGCGCCACCTGGGACGAGCTGCGGGCGCACTACGAGCGCAACCACCAAATAGTCGAGTACACCCAGTGCCAGGTCTGCGGCGAGGTGCTGCCCGGCAACGAGCTGCAGAAGCACATGAAGGGGCACGCGGATACCGAGCTCCAGTGCAAATACTGCGATTTCAAAACGCGCACGCGCGCGAGCATGACGCAGCACACGCTCAGGCACAAGAACGCCACGACGCTCCGCTGCGACTTCAACGGCTGCAAGTACAAGAGCTTCTACGAGGGGGCGATGCTCAAGCACAAGAAGCGGCACAGCGAGCAGGGGCTGAAGCTCCAGTGTCCCCAATGCCCCTTCCGCACGATGAACAAGTACATACTGAAGTACCACCAGGAAGCGCACGCGACCGGCAAGAAGCGGTACACGTGCGACCAGTGCGACTACGCGACGACGCTGCCCGCCAACCTGGTGCAGCACAGGTACAAGCACTCGACGGAGAAGCGGTTCAAGTGCGAGGTGTGCCCCTTCGCCACGAAGTACAACACCTCGCTGAGGTTCCACGTGAAGAAGAAGCACTGCGACCTGCCGACCATCAGCTCCGGTTGA
- Protein Sequence
- MSDGPNGAEDLSIDRKDPTSFLPEEPMSYEIKVKKKKKKKHKQVDPFKDLEEKIALPTDIALDPEVNIKVESIEVELDLNDYTIDNTLTVDGPQSEESQEPVVKLEEQSREAVILTFESVVSDKKVFECTRSAPGAMEPVHMCKVCHLVFQSSKTLKTHQKRKHKVFRRSFKHICDHCGMSYERKNSLMAHIRRKHAPNSMPDDREERTCDICALVFKGMTRLRMHMRRKHGSFEESFQHVCKECGLTYDKYRSLIVHIQRKHTTDRKPVANQWFKCPFCPKAFTKRETYARHVQRKHRVSDEDSVKREDVDQGLLESCKNEETGEISCKECPLVFSSLNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDRGSFCEVCNKQFDTRELYLNHSHVKVIKECTVCGLIFASQGGLGKHLRTTHKIDAPKTVFCNLCNEGFYDKRQLKPHLMKVHLKVSYTCRHCMKVFKARESYRRHVLFKHPSGAASQGQMQKCEHCPQTFPDEVELCRHISVAHAKPADGQPMELVVVKQEEPDYKFQCSKCPDSCATWDELRAHYERNHQIVEYTQCQVCGEVLPGNELQKHMKGHADTELQCKYCDFKTRTRASMTQHTLRHKNATTLRCDFNGCKYKSFYEGAMLKHKKRHSEQGLKLQCPQCPFRTMNKYILKYHQEAHATGKKRYTCDQCDYATTLPANLVQHRYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTISSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856030;
- 90% Identity
- -
- 80% Identity
- -