Ipod000034.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- CAKOGK010000046.1:2613-11867[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.34 28 5.7 0.7 1 23 41 63 41 63 0.93 2 36 0.14 12 6.9 0.4 2 23 135 157 134 157 0.95 3 36 0.00096 0.081 13.7 1.7 2 23 163 185 162 185 0.95 4 36 0.0047 0.39 11.5 0.6 1 23 190 213 190 213 0.94 5 36 0.14 11 6.9 0.2 2 23 216 238 215 238 0.96 6 36 0.036 3 8.7 1.6 2 21 245 264 244 265 0.93 7 36 0.045 3.8 8.4 0.3 1 21 325 345 325 348 0.89 8 36 2.8 2.4e+02 2.8 0.0 3 23 377 398 375 398 0.93 9 36 0.00081 0.067 13.9 0.1 2 23 421 443 420 443 0.96 10 36 0.003 0.25 12.1 0.7 2 20 449 467 448 471 0.90 11 36 0.76 64 4.5 0.1 1 23 476 499 476 499 0.94 12 36 0.0016 0.13 13.0 0.4 2 23 505 527 505 527 0.92 13 36 0.029 2.5 9.0 0.4 1 15 531 545 531 556 0.92 14 36 0.035 2.9 8.8 0.1 2 23 563 584 562 584 0.96 15 36 0.00057 0.048 14.4 2.6 3 23 633 653 631 653 0.96 16 36 0.039 3.3 8.6 0.0 2 23 681 703 680 703 0.91 17 36 0.029 2.4 9.0 2.2 1 23 723 746 723 746 0.95 18 36 0.0026 0.22 12.3 0.3 1 23 751 774 751 774 0.96 19 36 0.00061 0.052 14.3 0.2 1 23 779 802 779 802 0.94 20 36 0.047 4 8.4 0.3 2 23 805 827 804 827 0.96 21 36 9.4e-05 0.0079 16.9 2.3 2 21 834 853 833 854 0.94 22 36 0.024 2 9.3 3.8 3 23 932 952 930 952 0.96 23 36 0.035 3 8.7 0.0 2 23 980 1002 979 1002 0.91 24 36 0.041 3.4 8.5 1.0 1 23 1022 1045 1022 1045 0.95 25 36 0.00024 0.02 15.6 1.1 1 23 1050 1073 1050 1073 0.98 26 36 0.00091 0.076 13.8 1.2 1 23 1078 1101 1078 1101 0.94 27 36 0.0088 0.73 10.7 1.4 2 23 1104 1126 1104 1126 0.96 28 36 0.026 2.1 9.2 2.0 2 22 1133 1153 1133 1153 0.95 29 36 0.048 4.1 8.3 3.0 1 23 1207 1230 1207 1230 0.93 30 36 1.8 1.5e+02 3.4 0.1 2 23 1303 1326 1302 1326 0.93 31 36 9.4e-05 0.0079 16.9 0.3 3 23 1333 1354 1332 1354 0.94 32 36 0.0081 0.67 10.8 4.9 2 23 1359 1380 1358 1381 0.94 33 36 0.0006 0.05 14.3 1.8 1 23 1386 1409 1386 1409 0.94 34 36 0.00015 0.012 16.2 5.8 1 23 1413 1436 1413 1436 0.97 35 36 0.00072 0.06 14.1 0.5 3 23 1444 1464 1443 1464 0.97 36 36 0.0001 0.0088 16.7 0.6 1 23 1470 1492 1470 1492 0.97
Sequence Information
- Coding Sequence
- ATGAATGGTCTCGTTGGGCGCAAAATCAAAGGCGGCGAATCGTGCTCAATGCGCCGCCGGAGGAACCTGCTGCTAATATTCAACAACAGCGCGGTCATACCGTTCAAGTGGCGCGGCCGGTACCTATGCTTCTACTGCAGCAAAGACCTGGCCGAGTACACGGAGCTGAGGCGGCACACCACCGCGCACGGGGACTGCTCCATCGGGGACCATTCGATGAAGGTCCTGAAGGGCGGTCAGAACATGGAGGTCAAGGTGGACGTGTCGGACCTGAGTTGCCGTGCGTGCGGGCTGCCCCAAACGACCCTGGACGCTCTACTGGACCACCTGGGCGCCGCACACCAGCTGCAGTACGACAGGACCGTCGACATGGCGATAGAGGAATACAGACTGGCGGACCTCAAGTGCCTGTCGTGCGAAGCGACATTTACTTATTTCGGATACCTAGTGTCGCACGTGAACAGCACCCACCCGAAGAACTGCCTGATATGCGACAGCTGCGACCAGAGGTTCAACAAGAAACGGGACCTGTTCTCGCACATGAAGAACTACCATCGCGAAGGCGGTTACACCTGCGAACTGTGCCCGATGAGCTTCCCCTCCCTAAACGTATTGAGGAAGCACAAGAGCAACCGCCACATCACTCGCTGTGAGGTCTGCCAGCTGAGGTTGCCGTCGGCCGCCCTCAAGCAGAAGCACATGAACATGGAGCACCCGGATAACGGATCGCTGCAGTGCGACAACTGCTCGAAAGAGTTCCACACAAGACAGGGGCTTAGGATGCACTCGCGAAAGTGCAAAGGCCTCTGCGACGAGCAGGCTGTCGTAAAACGCGAACCGCCAGGCGTGATGGACCTGGACGACGGTATCGTCGACACCACACGAAGGCCGAGCGTGAAGCGCATCCGCGAGAACATCGTCACCGTGATCAACATGTCAACAGCGCTCCCGTTCAACTTCTACAAGAACAAGTTTAACTGCTTCTATTGCTCTATGGACTTCGACGATTCGGACTCGATGCGCGCCCACACCGTAGCCGAGCACCCCGTGTGCGACGTAAAGCAAAAGTGCATAAGGAAGTGCCGCGAGTCGGTCGCGTGCGTGAAGATAGACGTGTCCGAGCTCGCGTGCAAGCTCTGCTCCCGTCCGCTGGACGGGTTCGATGAGCTGATCGATCATCTGACTTCGGTGCACGGCGCCGACTACGACAGGTCGATCACGGGCTGCCTGCAGCCGTACCGCCTGTCCGGGGAGCGGGTCCCGTGCCCCCTCTGCCCCGAGCAGTTCCGCTTCTTCGGCACTCTGCTGAAGCACATGAACTCGGCGCACGCTGGCAACCGGCTGATATGCGCGCACTGCGGCCGCGCCTTCGGCCGCGAGCAGAACCTTCGCGTGCACGTGTGGCGGCACCACGCCGCGGGCCGGTTCCGCTGCGCCGCGTGCGCCCTCGACTGTGGCACGCCGTCCGCCCTCTACGCGCACATGGCCAAGGCGCACGGCGCGCGAACCGCCAAGTGCCCCCAGTGCCCGGAGGCGTTCGCGACGCAGCACTCGCGCCAGAGGCACCTTATAGACGCGCACGGCTCGGGCCACAGGTGCGCCCACTGCGGGAAGCTGTTCACGCGCGCCTCGAACTCGTTCATGGTCGATCACGTCAGACGCACACACTTgaaagagcgcaacgtcgaatgtcccctctgcggcgacaggttcttcgacgcgcagcgtctcaaaatgcacatggtgaagcattacggcgaaaggaacttccactgcgacgtttgcgATGACGTACCGCAAGGCCCATACAAGAACCCAGAGATGAGGAGGAGGAACTTGCAAATTCTGTTCAACAACACGTCCATATTGCCGTTCAAATGGCGCGGCAGTTGTCTCTGTTTCTATTGCGGGAAGAGCTTTTCGGAGTACGCCAACTTTGTAAAACACACGCTCTCCCACGGGCGATGCACCACGAAGGACGACTCCCTGAAGTTGATCAAGGGGAACCACGTCGAGGTCAAAGTCGACGTGTCGGACATAACATGCGAGATATGCAGCGAGCCTTTTACAAGTTTGGACGAGATAATTGACCATCTGATCGGCAAACACGGCCTGGATTACGACAGACGGATAAGGACTCCACTCCAGCCGTACAGGCTCGCGGACTTCCGCTGCCTGTTCTGCCAGCAGCAGTTCACATACTTCGGCCACCTGGTCAATCACGTGAACCTGGCCCATCCGCGCCACAGTTTCGTTTGCGACGAGTGCGGCATCAGCTTCAACAAGGAGAGGGACCTAATGTTCCACGTGCGCCGCGACCACCCCCCCGACGCCCACCCCTGTGCCGACTGCTCCACGAGTTTCGATTCGCCCGCACTCCTGCGCGAGCACCAGAAAGACATCCACTTCATGAAATGCGAGCGCTGCGCCTCGGCCTTCGGCACGTACAGCCTCCTTCTGAAGCACGTACGCAGCGAACACCCAGACGACGGCACGATCAAGTGTCCGCACTGCTCGAAGCACTTTCGCTCCCCCCACGGCCTGAAGCTGCACATGATCAAATGCACAATCAACTTTCCCACGCACACAGATCCGGCCGAGGGCAGCCCCGACGGCCTTCTACGGCCTAGGAAGGAGCAGAACGTCGCGCATAAATCAGTAATTCCCCGAACAGCTGATGAAGTACCCCAAGGCCCATACAAGAACTGTACCTCAGAGAGGAGAAGGAGCAACTTGCAAATCCTGTTGAACAACACGTCCATTTTGCCGTTTAAATGGCGCGGCAGTTGCCTCTGTTTCTATTGCGGGAAGAGCTGCCCAGAGTACGCGAACTTTATAAAACACACGCTCTCCCACGGCCCCTGCACTACGAAGGATTACTCGTTGAAATTGATCAAGGGGAACCACGTCGAGATCAAAATCGACGTGTCTGACGTAACATGCAAGATATGCAGCGAGCCTTTTACAACTTTGGCCGAGATAATCGACCATTTGATCGGAAAACACGACCTGGATTACGACACACGGATAGAGACTCCACTCCAGGCATACAGGCTCGCGGACTTCCGCTGCCTCTTCTGCCAGCAGCAGTTCACATACTTCGGCTACCTGGTCAATCACGTGAACCTGGCCCATCCGCGCAACAGGTTCGTTTGCGACGAGTGCGGCGTTAGCTGCAACAAGAAGCGGGACCTCGCGCTGCATTTGCGCCGCAACCACCGCCCGGACGGCTACCCCTGTGCCGAGTGCTCCACTAGTTTCGATTCGCACGCGCTCCTGCGGAGACACCGAAACGATTTCCACTTCAGGAAGTGCAAGCGTTGCGGCTCGACCTTCGCCACGTACAGACTAATGCAGAAGCATGTCCAAAGCGAGCACCCAGACGACGGCACGGCCAAGTGTCCGCACTGCTCAAAACAGCTTCACTCCCCCCAAGGTCTAAAGCAGCACATGAACAAATGCAAGGGCAACGTTCTCGTGCAAACAGATCGGAGCGAGGGAAAGCCCGCAGACGGTCCTCTGCAGCCGAGGAAGAAGCAGAATGTCGCGCAGATAAGACAGAACATACAGTGCGTCCTCAATATGTCGACAGCGCTGCCGTTCAAGTTCTTCGCTAGGTACTGCTGCTTCTACTGCTCGAAGAAATTCGTCGAGTTCGAAGAGCTTAAGGAGCACACGGTATCGGAGCATCCCGTCTGCGATTTGAAGTCGAAGAGCATGAAGAAGTGCAAAGGGGAGAGGATCACCGTGAAGGTGGACGTGACGGGCCTCGGCTGCAAGGTTTGCGGGCAGCCCATGCCGGACTTGGACGTTCTGATCGACCACCTGATCTGCCGGCACGACGCCAACTACGATAAAAGCGTAACGGGCTGCCTGGAGCCGTACAGGGTCATGAAGGACAACGTGCCGTGCCCGCTCTGCCCCGACCGCACGTTCAGGTACTTCGGCATCCTGCTGCGCCACATCAACTCGGAGCACAGCAACAACAACCGCATCTGCGACTTCTGCGGGCGCAGCTTCAAGAGCGTGACCAACCTGAAGGTGCACATCACCTACGCGCACACGGGCGCGTGCGAGTGCGAAGTGTGCGGCGGCAAGTACAAGAACCAGTGGTGCCTCAGCCGCCACATGGCGAGGCACCACGACGCGATGGACTACAAGTGCCCCAAGTGCCCGGAGCTCTTCCGCTCGCAGTACCACaagcagaagcacctgatcgaggcgcacgatataggccacaggtgcgctcactgcggcaagatgttcaccaggaactcgttcatgaaggaccacgtgcgccgcacccacttgaaggagaggaacgtggcgtgttcggtctgcaacgagagattcttcgacaactacctgctgaggatgcacatggtgaagcacgagggcgagaggaagttcagctgcgacgtctgcggcaaggccttcCTGAGGAGGAGCAACCTGAGCTCCCACAAGGAGATGCACAAGAAATACGGCCACTCGCAGCAGCAGGCTTAG
- Protein Sequence
- MNGLVGRKIKGGESCSMRRRRNLLLIFNNSAVIPFKWRGRYLCFYCSKDLAEYTELRRHTTAHGDCSIGDHSMKVLKGGQNMEVKVDVSDLSCRACGLPQTTLDALLDHLGAAHQLQYDRTVDMAIEEYRLADLKCLSCEATFTYFGYLVSHVNSTHPKNCLICDSCDQRFNKKRDLFSHMKNYHREGGYTCELCPMSFPSLNVLRKHKSNRHITRCEVCQLRLPSAALKQKHMNMEHPDNGSLQCDNCSKEFHTRQGLRMHSRKCKGLCDEQAVVKREPPGVMDLDDGIVDTTRRPSVKRIRENIVTVINMSTALPFNFYKNKFNCFYCSMDFDDSDSMRAHTVAEHPVCDVKQKCIRKCRESVACVKIDVSELACKLCSRPLDGFDELIDHLTSVHGADYDRSITGCLQPYRLSGERVPCPLCPEQFRFFGTLLKHMNSAHAGNRLICAHCGRAFGREQNLRVHVWRHHAAGRFRCAACALDCGTPSALYAHMAKAHGARTAKCPQCPEAFATQHSRQRHLIDAHGSGHRCAHCGKLFTRASNSFMVDHVRRTHLKERNVECPLCGDRFFDAQRLKMHMVKHYGERNFHCDVCDDVPQGPYKNPEMRRRNLQILFNNTSILPFKWRGSCLCFYCGKSFSEYANFVKHTLSHGRCTTKDDSLKLIKGNHVEVKVDVSDITCEICSEPFTSLDEIIDHLIGKHGLDYDRRIRTPLQPYRLADFRCLFCQQQFTYFGHLVNHVNLAHPRHSFVCDECGISFNKERDLMFHVRRDHPPDAHPCADCSTSFDSPALLREHQKDIHFMKCERCASAFGTYSLLLKHVRSEHPDDGTIKCPHCSKHFRSPHGLKLHMIKCTINFPTHTDPAEGSPDGLLRPRKEQNVAHKSVIPRTADEVPQGPYKNCTSERRRSNLQILLNNTSILPFKWRGSCLCFYCGKSCPEYANFIKHTLSHGPCTTKDYSLKLIKGNHVEIKIDVSDVTCKICSEPFTTLAEIIDHLIGKHDLDYDTRIETPLQAYRLADFRCLFCQQQFTYFGYLVNHVNLAHPRNRFVCDECGVSCNKKRDLALHLRRNHRPDGYPCAECSTSFDSHALLRRHRNDFHFRKCKRCGSTFATYRLMQKHVQSEHPDDGTAKCPHCSKQLHSPQGLKQHMNKCKGNVLVQTDRSEGKPADGPLQPRKKQNVAQIRQNIQCVLNMSTALPFKFFARYCCFYCSKKFVEFEELKEHTVSEHPVCDLKSKSMKKCKGERITVKVDVTGLGCKVCGQPMPDLDVLIDHLICRHDANYDKSVTGCLEPYRVMKDNVPCPLCPDRTFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYAHTGACECEVCGGKYKNQWCLSRHMARHHDAMDYKCPKCPELFRSQYHKQKHLIEAHDIGHRCAHCGKMFTRNSFMKDHVRRTHLKERNVACSVCNERFFDNYLLRMHMVKHEGERKFSCDVCGKAFLRRSNLSSHKEMHKKYGHSQQQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -