Ipod001066.2
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- bab1
- Assembly
- GCA_933534255.1
- Location
- OW152813.1:17961188-17975674[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-17 2.4e-14 53.0 0.0 1 43 256 299 256 301 0.95 2 2 5.6 8.6e+03 -3.2 2.0 6 15 391 400 387 401 0.82
Sequence Information
- Coding Sequence
- ATGGAAAAAATATCCATCGGATACCGCATCGACGCACGCTTAAACAATCAAACGCAGAACAAAAAGACAGTAATGTGGAAATGGATAATGCAGGAGCGGCCCTCGCAGATAGAGAGCACGCTGCGAGCGGACGCGGCTCCCCTGCCCCACAAATGCCACGGGCTACGGGGCCTCCGAATCGAAATCGAATATCTCCTAATCGTCGCGGAATCCGCTCAGTCGCCCGCCGCCCTCGCCACAGAGCCGCAGCCGGCATCGCGGTGGAGAGGATGTGTGATTAGTTTTATCCTTCGCCCCTCACTCCCCCCCCCCCCCCCCCCCCCCCCGCCGCGTGCCGCCGCCCCCGCTTCCCGCGCCCGTTCTTCGCCGGCTCTATCTTTCACGACCCAAAGAGAAACTGAGGCGTCGGCCGCGCAAAGGGGCGTCGTATCAAACGCCGCGCGCGCCGTCGACGAACGCGTCAATAATTGTAACGGTCAGATGAAAAAGAAACGATTCGCCCGCCGGCGACTGTTTACGTTCGGAGCTGGATCGGCGCTCGGCGCTCGACGGGCGGCGTCCCTTTGTGACCGGCGCGCGAGCAAAGCTTTGTCCGAAGCTAAATTGCTCGAGAATTCGCACGCTTGGCTCGGTGCCTCCACATCATCGATTGCAGCAGACAGCTACCAGTACCAACTGCAGTCGATGTGGCAGAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAACCTGCGCTTCCGCGAGCGCGGCCCGCTGAAGTCCTGGCGGCCGGAGACCATGGCCGAGGCGATCTTCTCCGTGCTGAAGGAGGGCCTGTCGCTGTCCCAGGCGGCAAGGAAGTACGACATCCCGTACCCGACGTTCGTGCTGTACGCCAACCGGGTCCACAACATGCTCGGCCCCAGCGCCGACGGGGGAGCAGATCTGAGGCCCAAAGGGCGCGGGCGTCCGCAGCGCATCCTGCTTGGCGTGTGGCCCGACGAGCACATCCGAGGCGTGATCCGCGCCGTCGTATTCCGCGACACACACGCGCCGCACTCCGCTCACCACATCAAGGACGAGGTCCTCCCTTACCCATCCATCACGGACGGGATGGCTGTCCCGAACGCATACGCCGCCGTGGGTTGTGGCAATGGGCGCGAAGGGGGCGTTTCACCGAACGCCGCCGCCGCAGCGGCCGTGGCAGCTGTGGCGCACGGCCTCCGCCGCCAGATGTGCAACATGGTGGTAGCCGCACAGAGGCCGCCCGATCATCCTCCGCACCTCAGCCTGCCGCCGCTGCCGCTGCAGTCGCCGCGTCTGCCATCCCCGCTGTCAGCTGGTCTGGAGTCCCCGCTCTGCTCTCCGCCACCACCGGGACACGCCCTTGAGCCGCCGAAACCGACCGACCCGTTCCGACCTTTCGCTTCTCCACGCCCGGACAGCCGCTACAGCGAGCGCGACTCGGTTACCGACCTCACTGAGATGGGCCCACCCAAGACACCGGTGGGGATCGCTAAAAATGGCAAGGACATGACCACTCCGCTGCCGGTGAAGATGGAGCTGCCTCCCGCCGAGGCCCGCGCTGAGAACATCTGA
- Protein Sequence
- MEKISIGYRIDARLNNQTQNKKTVMWKWIMQERPSQIESTLRADAAPLPHKCHGLRGLRIEIEYLLIVAESAQSPAALATEPQPASRWRGCVISFILRPSLPPPPPPPPPRAAAPASRARSSPALSFTTQRETEASAAQRGVVSNAARAVDERVNNCNGQMKKKRFARRRLFTFGAGSALGARRAASLCDRRASKALSEAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHSAHHIKDEVLPYPSITDGMAVPNAYAAVGCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLSLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPTDPFRPFASPRPDSRYSERDSVTDLTEMGPPKTPVGIAKNGKDMTTPLPVKMELPPAEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -