Imas017587.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000169.1:384145-391381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.022 1.8 10.1 0.4 1 23 50 72 50 72 0.98 2 11 0.79 64 5.2 5.3 1 23 79 101 79 101 0.96 3 11 0.035 2.8 9.5 0.8 1 22 105 126 105 128 0.89 4 11 1 82 4.9 0.3 3 23 150 169 149 169 0.74 5 11 0.0012 0.098 14.1 1.8 2 23 176 198 175 198 0.93 6 11 0.39 32 6.2 0.1 2 12 207 217 207 227 0.74 7 11 0.0003 0.024 16.0 0.7 3 23 234 255 233 255 0.93 8 11 7.2e-05 0.0058 17.9 0.2 1 23 262 285 262 285 0.94 9 11 5.1e-05 0.0042 18.4 0.9 3 23 293 314 292 314 0.97 10 11 1.5e-05 0.0012 20.1 0.5 3 23 325 345 324 345 0.98 11 11 0.00019 0.015 16.6 1.4 1 23 351 374 351 374 0.93
Sequence Information
- Coding Sequence
- ATGGTGATTCTAGACGAACTGGACGACTTGGGTTACATGTTGGGTGACATAATGAAAGAGAGGATAAAGCCGATAATGCTGCCGGAGTCCGAGTACTGGCGGATCCATAGGGAGAGGCTCACCAAGCCGCAATACACGAACCTGCCGTACAAGTGCGCCAAATGCGCGCTGGCCTACCAGAAAGAAGCTTTGTACACGAAACACATGGCACGCCATTCACCAGAAGCCGGTTCATTCTCGTGCCATCTGTGCGGCACTCATCACCAGACGCGCTCCGATCTGACAATCCACGGGTCATCGCACCTGCGCCGCTACCAATGCAACGAGTGCGGCCATACCGGGTACAACCGGCAGGACGTCGCAAACCATTACTTCGCTGAGCACTCCCTGCTCCGGTTCCACTGCCGGCATTGCCACCTGCAGACCAAAAAAGAAGAGGCGGAGCCATGTCCCATCTGCAAGAAGATGATCAAGCAGAGGAACCGGGTGCGTCACGCTGCATCGCACGAGCTTGCCGCGCCACTGCGCTGCGGCGACTGCGGCCGCGAGTTCAAGAACGACGCTTGTCTGCGGCAGCACACCGTCAAGTTTCACACGCTGCGGCCCGAGAGCGTCGAGGAGTGCCCGGTGTGCGGCAAGAGCGTGGCGCGCGGGTCGCGGGCGGCGCACGCGCGCCAGCACTCCGCCGCGGGCGCCTTCTGCGCCGCCTGCCACAAGACCTTCACCACGCCCGGCGGGCTCAAGGCGCACCGCGAGCGGGCGCACGCGCCCGAGCGGCGCCGGTTCACCTGCGACGAGTGCGGGGTGACGTACACGTCCAAGGCGGCCGTCAGGAGACACATCTCCTTCCTGCACATGAAGCTTGGCGGTGTGGCCTGTGACGTGTGCGGCAAGATGTTCTCGCACGCGGGCGACATGCACAGCCACGTGCGCAGCGTGCACCAGAAGCACCTCGCGCGCCGCGACAAGCTGTGCGACCTCTGCGGGAAGGGCTTCACGACAAGCAAGACGCTGGAGAACCATCGCCTCATTCATACGGGTGAGAAGCCGCACGCATGCCGCGAGTGCGGGCAGGCGTTCCGGCAGCGCGCCGCACTCCAGACGCACTTCAAGCTGAAACACCTAAAAATGAAGATGAAGGACATCCTGAGTCGGCGGCGGCGGCGGCAGACGGAAGATCCGGCACGCGCTAACGCCTTCTCGCACGTGGATAAACCTTTCGTTTGA
- Protein Sequence
- MVILDELDDLGYMLGDIMKERIKPIMLPESEYWRIHRERLTKPQYTNLPYKCAKCALAYQKEALYTKHMARHSPEAGSFSCHLCGTHHQTRSDLTIHGSSHLRRYQCNECGHTGYNRQDVANHYFAEHSLLRFHCRHCHLQTKKEEAEPCPICKKMIKQRNRVRHAASHELAAPLRCGDCGREFKNDACLRQHTVKFHTLRPESVEECPVCGKSVARGSRAAHARQHSAAGAFCAACHKTFTTPGGLKAHRERAHAPERRRFTCDECGVTYTSKAAVRRHISFLHMKLGGVACDVCGKMFSHAGDMHSHVRSVHQKHLARRDKLCDLCGKGFTTSKTLENHRLIHTGEKPHACRECGQAFRQRAALQTHFKLKHLKMKMKDILSRRRRRQTEDPARANAFSHVDKPFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -