Ipod021102.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152842.1:1881161-1883503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 6.2e-07 5.2e-05 23.7 1.9 1 23 8 31 8 31 0.95 2 21 0.00048 0.04 14.6 0.3 2 23 37 59 36 59 0.95 3 21 7.9e-06 0.00066 20.2 0.3 2 23 68 90 68 90 0.97 4 21 2.3e-06 0.00019 21.9 2.2 2 23 99 121 98 121 0.95 5 21 1.5e-05 0.0013 19.3 1.2 2 23 129 151 129 151 0.96 6 21 2e-06 0.00017 22.1 1.0 2 23 160 182 159 182 0.95 7 21 4.7e-07 3.9e-05 24.1 1.4 1 23 188 211 188 211 0.98 8 21 0.26 22 6.0 1.2 1 23 219 241 219 241 0.95 9 21 5.6e-05 0.0047 17.6 0.5 1 23 262 285 262 285 0.98 10 21 0.00036 0.03 15.0 0.3 1 23 313 336 313 336 0.97 11 21 5.2 4.4e+02 1.9 5.5 2 23 344 366 343 366 0.96 12 21 0.63 53 4.8 3.8 3 23 374 395 373 395 0.95 13 21 0.0023 0.19 12.5 5.9 1 23 419 442 419 442 0.96 14 21 1.4e-05 0.0012 19.5 0.5 2 23 449 471 448 471 0.96 15 21 4.8e-05 0.004 17.8 2.6 2 23 478 500 477 500 0.94 16 21 0.0084 0.7 10.7 1.5 1 23 506 529 506 529 0.97 17 21 0.14 12 6.9 7.1 2 23 537 559 537 559 0.95 18 21 0.0035 0.29 11.9 0.2 1 23 566 589 566 589 0.97 19 21 7.6 6.4e+02 1.4 1.6 1 23 596 619 596 619 0.94 20 21 2.7e-05 0.0023 18.6 2.6 2 23 633 655 633 655 0.97 21 21 4.2 3.5e+02 2.2 0.1 3 17 677 691 676 692 0.92
Sequence Information
- Coding Sequence
- ATGTTGCCCAGTCAAGTTGACTTTGTGTGCGACTACTGCAGTCGCTCATTCACGCGTAAATACAATCTGCAGTCGCACATCGAGAACTACCACATGAACTTGTCGTGTTACTGCGATATATGCGACCAGAGATTTGGTTCCCCGGCCGGCCTGCAGCTACATCTCTCGAGGGGCCACAACAGACACGGGCAGCCGTTCCCCGAATGCGACCTCTGCGGACGGGTGTTCACCAGGAAACAGAACATAATGTCGCACATGATCACCGTCCACCTCCAGGGCAGCCGGCCCGCGATTCGCTGCCAGATGTGCGACAAGACATTCACCACGGAGAGGAACCTGAAGCGGCACAGGAACCAGCTGCACAACCCCCACATGAAGTACCCCACCTGTGACGACTGCAACAAGGTATTTAAAGGGAAACACTCGCTGATAGCCCACATAAGTTCTACCCACACGGCGACCGAAAGGGACTCTATCAAATGCAACCTATGCGACAAGGTGTACACGAACAATCGCAACCTGAAGCGGCACGTGGAAATGTTCCACGGGGAGCGCGGCGAGTACAAGTGCGCGATTTGCCCGAAGGTGTACACCTCCAATCAGAGCCTGCGCCGCCACACCCGTACTAGGCACAACCCGGAGAAGACTGCCCAGTTCAAATGCAAGCACTGCCTCAGGGTTATATACGGGCGGGACAACTTCGAGGGTCATGTCGAGCAGCACAGACAGGACGGGTGTGCGAGTGACTACGAAGTGTTCAACGACGACTTGAAACTTAAGGAGTACTCCTGCGACAACTGTGGTATGACCTTCGAGGAGGAGCCCCTGTTGCGGCACCATATAAAGACCGAGCACTCCTTCGGGGAGTTTTACAGCTACTGCAAGCGCTCCCTTCTCAAACTCATGAAGGGAACACCGAGGAGTCGGCACCGCTTCTACAACTGCGAATTCTGCAGCAACGCCTTCGCCAGCGTCTACGAGTTGAAGGACCACATGCGAGTGAGCCACGACAAGGAGTACTCCCTGTCCACCTGCAACGTGTGCTTCAACAAGTTCTACAGTAGAGAAACTGTGCATGAGCACAGGAAAATATGCCACCCGCCGGCGGACGTGAACGCGTGCTGTCACTGCGACAAACTCTTCACTGACATCACCAGCCTAGAGTTCCACACGAGGATCTTCCACCCGCAAGCGCAGGTCGACTCGACAATCTCGTCCAGCTGCTTGGACGACACCTCGATGGACTTGGGATGTTACAAGTGCTCCCATTGCGACCGCGTCTACTACAGCGATAGGTCACTGAAGCACCACGTCAAACTCAAGCATACGACCGACGAGCCCGTAGAGTGCGAGCTGTGCGGGAAAATGTGCAGCAACAAGTACTACCTCGCGTCGCACATAAAAATAGTCCACAGCACCGACAACTGGTCGAAGTGCGACTATTGCGAGAAGAAGTTCAAATCGAAGAGGAACATACGACGGCACATCGAGTACACACACCTGGGCATGCAGAGGTACAAGTGCATCGAGTGCGAGACCTTGTTTAAAGAGAAGAGGAGCCTCAGGAAGCACGTAAGGGTGAAACACCCAGATTCCACTTGCTTCCCGCAGTGCCACATTTGCCATAAGCGCTTCGAGTCCGCCAAGTCGTGCAAAATCCACCTGAAACTCCTCCACTCTTTCAACATGAATACGCACCCGTGTGATCTTTGCTCCGTCTCTTTCGGCACCATTGAGGCGCTGAACATACACCTGCAGACAAAGCACCTCGCCGAGGACATGATATACAAATGCGAGCCATGCAACCTACTCTTCAATGGGCACGAGAAGTTCGAGCAGCACAACGAGACATCCCATGCCACCTTGCTTCCTTATATCGAACGCAGGGCGCAGCCCCGTTGCGCAATTTGCACGAAAGATTTCAGCTCAAGCAAAACTTTGAAACGGCACATAAAGAAGTTCCACGAGGAGTTCGACGCGGACGAGCTGGCGAGGTACGGATGGCGGCTGCGTAGCACCAACGTGGATTGCGAGGACTGTGTGAAGCATCTAACTGACGATTCCCACTTGAATCTGTACCAGCAACTGAGGAACCTTCGCAACTCCACCATATTCGAGTGCAAGAGTTGCTTCACCTCGTATAACGCTTTAGAATACTCGATTTTCCGGTACAAGCTGGTCAATGTGGAAGCGAACAAGAGCAAAATGATCCTAAGCGAGCTCTGCACAGCGGAAATGAGTGACGGGGAATCCCCGATGGAGCCGGAAAGCACCACGTCGGACGTCAAATCCGAACCAATCGATATCACATATGAGGTAAAGGCTGAACCAGTCTCCCCATGA
- Protein Sequence
- MLPSQVDFVCDYCSRSFTRKYNLQSHIENYHMNLSCYCDICDQRFGSPAGLQLHLSRGHNRHGQPFPECDLCGRVFTRKQNIMSHMITVHLQGSRPAIRCQMCDKTFTTERNLKRHRNQLHNPHMKYPTCDDCNKVFKGKHSLIAHISSTHTATERDSIKCNLCDKVYTNNRNLKRHVEMFHGERGEYKCAICPKVYTSNQSLRRHTRTRHNPEKTAQFKCKHCLRVIYGRDNFEGHVEQHRQDGCASDYEVFNDDLKLKEYSCDNCGMTFEEEPLLRHHIKTEHSFGEFYSYCKRSLLKLMKGTPRSRHRFYNCEFCSNAFASVYELKDHMRVSHDKEYSLSTCNVCFNKFYSRETVHEHRKICHPPADVNACCHCDKLFTDITSLEFHTRIFHPQAQVDSTISSSCLDDTSMDLGCYKCSHCDRVYYSDRSLKHHVKLKHTTDEPVECELCGKMCSNKYYLASHIKIVHSTDNWSKCDYCEKKFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRVKHPDSTCFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFGTIEALNIHLQTKHLAEDMIYKCEPCNLLFNGHEKFEQHNETSHATLLPYIERRAQPRCAICTKDFSSSKTLKRHIKKFHEEFDADELARYGWRLRSTNVDCEDCVKHLTDDSHLNLYQQLRNLRNSTIFECKSCFTSYNALEYSIFRYKLVNVEANKSKMILSELCTAEMSDGESPMEPESTTSDVKSEPIDITYEVKAEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -