Imas024759.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000258.1:2094920-2111367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.5 2e+02 3.6 0.3 2 23 6 27 5 27 0.95 2 14 0.64 52 5.5 1.1 1 23 526 549 526 549 0.91 3 14 1.4 1.1e+02 4.5 0.2 1 23 631 653 631 653 0.96 4 14 1.5e-05 0.0012 20.0 0.5 2 23 656 677 655 677 0.96 5 14 0.004 0.33 12.4 5.0 1 23 683 705 683 705 0.98 6 14 0.00085 0.069 14.5 8.4 2 23 712 733 711 734 0.95 7 14 7 5.7e+02 2.2 2.5 5 23 747 765 744 765 0.96 8 14 0.0013 0.11 13.9 1.3 3 23 772 793 771 793 0.97 9 14 0.56 46 5.7 0.2 2 23 809 829 808 829 0.94 10 14 0.00018 0.015 16.7 0.7 3 20 837 854 835 857 0.91 11 14 0.0014 0.11 13.9 1.9 1 23 865 887 865 887 0.99 12 14 0.011 0.87 11.1 7.3 1 23 893 915 893 915 0.98 13 14 2.2e-06 0.00018 22.7 1.1 1 23 921 945 921 945 0.96 14 14 0.00078 0.064 14.6 3.6 1 23 951 973 951 974 0.94
Sequence Information
- Coding Sequence
- ATGGATCAGCTGCAGCAATGTCCGGTGTGCACGCTGTACTTGCACAGCGGCATGTCCCTGGAGGCTCACCTTGACACACATCCCAAGGACCAGGTGATCCGAGCGCTATGCAAGATTTCCAGCAGTCGCAGCAATTATGGCAGTCGCTGTACAACTCCTGCACAGTCGGAACGATCGTACTGCAGCCGGTCTCGCACGCCGGCCTCGACGCTCGACGGCCGGGCTACGCCCAAAACTCCCTTTTCGGAAGATAAAGAAAGAAGAAAGCGGCCTCCACGGACGCCAGCGCCACGATCAGAGACCCCTGCCAATGTGTTTCACAATGATCCGGGCATATATGAGGCATCATCGAGCTCCATCCTCACCCCGGCTTCGAGCGACTGTTTCATCAACAGACAGATCGCACCGACGTACGTGCGGCCAGGACCAACATCGGAGATGAGCGGGCACTATGTGTACATGCAAGAGCAACCAGAGGAGGTGGAAGTGAAGTACTCCCGGAGCGAGGAGTACAACCTTGCACCCAATCGGACCGACAATGTGTATGCATACAGCGTTCAGAGCAACACCAGCCGCATGCCACAACGAACCTCGGTTACTCCCACAAAGCAACGCACCGACTGCTATGATATGCTTCCCAAACACAACAGCGTTTCGCTCCTAAAAACAAATGTGACTCCTGTTCAATATGTCAATCAAGGGGTCAAACCCCTGCAGTTTATGGTACCCACCCCTCAAGGCTTTGTTCAGTCTCAGCAGAACTCCACTAATAACATGATAATAACTGGAGGTGTGAACGATGTTCTCCAACCAGTCTCCAGCAAGAATGTCACCGATCTCACCGATTCCCGCAAGACTGAAAAAGATGAAATTGAACAAGAGCTGGACAACTTTGACATGGATGCGGAGGAGCAGTCCTTGAACATTGAACCGACTGCGCATAACGAATCCTACAAGGCCGACTTTGACCACATACCCAAGGAAGAAGCTAATCAAAATCGCGCCGAGTCCTTCGCCAACACTCGCGAAGAGCGACAGCCCCCAATGTACTGCGTAGAAATCCAAAAGACTGAGCTGCCACCGATTGAAGAGGAACAGCCTTACATGTGGGGGGAGACATCGCAGCGCGAGCCTTTCCTGCTTCCAAGCTTCGTCAATGAGACCTACAAGGTGACGGATTACACGACGACAAACACTGAATCGAGTTTCGGGCTGAATGCGAGCGCAGAGCTGGAAGAGAGGGACTACCACGAGCTGACATGTCGGCCGGAGGTGGAGGAGTATGTGGCAGTTGGCAAGATGGAGCTGGTTACCGAGGAGCGCAGCAGCTCCGGGGAGGTGGCGCTGGACATCTGCGCTGACGAGCGTATGCCGCCTCGTGGGGAACTGTCGGGTCAGGAGAGCAACGGTGATATGGACACACCCTGGAGCGGGATGTACCACAACATCAACAGCTCCACGTCGTACGACCTGATGGCCCGAGAGACCTGGGTCTCCGATGGTTCTGACATCGACCCTACTGAGAAGACTGACAATTTAGAGCAAAAGACCAAGATCCAGATCGCCAAGCGCAGCTACAAGTGCGCGACGTGCGGCCTCGCGTTCAACTGCCCGAAGGAGCGTCGCGTGCACCGCGCCCGGGAGCACCCGATGCCGTCGACGGCGAGCTCGCGGAGCGCGCGCCAGCGGCAGACGCAGCGGCGGCGGCCGCCGGCGCTGCCCATCAAGAAGGAGGAGAAGCCGGAGGCGATGCTGCCGGGGGAGATCGTCGGGCAGGTGGCGAGCCGGATGGCCGAGGTGTACGACGCGCTCGTGAAGCCCGACCTGGCCGGCGCCAAGCTGGAGACCGACGTCGCCGTCAAGGAGGAGCCCCGCAAGCGGCGCCGCGACTACATCTGCCCGGTGTGCAAAGTTGACCTGCAAAATGAGATCGCGTTCCATGCTCACCTCAAACTGCACCCGCTGGAGTGCCTCACGTGCGGCAAGTACTTCTACCGGCGCGCTAACTTGCAGCTGCATCTGCGCATCCACCTCGCCATCAAGAACTACAAGTGTGAAGTGTGCGAGAAGCGTTTCTCGACCAAGCAGAAGATGGTGGAGCACCACCACATCCACACGGGCGCGATGCCGGTCAAGTGCAGCCACTGCAATGAGACCTTCCGCCGCCACTCCAACATGATCCAGCATCGCAACCGCCACCACTTCCACATCAAGAAGAAGATCAAGGACTACGTGTGCCACTGCGGCGAGGTGCTGCACTCGCGCCGCAAGCTGCTCTGGCACAAGGAGACGCACTCGGACAAGCCGCGCGCGTGCACGTATTGCAGCGACAAGTTCGTGCACGCGGCGTCGCTCACGCGGCACATCCGTCGCTCGCACAACCGCTACTACGTGCCGGACGAGGCGCGCGCCAAGGAGAACATCCAGTGCCCCATCTGCAAGCAGGTGTACCTCAAGAACAACATCGACATGCACCTGCAGACGCACACGGGCAAGAAGCCGTACGGCTGCGTCATCTGCAACAAGTCGTTCAGCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACGCGAACCGCTCCGCCAAGCCGTTCAAGTGCTCGCTATGCAAGGGCGCGTTCATCCGCCACTCGGAGTACGTGTCGCACATGAACTCGCACAAGTCGCTGCGGCCGTACACGTGCAACTACTGCGGCTGTCAGTTCATACGCAAGTACAACTGTCAGCGGCACGTCAAGGAGCACGAGTCGAACAAGCGCTACGCGTGCACGGTGCCCGAGTGCGGCAAGACCTTCCACCGCAGCTACTACCTCACGGAGCACATGCGCGTGCACAGCGGCGCGCGCCCCTTCGCCTGCAACATCTGCGGGAAGACCTCCAGCAACAAGTCCAACCACAACAAGCACGTCATGATACACCACGCGCGCGAGCCCGTCGCCACGGAGGGCTAG
- Protein Sequence
- MDQLQQCPVCTLYLHSGMSLEAHLDTHPKDQVIRALCKISSSRSNYGSRCTTPAQSERSYCSRSRTPASTLDGRATPKTPFSEDKERRKRPPRTPAPRSETPANVFHNDPGIYEASSSSILTPASSDCFINRQIAPTYVRPGPTSEMSGHYVYMQEQPEEVEVKYSRSEEYNLAPNRTDNVYAYSVQSNTSRMPQRTSVTPTKQRTDCYDMLPKHNSVSLLKTNVTPVQYVNQGVKPLQFMVPTPQGFVQSQQNSTNNMIITGGVNDVLQPVSSKNVTDLTDSRKTEKDEIEQELDNFDMDAEEQSLNIEPTAHNESYKADFDHIPKEEANQNRAESFANTREERQPPMYCVEIQKTELPPIEEEQPYMWGETSQREPFLLPSFVNETYKVTDYTTTNTESSFGLNASAELEERDYHELTCRPEVEEYVAVGKMELVTEERSSSGEVALDICADERMPPRGELSGQESNGDMDTPWSGMYHNINSSTSYDLMARETWVSDGSDIDPTEKTDNLEQKTKIQIAKRSYKCATCGLAFNCPKERRVHRAREHPMPSTASSRSARQRQTQRRRPPALPIKKEEKPEAMLPGEIVGQVASRMAEVYDALVKPDLAGAKLETDVAVKEEPRKRRRDYICPVCKVDLQNEIAFHAHLKLHPLECLTCGKYFYRRANLQLHLRIHLAIKNYKCEVCEKRFSTKQKMVEHHHIHTGAMPVKCSHCNETFRRHSNMIQHRNRHHFHIKKKIKDYVCHCGEVLHSRRKLLWHKETHSDKPRACTYCSDKFVHAASLTRHIRRSHNRYYVPDEARAKENIQCPICKQVYLKNNIDMHLQTHTGKKPYGCVICNKSFSTKWNLKLHRWTHANRSAKPFKCSLCKGAFIRHSEYVSHMNSHKSLRPYTCNYCGCQFIRKYNCQRHVKEHESNKRYACTVPECGKTFHRSYYLTEHMRVHSGARPFACNICGKTSSNKSNHNKHVMIHHAREPVATEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -