Imas024259.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- L_1
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000254.1:115210-121056[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.72 58 5.3 5.8 1 23 3 25 3 25 0.97 2 15 1.9e-06 0.00016 22.9 3.1 1 23 31 53 31 53 0.99 3 15 3e-05 0.0024 19.1 0.1 1 23 59 81 59 81 0.98 4 15 0.00014 0.012 17.0 0.2 1 23 91 114 91 114 0.97 5 15 6.9 5.6e+02 2.2 0.1 9 23 147 162 143 162 0.93 6 15 0.34 28 6.3 0.0 3 23 215 235 214 235 0.97 7 15 0.085 6.9 8.2 0.6 3 23 259 279 259 279 0.95 8 15 0.0014 0.11 13.9 0.9 1 23 287 310 287 310 0.93 9 15 0.037 3 9.4 0.1 1 23 315 338 315 338 0.92 10 15 0.0004 0.033 15.6 0.6 1 23 401 423 401 424 0.96 11 15 8.3e-05 0.0067 17.7 0.5 2 23 488 509 487 509 0.97 12 15 1 82 4.9 0.1 1 23 517 539 517 539 0.96 13 15 2.1 1.7e+02 3.8 0.2 1 23 657 679 657 679 0.93 14 15 0.0043 0.35 12.3 0.9 1 20 687 706 687 709 0.95 15 15 0.28 23 6.6 0.3 1 23 716 738 716 738 0.93
Sequence Information
- Coding Sequence
- ATGCCGTTCCGCTGCGAGTTCTGCTCGCGGCTGTTCAAGCACAAGCGCTCGCGCGACCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCGCACTGCGAGGCCGCCTTCTCCAGGAGTGACCACCTGAAGATACATATGAAGACGCACGACAATCAGAAGCCGTTCCAGTGCACGGTGTGCAACCGTGGCTACAACACGGCGGCGGCGCTCACGTCGCACATGCAGGGCCACAAGCGGGAGCCGGAGCGGCGCCGCGCCTTCCGCTGCCTGCGCTGCGGGGACTCCTTCCGGCGCCCGGATCAGTTGCAGGGTCACATGTTATCAGCTCACGGCGTGGAGTCTCCGACCGCCGCCGGCAGCCCTCCGCGCCGCGCCGCACCCCCCGCGCCGCCCGCGCTGCTCGCCTGCATCTACTGCACACGCGACACCTTCACCTCCATGGAGCAGTTGCAGCTGCACGTGCGCGCCGCGCACTCGGCCCTGCTCAACGGCGACGCGCCGCCCGCCGAGCAGTCCGCGCCCACCGACCTCAGCCGACGACCCACCGAAGAACCGCCGGTGAAGAGGCCGAAGTCGTCCGGCTCCGCCGCCCACACGCCGCGCTCGTCGCTCTCGCCGGGGACGCTGCTCTGCAACCAGTGCGACGCCGCGCTGCCGGACTTCGAGGCGTTCCGGGCGCACCTCAAGGCGCACCTCGAGGAGAGCGGCGGCGGGGCGGAGCCGGCGGCGGCGCCGGGCGGCGGCGGGAGCCCCCCGCCGGGCTGCCCGCACTGCGGCGCGACCTTCACAGAGGCGGTGGCCTGCGAGCGGCACGTGGCGTCGCACTTCCTGGCCGTCTCCTCGGAGTACTGCTGCCGGAGCTGCGCGAGGTCGTTCGCGTCGCCGGACGAGCTGCAGAAGCACCTGCTCGACCTGCACGCGCACCACCTCTACCGGTGTTCGCTCTGCAAGGAGATCTTCGACTCCAAGGTGGCTATACAGGTGCACTTCGCGGTGGCGCACAGCGGCGAGAGCAAGGTGTGGCGGTGCCGCGGCGGAGGCGCGTGCGGCGGAGCGGCACTGCGCTCGGAGGCGGAGTGGGCGGCGCACGTGCGCGCGCAGCACGCGGCACGCCGCTGCGTGCTGTGCCGCGTGCTGTGCGCGGGCGAGCGCGAGCTGCGCGCGCACGCCGCCGCGCACGCGCACCACTACCGCTGCCCCGTCTGCACGGACACGTTCGCCGTGCAGTTCCTGCTCGAGCGGCACATGCAGGCGCACCACGCCGCCGTCGCCCTCGCCAACGTGCACCAGGCTACAAATGGCGACACCGCCCGCGCCAAGCCTCGCCTCGAGAACAACAACGGTAGCGGTGATGGGGGAGCGTGCGAGCCGTGCGCGGGCGGCGGGGGGGCAGGCGGGGGAGGCGGCGACGAGCGACGCACCCGCTCCAAGAACGGCGCCGTGTCCCTCCGCTGCGCCTACTGCGGCGAGCCGTGCCGCTCGCGCGCCGAGCTCGAGGCGCACACCAAGACGCACAGCGGGGCCGGCGGCGCGCGCCACAAGTGCCTCATCTGCGACGAACTGCTGCCCTCCGCCGCCGTGCTCGCCGAGCACAAGCTCACGCACTGCAAGGTAGTCGCCGGCGACGCGTGCGCCCGCTGCCGCGCCCACCTGCCCTCCGAGGAGGCTTTCCTCGCGCACCTCGCGCGCCACCACCCCGCGCTGCCGGCGCCCTGCGTCGTCTGCCGCCAGACGCTCGCCACCGACGTCGAGGCGCGCCTCCACGCGCGCTTCCACCTGAAGGGCGGCGCCGGCGAGGAGCGGCAGTGCGCGCTCTGCCTGCGCAGCCTGCCCGCGCGCGACACCATCGAGACCGGCGAGGGCGGCGCGCGCGTCTGCGTCGCGTGCTACCGGCGCCACGCGGCCGCGCCGAGCCTCGCGCCCGCGCCGGCGCCCGCTACCGCCGGGGAGGAGGCGCACGACTGCCGCCTGTGCAGGCGCGCGCTCGGCTCGCCGATGCGGCTGCAGGCGCACCTCATCGAGCACACGTTCGCCGGCTGCGGCGCGTTCACATGCTACCTGTGCTCGTGCGTGTTCACGAGCGCGGCGGGCCTGCAGCGCCACCTGCCGGAGCACGGCGCGGCGGCGCGCCCCTACGACTGCGCGCGCTGCGGGCTCAAGTTCTTCTTTCGGGCGGAGCTCGACAACCACGGCTTCGTGCACCTCGAGGAGGCGGCGCGCGCGGACGCGGAGCTCGCGCAGCGCGCCTTCTACGAGGCGTACGCGCGCGGGGCAGCGGCGTGGGGCGCGCGCGTGTCCCCGCCGGCGCCCCCGCCGCCGCCGCTCAAGCTCGAGGTGAAGGTGAAGGAGGAGCGCGCGGGGGAGGAGTACATCGAGGTGGGCTCGCCCCCACCCCCTCCGCCGCCTGCCCCCTCGTCCCCCCCTCCCGCCGTCAAGAAGGAGAAGCAGGAGGAGTAG
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREPERRRAFRCLRCGDSFRRPDQLQGHMLSAHGVESPTAAGSPPRRAAPPAPPALLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDAPPAEQSAPTDLSRRPTEEPPVKRPKSSGSAAHTPRSSLSPGTLLCNQCDAALPDFEAFRAHLKAHLEESGGGAEPAAAPGGGGSPPPGCPHCGATFTEAVACERHVASHFLAVSSEYCCRSCARSFASPDELQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWRCRGGGACGGAALRSEAEWAAHVRAQHAARRCVLCRVLCAGERELRAHAAAHAHHYRCPVCTDTFAVQFLLERHMQAHHAAVALANVHQATNGDTARAKPRLENNNGSGDGGACEPCAGGGGAGGGGGDERRTRSKNGAVSLRCAYCGEPCRSRAELEAHTKTHSGAGGARHKCLICDELLPSAAVLAEHKLTHCKVVAGDACARCRAHLPSEEAFLAHLARHHPALPAPCVVCRQTLATDVEARLHARFHLKGGAGEERQCALCLRSLPARDTIETGEGGARVCVACYRRHAAAPSLAPAPAPATAGEEAHDCRLCRRALGSPMRLQAHLIEHTFAGCGAFTCYLCSCVFTSAAGLQRHLPEHGAAARPYDCARCGLKFFFRAELDNHGFVHLEEAARADAELAQRAFYEAYARGAAAWGARVSPPAPPPPPLKLEVKVKEERAGEEYIEVGSPPPPPPPAPSSPPPAVKKEKQEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01042909;
- 90% Identity
- -
- 80% Identity
- -