Ipod006440.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152819.1:12039915-12047556[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.01 0.86 10.4 0.7 3 23 208 229 207 229 0.91 2 23 0.2 17 6.4 0.3 1 22 618 639 618 639 0.95 3 23 4 3.4e+02 2.3 0.3 1 22 681 702 681 704 0.82 4 23 0.17 14 6.6 0.3 3 21 715 733 713 734 0.93 5 23 1.2 97 4.0 0.0 3 23 743 764 741 764 0.89 6 23 0.0036 0.3 11.9 0.1 3 23 785 806 783 806 0.96 7 23 0.0011 0.095 13.5 2.5 1 23 812 835 812 835 0.95 8 23 0.075 6.3 7.7 0.0 1 23 861 884 861 884 0.90 9 23 0.0033 0.27 12.0 3.5 1 23 889 911 889 911 0.97 10 23 0.0054 0.46 11.3 0.2 1 23 917 940 917 940 0.95 11 23 0.0014 0.12 13.2 1.3 1 23 953 975 953 975 0.97 12 23 0.00011 0.0089 16.7 1.8 1 23 1024 1047 1024 1047 0.97 13 23 0.0029 0.24 12.2 1.7 1 23 1109 1132 1109 1132 0.96 14 23 0.00072 0.061 14.1 2.3 2 23 1156 1178 1155 1178 0.95 15 23 0.024 2 9.3 0.1 2 23 1184 1206 1183 1206 0.94 16 23 0.0059 0.5 11.2 0.2 1 21 1249 1269 1249 1270 0.95 17 23 0.00025 0.021 15.5 1.0 1 23 1280 1302 1280 1302 0.93 18 23 6.7e-05 0.0056 17.3 0.3 2 23 1392 1414 1392 1414 0.93 19 23 3.7e-07 3.1e-05 24.4 1.1 3 23 1421 1441 1420 1441 0.98 20 23 0.0018 0.15 12.8 0.5 1 23 1460 1482 1460 1483 0.93 21 23 0.074 6.2 7.7 0.0 1 23 1504 1526 1504 1526 0.97 22 23 0.0074 0.62 10.9 0.9 1 23 1532 1555 1532 1555 0.95 23 23 0.00015 0.013 16.2 0.4 1 23 1563 1586 1563 1586 0.96
Sequence Information
- Coding Sequence
- ATGAGTGCGAATTATGACCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCTTCGCATCAAAAATTAAGGATTGTGTGTCTGTAGAGATAAACGAAGATGACGACCTGCCAACTAATGTTTGCAGAAAATGCATGGACAATGTTAATAATTGGCACATATTTAAGGCTGTATGTGAAAGGGCACAAAACAAACTTCATACTCTGATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAATGAACCTTTGTCTGATGAAGCTTATGATGATGGAGTTGTTATTGATGCTACATATCCTGACCTTGAGAATGCATCAACATCCAGTAAGGTGTTACCTGAAGGTCCACCAATATTGGCTTCATTGGGTCTTACACCACGCAGTGATAAGGGCATGGAGAGTGAAAAGGACGAAGATGAAGAGTACGAAGAAGTGATGAACAACTCCAATCAGCGTTTCGTGAATGTGCCAAATATGCCGGAAGTGTCCATTACCGTAATGCGCCCATCCGGTGAGACATTGCATGCACGCCAAGGCATCCAGCAACTCGCTTCCAAAGATTGCCTTGTGTGTGGCCGATCCTATAGATATTCTCATAATGCCAGACGCCACGAAATCAATGCACACAGTTTCGATAGATATACAAATAAAGTTACCACCAAAAAGTCCCATATACAAATGCAACCAAAACTAAGACCGAATCCGTTCAATCCTAAAGCCCGACTCATGCCGAATCCAATTAGCCATAAAATGCAATTAATTCCGAAAGGGATAAATGCAAAGCTCATTCATCAGAAATCAGTGCCCCCACCAAAACCCATACCAATTAAAACAATAAAGGCCTCGCAAAATAATTTGCCATATCCGCTCAGAATAAAAGCGCTTAAGGACTTGCAAATAAAGAAAAAAGAACCTCAAATACTTAAAACTCTACTGACAACGAAACCCGAGGTTTTGGTCTCGGAACCGGAAATTATTAATTCAGCCCCAGAAAGTCCGGAAACATTGATTTCAGAACCGGAAATAGCTTCGTTTCAAGTAGAGGCTATTCTTTCAGAGCCGGATTATAATCCGCAACAAGATGATGAAGATGGGGATGCTGACATGCAGAATAATCAAAGCCAGAATTATGACACTGTTGATATGGATTCTGAAAATGAAATCGAAATCGCTAGACAGAAAGAAGATGCTGCCGAAGGGGAAGGTGATGATCAGCAAGGTGATAATGATATAGATGATGGTAATGAAATTGAAAATATGGACAATGGTGATGAAAATCATGTAGAAAGAAATCAAAGTGACAATGATAACGATCAAATAGATGAAGTTGCCGATAGTCAAGACGAGTTACAAATTATTAACGATGTTGAAGGTAGAGACGAAGACGATGCGAAAGAAGGTGAAGAGATCAACGATGAAAGAGACGACGAACAGGCTGAGTACAATCATGAAGAAAATGAGAATGATGACGATGACGACGAACTACCGCCTATGAGTATAGCTCCAGTTGTTGAAATCAATGAAGACATGCAAACAAATTCATATAACAGCGAAATAAACGAGGAAGAAGAGCTTGACGAAACTGTAGATCCAAACGATACAGTAGACGATGTTAAAGAGCTTGATCCCGATAAGTTGTATGTGACGAAGACGCAGAGAGATTTTATTCTTAAGTATCGTGACATAATCGAACAGATCAATACTAAAAGGTGTCTCTGTTGCGACAGAGAACATCCGCGCCGAAAAGCCGTCATACAACATTTACAGAAAAATGGCCACAAGGTACCTAAACATACGTGCTACAATTGCGTTGTTACGTTTGGACACATAGGCGCACTACTGAGTCACATGCGTTCCAACACGTGTACAGACTTGTGGAAAATTATTTACAACGAAAACGGAATCACCGATGACCTAGTCTTAGAAGACGAGCCTAAAGATACCAAAGTCCAGTACAAAGATATATTTAACGCCAGGTCATATGCGTGCAAATTGTGCCCGGCCAAATTCCAACTGAAACAATTCATCATGAAACACGTTTTGGACGTGCACGAGGATGGCCAATCGCGTGTGCAGCTCGCGTGCGTCCATTGCGGCTCTAGGTTCAAAGATAAGGCGATATGGAAGAAACACATTCGGAATGGTGAGTGCACAGTTTATATCGCATGCGACTTGTGCTCGGAAAGATTCGGCAACATGCAGGACTTCAACGACCACGCACTGGCCGTGCACGCCGGTAGCTTCGACCAATCTGATAATCAGAACAAGTGCGTCGACGGACGCCCGACCGATTGTCCGATATGCGGAAAAAAGAACAGCAGCTACCCCAATTTGGTTAAGCATCTAAAGATTATACACAGTGAAGAAAAGCCGCACTACTGCCAGCATTGCGACTCGAAATTCGAACAGGCCGCCGACCTCAACAAGCACATTTATATGGAGCACTCTGATAGGACTCTCGGAATGCAAAGCATCGAGCCCGACATGTCGCTCGTCAAAGAGGAAGCGGAGGAATATCACTATTCGTGCACGGAATGCAACGCCATATTCGAAACCGTCGACGCTTGGACGGATCATCAGGTGGCTGAGCACAATCAGGTCGCCCACCATTGTGACCAATGCGACAAGAAGTTCCTTAGGCCGTCGGAGCTCGCCGAGCACAAGAACACTCATCTAAGGGTCAAATTCTATCCGTGCAGCATTTGCACAAACTCTTACAGCACACCGCAGAAGCTTTCGGAACACGTACAGCAAGCGCACCCCGGCGCTGGGGCGTACGCACCCATGGACTCTGAATTTTTCTGCGATATTTGCATCAGATCGTTCAAGAGCCGTCAGGCCTATTCGAACCACATGCGCATCCACGCCAAGGTTCCAACCACCAATAGGAAACCTGGGGACCCGAAAGGGTTCGCCCCGCAAATCGTCGGGAAGCCGATTAGATCGTTCTCGATGGTGCAACCCAGTTTTCTTACGTTCAAGCCCAACTGTAACGTGCCCAATGCACCGTACTCGTGTGATATATGCGGAAAGGGATTCATGCACAAAAAAAATATTTGGAAGCACAAGAAAGTACTGCACGCAGATCTGGTAGGTGACAGGAACGATAGCGAAGAGAACACCATGCAGGCATCCACCGAGGAGGATGAGTATAATTATTTAGATGAAAACGGCGCTATACTGTCGACGCCGCAATTTAATAGTTTCAATTTCACGAACCTTACAAATAGCTTACAACAACAGACCTCTCAGGAGGCAATGCCATATTCTTGCGAATTGTGCTTCAAACGTTTCCCACTTAGAACCAGTCTATGGAAGCATAAAAGGGCCAAACACGGAATTATCAACGCTAGTGCCAGCGGAAGCGCAGACTCTCCAATAATGGCTAGTGAAAGTGGCCGTTCAAGTTGTACCATTTGCAAAATTACTTTTACTGATAAAAAGTCTTACTACCGCCATAGGAAAAACGTTCACAAGTCCTCCTCGCAGATGTGTAAGATTTGCGGGAAGCCTTTGAGTTCGACGTTGGAACTGTATGAGCATCTAAAAGCCGCACACGCGAGAGAGTTATTGGGATACAATGAGAATCAAGGTGCCAGTAAACCGGAGATCGTCCAAGATCTGGAAGTGGAATACGAAGGTGATCAGGATTCGGTAGATCCCTCTGCCGAATATCAGGCTAGATATCCATGTGACACTTGTGGCAAACAATTCGTCGGCCTACTCGCATTACAAAATCATCAATGCATCAACCAAATACAGTCATCGCCGCAAACCTTCGACTGCGAGATCTGCCACAAGAGTTACACATCGATATCCGCACTCAAGAGCCACCGCGGCTGGCACCTGCGCTCGCCCGACGGCAAAGCGGCCGCCAATAACACTGGCCTGTGGATGCCTCAGCACAAAGTCACCAGCAAAGTGAGCAAGCACGAGGTCGTTGACCCGTCGCAGCTGGCGCGGGTGACCCACTCGACGCCGGCGAGCGTCGCCAAGAGAAGGCTACCGCCGGAGGTGGAGGTGACCGTCGTGAATCCCAACAAGAAGATGCGCTCCGACGACTCGGTGGAGCTGGAGCAGCAGACCAACTCGATGACGGGCACGGAGGACAGGTACTGCACGATATGCGACAAGGAGTTCACCAAGCGGGCGGCGTACCAGCGGCACATGGACGAGGTGCACCAGCCGAACTCCGTGTTCTGTCCCGTCTGCGAGAAGAGTTTCACGCGCAAGTCCACGCTGATCGTGCACATGAAGAAGCACTACGAGAGCGGCGAGGGCAGCTCCGCGGCGGCGGACCAGATCGACGACGAGGGGCACGCGTGCGACGTGTGCGGCGCCCAGTACGAGACCGAGAGCGCACTAAGGGCGCACCGGGCGCGGCACCACGGCGACGATTCCGCGGAATCCGAGGAGGACGACGGCACCAGCGTGCCGCCGCCGGGCGAGTTCACGTGCGGCCAGTGCGGCGACGGGGTTGCCACGCCCCGCGACCTGATCGCCCACCGCGCCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCTCGCGCGCCCTCGACCTGTCCTCGCACACGCGCGCCCGCCACGCGGACAACGAGAAGGTGTTCTTCCCGTGCGCGATGTGCGACCGCTTCTACATGAACAAGAAGAGTTTGCAGCGGCACATCGAGATGGCCCACTGA
- Protein Sequence
- MSANYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVFASKIKDCVSVEINEDDDLPTNVCRKCMDNVNNWHIFKAVCERAQNKLHTLIKNDGSQLEEVQIKNEPLSDEAYDDGVVIDATYPDLENASTSSKVLPEGPPILASLGLTPRSDKGMESEKDEDEEYEEVMNNSNQRFVNVPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHEINAHSFDRYTNKVTTKKSHIQMQPKLRPNPFNPKARLMPNPISHKMQLIPKGINAKLIHQKSVPPPKPIPIKTIKASQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSAPESPETLISEPEIASFQVEAILSEPDYNPQQDDEDGDADMQNNQSQNYDTVDMDSENEIEIARQKEDAAEGEGDDQQGDNDIDDGNEIENMDNGDENHVERNQSDNDNDQIDEVADSQDELQIINDVEGRDEDDAKEGEEINDERDDEQAEYNHEENENDDDDDELPPMSIAPVVEINEDMQTNSYNSEINEEEELDETVDPNDTVDDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLACVHCGSRFKDKAIWKKHIRNGECTVYIACDLCSERFGNMQDFNDHALAVHAGSFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGMQSIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICTNSYSTPQKLSEHVQQAHPGAGAYAPMDSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIVGKPIRSFSMVQPSFLTFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVGDRNDSEENTMQASTEEDEYNYLDENGAILSTPQFNSFNFTNLTNSLQQQTSQEAMPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSADSPIMASESGRSSCTICKITFTDKKSYYRHRKNVHKSSSQMCKICGKPLSSTLELYEHLKAAHARELLGYNENQGASKPEIVQDLEVEYEGDQDSVDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQIQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPASVAKRRLPPEVEVTVVNPNKKMRSDDSVELEQQTNSMTGTEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYESGEGSSAAADQIDDEGHACDVCGAQYETESALRAHRARHHGDDSAESEEDDGTSVPPPGEFTCGQCGDGVATPRDLIAHRAMHATPTKFFCNICKVYFSRALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155687;
- 90% Identity
- -
- 80% Identity
- -