Ipod009728.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152823.1:12997288-13004933[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 1.8e-08 34.2 0.0 2 39 120 158 119 162 0.88 2 4 4.4e-12 6.8e-09 35.6 0.1 4 39 176 211 173 214 0.93 3 4 2.9e-15 4.4e-12 45.8 0.1 2 45 229 273 228 273 0.96 4 4 4e-19 6.2e-16 58.1 0.1 1 44 280 324 280 325 0.96
Sequence Information
- Coding Sequence
- ATGGTAAATCAACTGAAGCTTTGTTCGCCCGCCCAGGTCGATGAGGTCGATGAGTTGGAGCTGACGCCACCTGCGCCGGCCGCGCCTTCGGCAACCCCCGTGTGCGCGCGCCGGGTGCCCCCACCCAGGGCTTCGCCAGAGACCCTGGAGACCCTCGAACCAGCGCGCGCCTCGACGGGCACCACATTGCTGGACCGTCGAATGCAGATGCTGGACCCTGGCGATGACTTCGGCCCCCTGCTCTCGGTCAAAGACGAGCCCCTGTCGGAAAGCGAGCAGCAGCAGGCGAGCGACGACGCCAGCGAGTGCGGCGCCGGCGGCGAGGGGGAGTCCCGCGGCAGCCCCAAGAGCTGGTCGCCGCGGGACATGGAGCGGGCGCTGCAGGCGCTCAGGGACCGCCGCATGAGCCTCACCAAGGCGTCCGCCCTGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCGAAGCGCGACGGCCAGCCGCGCCGCTGGGGCGAGCCCGAGCTGCGGGCGGCGCTGCACGCGCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGCAGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCACTTCGGCATCCCCTCCGGTACCCTGTATGGGCGGTGCAAGCGAGAGGGCATCGAGCTATCCCGCTCCAACCCCACGCCCTGGTCAGAAGACGCTATGGGCGAGGCGCTCGAAGCCGTCAGGGTTGGCCAGATGTCCATAAACCAGGCGGCCATCCACTACAACCTGCCCTACTCCTCGCTCTACGGAAGGTTCAAGCGGTGCAAATATCAGACGCAGAGCATGGCGCCGGAGGGCGGGTCCCCGGAGAGCGCGGAGGGGCAGGGCGCGGCGGGCTGGTGGGGCGGAGGCGCCGATGGCGCAGTCCCGTGCAGCCAGCTGCTGGCCGAGGCGCAGACGCTGCTGCACGAGCAGTACGGCCAGCACGCGTACGGCGCCTACAGCGGCCTGGCCACCAGCTGA
- Protein Sequence
- MVNQLKLCSPAQVDEVDELELTPPAPAAPSATPVCARRVPPPRASPETLETLEPARASTGTTLLDRRMQMLDPGDDFGPLLSVKDEPLSESEQQQASDDASECGAGGEGESRGSPKSWSPRDMERALQALRDRRMSLTKASALYGIPSTTLWQRAHRLGIDTPKRDGQPRRWGEPELRAALHALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALAAIRCGAASVQRAAAHFGIPSGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQSMAPEGGSPESAEGQGAAGWWGGGADGAVPCSQLLAEAQTLLHEQYGQHAYGAYSGLATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -